Protein–RNA interactions for Protein: Q9Y3X0

CCDC9, Coiled-coil domain-containing protein 9, humanhuman

Known RBP Predictions only

Length 531 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC9Q9Y3X0 RNU6-1292P-201ENST00000383856 107 ntBASIC1.96□□□□□ -2.1
CCDC9Q9Y3X0 RNU6-1144P-201ENST00000384247 104 ntBASIC1.96□□□□□ -2.1
CCDC9Q9Y3X0 Y_RNA.525-201ENST00000384570 113 ntBASIC1.96□□□□□ -2.1
CCDC9Q9Y3X0 RNU6-429P-201ENST00000384582 108 ntBASIC1.96□□□□□ -2.1
CCDC9Q9Y3X0 RNY4P18-201ENST00000391107 89 ntBASIC1.96□□□□□ -2.1
CCDC9Q9Y3X0 SNORD77.3-201ENST00000391113 65 ntBASIC1.96□□□□□ -2.1
CCDC9Q9Y3X0 snoU13.16-201ENST00000459350 104 ntBASIC1.96□□□□□ -2.1
CCDC9Q9Y3X0 RNU11-2P-201ENST00000516898 142 ntBASIC1.96□□□□□ -2.1
CCDC9Q9Y3X0 AP003716.2-201ENST00000528260 108 ntBASIC1.96□□□□□ -2.1
CCDC9Q9Y3X0 MIR6129-201ENST00000616087 109 ntBASIC1.96□□□□□ -2.1
CCDC9Q9Y3X0 AC027335.2-201ENST00000624030 375 ntBASIC1.96□□□□□ -2.1
CCDC9Q9Y3X0 RNU6-235P-201ENST00000362644 107 ntBASIC1.95□□□□□ -2.1
CCDC9Q9Y3X0 Y_RNA.120-201ENST00000363304 110 ntBASIC1.95□□□□□ -2.1
CCDC9Q9Y3X0 Y_RNA.294-201ENST00000364916 102 ntBASIC1.95□□□□□ -2.1
CCDC9Q9Y3X0 Y_RNA.330-201ENST00000365230 109 ntBASIC1.95□□□□□ -2.1
CCDC9Q9Y3X0 Y_RNA.374-201ENST00000365606 101 ntBASIC1.95□□□□□ -2.1
CCDC9Q9Y3X0 SNORA24-201ENST00000384096 131 ntBASIC1.95□□□□□ -2.1
CCDC9Q9Y3X0 SNORA75.2-201ENST00000391138 150 ntBASIC1.95□□□□□ -2.1
CCDC9Q9Y3X0 SNORA75.3-201ENST00000391231 150 ntBASIC1.95□□□□□ -2.1
CCDC9Q9Y3X0 MIR1304-201ENST00000408243 91 ntBASIC1.95□□□□□ -2.1
CCDC9Q9Y3X0 MIR1185-1-201ENST00000408598 86 ntBASIC1.95□□□□□ -2.1
CCDC9Q9Y3X0 RNU7-96P-201ENST00000459535 64 ntBASIC1.95□□□□□ -2.1
CCDC9Q9Y3X0 U6.95-201ENST00000636931 70 ntBASIC1.95□□□□□ -2.1
CCDC9Q9Y3X0 MIR3914-2-201ENST00000637339 95 ntBASIC1.95□□□□□ -2.1
CCDC9Q9Y3X0 ZGRF1-208ENST00000505019 6652 ntAPPRIS P1 TSL 5 BASIC1.94□□□□□ -2.1
CCDC9Q9Y3X0 SNORA63.4-201ENST00000362763 126 ntBASIC1.94□□□□□ -2.1
CCDC9Q9Y3X0 U8.1-201ENST00000362843 134 ntBASIC1.94□□□□□ -2.1
CCDC9Q9Y3X0 RNU6-1336P-201ENST00000383886 109 ntBASIC1.94□□□□□ -2.1
CCDC9Q9Y3X0 AC063976.4-201ENST00000421971 163 ntBASIC1.94□□□□□ -2.1
CCDC9Q9Y3X0 RNU6-772P-201ENST00000516042 105 ntBASIC1.94□□□□□ -2.1
CCDC9Q9Y3X0 Y_RNA.709-201ENST00000516952 92 ntBASIC1.94□□□□□ -2.1
CCDC9Q9Y3X0 AC131055.1-201ENST00000584626 316 ntBASIC1.94□□□□□ -2.1
CCDC9Q9Y3X0 CXADR-202ENST00000356275 270 ntTSL 1 (best) BASIC1.93□□□□□ -2.1
CCDC9Q9Y3X0 RNU1-93P-201ENST00000364704 169 ntBASIC1.93□□□□□ -2.1
CCDC9Q9Y3X0 Y_RNA.280-201ENST00000364765 112 ntBASIC1.93□□□□□ -2.1
CCDC9Q9Y3X0 Y_RNA.440-201ENST00000384120 114 ntBASIC1.93□□□□□ -2.1
CCDC9Q9Y3X0 MRPL35P3-201ENST00000421557 364 ntBASIC1.93□□□□□ -2.1
CCDC9Q9Y3X0 AL035398.1-201ENST00000430869 322 ntBASIC1.93□□□□□ -2.1
CCDC9Q9Y3X0 AL158147.1-201ENST00000443970 75 ntBASIC1.93□□□□□ -2.1
CCDC9Q9Y3X0 RNU7-90P-201ENST00000459216 62 ntBASIC1.93□□□□□ -2.1
CCDC9Q9Y3X0 RNU6-1223P-201ENST00000517124 104 ntBASIC1.93□□□□□ -2.1
CCDC9Q9Y3X0 MTND5P34-201ENST00000568888 325 ntBASIC1.93□□□□□ -2.1
CCDC9Q9Y3X0 MIR3121-201ENST00000579680 77 ntBASIC1.93□□□□□ -2.1
CCDC9Q9Y3X0 MIR548AO-201ENST00000579992 96 ntBASIC1.93□□□□□ -2.1
CCDC9Q9Y3X0 MIR5197-201ENST00000583721 112 ntBASIC1.93□□□□□ -2.1
CCDC9Q9Y3X0 FAM19A1-204ENST00000617084 159 ntTSL 5 BASIC1.93□□□□□ -2.1
CCDC9Q9Y3X0 SEPT14P17-201ENST00000617978 177 ntBASIC1.93□□□□□ -2.1
CCDC9Q9Y3X0 PPP1R3A-201ENST00000284601 4384 ntAPPRIS P1 TSL 1 (best) BASIC1.92□□□□□ -2.1
CCDC9Q9Y3X0 RNU6-755P-201ENST00000364400 103 ntBASIC1.92□□□□□ -2.1
CCDC9Q9Y3X0 SNORD18B-201ENST00000365659 72 ntBASIC1.92□□□□□ -2.1
CCDC9Q9Y3X0 RNA5SP127-201ENST00000411051 133 ntBASIC1.92□□□□□ -2.1
CCDC9Q9Y3X0 RNU7-21P-201ENST00000459430 62 ntBASIC1.92□□□□□ -2.1
CCDC9Q9Y3X0 RNU6-589P-201ENST00000516485 107 ntBASIC1.92□□□□□ -2.1
CCDC9Q9Y3X0 AC133485.4-201ENST00000561835 220 ntBASIC1.92□□□□□ -2.1
CCDC9Q9Y3X0 AC138907.4-201ENST00000570107 226 ntBASIC1.92□□□□□ -2.1
CCDC9Q9Y3X0 AC008163.1-202ENST00000636004 2889 ntBASIC1.91□□□□□ -2.1
CCDC9Q9Y3X0 MIR342-201ENST00000362212 99 ntBASIC1.91□□□□□ -2.1
CCDC9Q9Y3X0 Y_RNA.114-201ENST00000363265 113 ntBASIC1.91□□□□□ -2.1
CCDC9Q9Y3X0 RNU6-396P-201ENST00000365369 105 ntBASIC1.91□□□□□ -2.1
CCDC9Q9Y3X0 MIR618-201ENST00000385287 98 ntBASIC1.91□□□□□ -2.1
CCDC9Q9Y3X0 AL603914.1-201ENST00000401964 204 ntBASIC1.91□□□□□ -2.1
CCDC9Q9Y3X0 RNU5E-3P-201ENST00000515913 68 ntBASIC1.91□□□□□ -2.1
CCDC9Q9Y3X0 MIR2115-201ENST00000516657 100 ntBASIC1.91□□□□□ -2.1
CCDC9Q9Y3X0 FSIP2-202ENST00000424728 20788 ntAPPRIS P2 TSL 5 BASIC1.91□□□□□ -2.1
CCDC9Q9Y3X0 RNU7-73P-201ENST00000458743 63 ntBASIC1.9□□□□□ -2.11
CCDC9Q9Y3X0 RNU6-998P-201ENST00000515894 101 ntBASIC1.9□□□□□ -2.11
CCDC9Q9Y3X0 RNU6-1061P-201ENST00000516530 99 ntBASIC1.9□□□□□ -2.11
CCDC9Q9Y3X0 Y_RNA.690-201ENST00000516603 95 ntBASIC1.9□□□□□ -2.11
CCDC9Q9Y3X0 MIR151B-201ENST00000584249 96 ntBASIC1.9□□□□□ -2.11
CCDC9Q9Y3X0 MIR302B-201ENST00000362188 73 ntBASIC1.89□□□□□ -2.11
CCDC9Q9Y3X0 RNU6-647P-201ENST00000364243 107 ntBASIC1.89□□□□□ -2.11
CCDC9Q9Y3X0 Y_RNA.351-201ENST00000365436 96 ntBASIC1.89□□□□□ -2.11
CCDC9Q9Y3X0 SNORA22-201ENST00000383907 134 ntBASIC1.89□□□□□ -2.11
CCDC9Q9Y3X0 RNU7-80P-201ENST00000459562 61 ntBASIC1.89□□□□□ -2.11
CCDC9Q9Y3X0 AC023790.1-201ENST00000482174 347 ntBASIC1.89□□□□□ -2.11
CCDC9Q9Y3X0 RNU7-70P-201ENST00000516941 66 ntBASIC1.89□□□□□ -2.11
CCDC9Q9Y3X0 AC108081.1-201ENST00000604358 221 ntBASIC1.89□□□□□ -2.11
CCDC9Q9Y3X0 AL670379.3-201ENST00000605040 251 ntBASIC1.89□□□□□ -2.11
CCDC9Q9Y3X0 AC108866.1-201ENST00000503073 2339 ntTSL 5 BASIC1.89□□□□□ -2.11
CCDC9Q9Y3X0 SNORD58C-201ENST00000365223 64 ntBASIC1.88□□□□□ -2.11
CCDC9Q9Y3X0 MIR624-201ENST00000385217 97 ntBASIC1.88□□□□□ -2.11
CCDC9Q9Y3X0 POLR2J4-204ENST00000418424 324 ntBASIC1.88□□□□□ -2.11
CCDC9Q9Y3X0 RNU2-11P-201ENST00000459191 187 ntBASIC1.88□□□□□ -2.11
CCDC9Q9Y3X0 SNORD33.1-201ENST00000516213 88 ntBASIC1.88□□□□□ -2.11
CCDC9Q9Y3X0 RNA5SP404-201ENST00000517118 132 ntBASIC1.88□□□□□ -2.11
CCDC9Q9Y3X0 RNU2-60P-201ENST00000517290 128 ntBASIC1.88□□□□□ -2.11
CCDC9Q9Y3X0 IGHVIII-67-2-201ENST00000519849 88 ntBASIC1.88□□□□□ -2.11
CCDC9Q9Y3X0 Y_RNA.454-201ENST00000384224 113 ntBASIC1.87□□□□□ -2.11
CCDC9Q9Y3X0 RNU6-939P-201ENST00000384634 107 ntBASIC1.87□□□□□ -2.11
CCDC9Q9Y3X0 MIR548A3-201ENST00000385297 97 ntBASIC1.87□□□□□ -2.11
CCDC9Q9Y3X0 MIR1302-7-201ENST00000408841 72 ntBASIC1.87□□□□□ -2.11
CCDC9Q9Y3X0 Y_RNA.617-201ENST00000410920 90 ntBASIC1.87□□□□□ -2.11
CCDC9Q9Y3X0 Y_RNA.630-201ENST00000411370 108 ntBASIC1.87□□□□□ -2.11
CCDC9Q9Y3X0 AC002429.1-201ENST00000437672 148 ntBASIC1.87□□□□□ -2.11
CCDC9Q9Y3X0 RNU4ATAC11P-201ENST00000515939 126 ntBASIC1.87□□□□□ -2.11
CCDC9Q9Y3X0 MIR4679-2-201ENST00000578358 77 ntBASIC1.87□□□□□ -2.11
CCDC9Q9Y3X0 MIR3613-201ENST00000579844 87 ntBASIC1.87□□□□□ -2.11
CCDC9Q9Y3X0 MIR6788-201ENST00000618842 66 ntBASIC1.87□□□□□ -2.11
CCDC9Q9Y3X0 MTND5P32-201ENST00000560711 1802 ntBASIC1.87□□□□□ -2.11
CCDC9Q9Y3X0 RNU6-1298P-201ENST00000362456 101 ntBASIC1.86□□□□□ -2.11
Retrieved 100 of 98,524 protein–RNA pairs in 338.8 ms