Protein–RNA interactions for Protein: Q9Y2B5

VPS9D1, VPS9 domain-containing protein 1, humanhuman

Predictions only

Length 631 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1Q9Y2B5 KIAA1107-202ENST00000636278 4065 ntAPPRIS P1 TSL 5 BASIC3.1□□□□□ -1.91
VPS9D1Q9Y2B5 ERBIN-202ENST00000380935 6692 ntTSL 5 BASIC3.1□□□□□ -1.91
VPS9D1Q9Y2B5 RNU6-829P-201ENST00000363700 112 ntBASIC3.09□□□□□ -1.91
VPS9D1Q9Y2B5 Y_RNA.236-201ENST00000364427 111 ntBASIC3.09□□□□□ -1.91
VPS9D1Q9Y2B5 MIR128-1-201ENST00000384921 82 ntBASIC3.09□□□□□ -1.91
VPS9D1Q9Y2B5 TRAJ30-201ENST00000390507 57 ntAPPRIS P1 BASIC3.09□□□□□ -1.91
VPS9D1Q9Y2B5 HMGN2P35-201ENST00000412164 270 ntBASIC3.09□□□□□ -1.91
VPS9D1Q9Y2B5 AL731684.2-201ENST00000426839 333 ntTSL 5 BASIC3.09□□□□□ -1.91
VPS9D1Q9Y2B5 RNU2-19P-201ENST00000517288 84 ntBASIC3.09□□□□□ -1.91
VPS9D1Q9Y2B5 MIR5680-201ENST00000577577 84 ntBASIC3.09□□□□□ -1.91
VPS9D1Q9Y2B5 MIR3140-201ENST00000583685 90 ntBASIC3.09□□□□□ -1.91
VPS9D1Q9Y2B5 PRELID3BP2-201ENST00000605362 201 ntBASIC3.09□□□□□ -1.91
VPS9D1Q9Y2B5 U6.81-201ENST00000612550 106 ntBASIC3.09□□□□□ -1.91
VPS9D1Q9Y2B5 LCOR-205ENST00000421806 16004 ntTSL 3 BASIC3.08□□□□□ -1.92
VPS9D1Q9Y2B5 MIR30D-201ENST00000362283 70 ntBASIC3.08□□□□□ -1.92
VPS9D1Q9Y2B5 RNU4-58P-201ENST00000363192 141 ntBASIC3.08□□□□□ -1.92
VPS9D1Q9Y2B5 RNU6-531P-201ENST00000516694 104 ntBASIC3.08□□□□□ -1.92
VPS9D1Q9Y2B5 EIF4BP1-201ENST00000554881 351 ntBASIC3.08□□□□□ -1.92
VPS9D1Q9Y2B5 MIR7112-201ENST00000616126 65 ntBASIC3.08□□□□□ -1.92
VPS9D1Q9Y2B5 ANGPTL3-201ENST00000371129 2805 ntAPPRIS P1 TSL 1 (best) BASIC3.08□□□□□ -1.92
VPS9D1Q9Y2B5 AC092435.3-201ENST00000565538 3654 ntBASIC3.08□□□□□ -1.92
VPS9D1Q9Y2B5 RNU6-112P-201ENST00000363599 104 ntBASIC3.07□□□□□ -1.92
VPS9D1Q9Y2B5 RNU6-53P-201ENST00000365367 106 ntBASIC3.07□□□□□ -1.92
VPS9D1Q9Y2B5 RNU6-604P-201ENST00000390917 100 ntBASIC3.07□□□□□ -1.92
VPS9D1Q9Y2B5 SCARNA13-201ENST00000516672 275 ntBASIC3.07□□□□□ -1.92
VPS9D1Q9Y2B5 RNA5SP137-201ENST00000516833 135 ntBASIC3.07□□□□□ -1.92
VPS9D1Q9Y2B5 MIR5089-201ENST00000580047 84 ntBASIC3.07□□□□□ -1.92
VPS9D1Q9Y2B5 ADARB1-213ENST00000611195 159 ntTSL 5 BASIC3.07□□□□□ -1.92
VPS9D1Q9Y2B5 MALAT1-207ENST00000613376 132 ntTSL 3 BASIC3.07□□□□□ -1.92
VPS9D1Q9Y2B5 MIR6740-201ENST00000618268 113 ntBASIC3.07□□□□□ -1.92
VPS9D1Q9Y2B5 TRDN-201ENST00000334268 4770 ntAPPRIS P3 TSL 1 (best) BASIC3.06□□□□□ -1.92
VPS9D1Q9Y2B5 RNU11-2P-201ENST00000516898 142 ntBASIC3.06□□□□□ -1.92
VPS9D1Q9Y2B5 MIR3126-201ENST00000577443 74 ntBASIC3.06□□□□□ -1.92
VPS9D1Q9Y2B5 DLEU2_3.1-201ENST00000620005 73 ntBASIC3.06□□□□□ -1.92
VPS9D1Q9Y2B5 TRDV1-202ENST00000621643 102 ntBASIC3.06□□□□□ -1.92
VPS9D1Q9Y2B5 TAB3-203ENST00000378930 6255 ntAPPRIS P1 TSL 1 (best) BASIC3.06□□□□□ -1.92
VPS9D1Q9Y2B5 OXR1-205ENST00000442977 2956 ntTSL 2 BASIC3.06□□□□□ -1.92
VPS9D1Q9Y2B5 RNU6-664P-201ENST00000362381 107 ntBASIC3.05□□□□□ -1.92
VPS9D1Q9Y2B5 RNA5SP48-201ENST00000363969 126 ntBASIC3.05□□□□□ -1.92
VPS9D1Q9Y2B5 SNORA24B-201ENST00000384176 131 ntBASIC3.05□□□□□ -1.92
VPS9D1Q9Y2B5 SNORA48.1-201ENST00000390879 135 ntBASIC3.05□□□□□ -1.92
VPS9D1Q9Y2B5 RNU6-1165P-201ENST00000410119 107 ntBASIC3.05□□□□□ -1.92
VPS9D1Q9Y2B5 ITCH-AS1-201ENST00000454205 299 ntTSL 5 BASIC3.05□□□□□ -1.92
VPS9D1Q9Y2B5 MIR5004-201ENST00000579078 107 ntBASIC3.05□□□□□ -1.92
VPS9D1Q9Y2B5 AC118755.2-201ENST00000584676 212 ntTSL 3 BASIC3.05□□□□□ -1.92
VPS9D1Q9Y2B5 Metazoa_SRP.32-201ENST00000622685 286 ntBASIC3.05□□□□□ -1.92
VPS9D1Q9Y2B5 ZBBX-204ENST00000392767 3071 ntAPPRIS ALT2 TSL 5 BASIC3.05□□□□□ -1.92
VPS9D1Q9Y2B5 AP006437.1-201ENST00000641440 3685 ntBASIC3.05□□□□□ -1.92
VPS9D1Q9Y2B5 ZNF280D-201ENST00000267807 4328 ntAPPRIS P3 TSL 1 (best) BASIC3.05□□□□□ -1.92
VPS9D1Q9Y2B5 AKAP9-202ENST00000358100 10309 ntTSL 1 (best) BASIC3.05□□□□□ -1.92
VPS9D1Q9Y2B5 ZNF280C-201ENST00000370978 4634 ntAPPRIS P1 TSL 1 (best) BASIC3.04□□□□□ -1.92
VPS9D1Q9Y2B5 BCLAF1-205ENST00000527536 5371 ntTSL 5 BASIC3.04□□□□□ -1.92
VPS9D1Q9Y2B5 SNORD101-201ENST00000384027 73 ntBASIC3.04□□□□□ -1.92
VPS9D1Q9Y2B5 HMGN2P3-201ENST00000433603 273 ntBASIC3.04□□□□□ -1.92
VPS9D1Q9Y2B5 HMGN2P5-201ENST00000436882 273 ntBASIC3.04□□□□□ -1.92
VPS9D1Q9Y2B5 AL691482.2-201ENST00000457453 84 ntBASIC3.04□□□□□ -1.92
VPS9D1Q9Y2B5 RNU7-195P-201ENST00000458793 62 ntBASIC3.04□□□□□ -1.92
VPS9D1Q9Y2B5 RNU7-26P-201ENST00000458980 63 ntBASIC3.04□□□□□ -1.92
VPS9D1Q9Y2B5 RN7SL633P-201ENST00000488974 297 ntBASIC3.04□□□□□ -1.92
VPS9D1Q9Y2B5 RNA5SP385-201ENST00000515947 110 ntBASIC3.04□□□□□ -1.92
VPS9D1Q9Y2B5 RNU6-322P-201ENST00000516010 103 ntBASIC3.04□□□□□ -1.92
VPS9D1Q9Y2B5 SNORA31.26-201ENST00000517250 137 ntBASIC3.04□□□□□ -1.92
VPS9D1Q9Y2B5 AC107016.2-201ENST00000547968 190 ntBASIC3.04□□□□□ -1.92
VPS9D1Q9Y2B5 MIR4696-201ENST00000581431 70 ntBASIC3.04□□□□□ -1.92
VPS9D1Q9Y2B5 CDKN2B-AS.1-201ENST00000617921 150 ntBASIC3.04□□□□□ -1.92
VPS9D1Q9Y2B5 MIR8057-201ENST00000620957 69 ntBASIC3.04□□□□□ -1.92
VPS9D1Q9Y2B5 LRRCC1-202ENST00000414626 4493 ntAPPRIS ALT2 TSL 1 (best) BASIC3.04□□□□□ -1.92
VPS9D1Q9Y2B5 SENP7-206ENST00000394094 4703 ntAPPRIS ALT2 TSL 1 (best) BASIC3.03□□□□□ -1.92
VPS9D1Q9Y2B5 AL035425.3-201ENST00000564206 4996 ntBASIC3.03□□□□□ -1.92
VPS9D1Q9Y2B5 APC-201ENST00000257430 10701 ntAPPRIS P1 TSL 5 BASIC3.03□□□□□ -1.92
VPS9D1Q9Y2B5 RNU6-824P-201ENST00000363724 104 ntBASIC3.03□□□□□ -1.92
VPS9D1Q9Y2B5 RNU1-91P-201ENST00000364746 163 ntBASIC3.03□□□□□ -1.92
VPS9D1Q9Y2B5 RNU6ATAC37P-201ENST00000408328 131 ntBASIC3.03□□□□□ -1.92
VPS9D1Q9Y2B5 MIR1283-2-201ENST00000408621 87 ntBASIC3.03□□□□□ -1.92
VPS9D1Q9Y2B5 RNU6ATAC33P-201ENST00000408647 126 ntBASIC3.03□□□□□ -1.92
VPS9D1Q9Y2B5 AC035139.1-201ENST00000423256 273 ntTSL 3 BASIC3.03□□□□□ -1.92
VPS9D1Q9Y2B5 DLEU2_3.2-201ENST00000612883 73 ntBASIC3.03□□□□□ -1.92
VPS9D1Q9Y2B5 TFEC-202ENST00000320239 6605 ntAPPRIS P1 TSL 1 (best) BASIC3.03□□□□□ -1.92
VPS9D1Q9Y2B5 SLC39A10-201ENST00000359634 5322 ntAPPRIS P1 TSL 1 (best) BASIC3.02□□□□□ -1.93
VPS9D1Q9Y2B5 MIR22-201ENST00000362190 85 ntBASIC3.02□□□□□ -1.93
VPS9D1Q9Y2B5 RNA5SP374-201ENST00000362939 125 ntBASIC3.02□□□□□ -1.93
VPS9D1Q9Y2B5 SNORA38.1-201ENST00000364172 131 ntBASIC3.02□□□□□ -1.93
VPS9D1Q9Y2B5 RNU6-1187P-201ENST00000364771 110 ntBASIC3.02□□□□□ -1.93
VPS9D1Q9Y2B5 RNU1-138P-201ENST00000384093 164 ntBASIC3.02□□□□□ -1.93
VPS9D1Q9Y2B5 MT-TF-201ENST00000387314 71 ntBASIC3.02□□□□□ -1.93
VPS9D1Q9Y2B5 AL606490.4-201ENST00000423117 127 ntBASIC3.02□□□□□ -1.93
VPS9D1Q9Y2B5 RN7SL75P-201ENST00000461926 281 ntBASIC3.02□□□□□ -1.93
VPS9D1Q9Y2B5 RN7SL20P-201ENST00000488827 297 ntBASIC3.02□□□□□ -1.93
VPS9D1Q9Y2B5 SNORA9.3-201ENST00000516383 129 ntBASIC3.02□□□□□ -1.93
VPS9D1Q9Y2B5 SNORA25.16-201ENST00000516741 121 ntBASIC3.02□□□□□ -1.93
VPS9D1Q9Y2B5 MIR4491-201ENST00000581087 68 ntBASIC3.02□□□□□ -1.93
VPS9D1Q9Y2B5 MIR4506-201ENST00000584693 77 ntBASIC3.02□□□□□ -1.93
VPS9D1Q9Y2B5 AL109933.3-201ENST00000619095 188 ntBASIC3.02□□□□□ -1.93
VPS9D1Q9Y2B5 PIK3C2G-202ENST00000433979 4840 ntAPPRIS P1 TSL 5 BASIC3.01□□□□□ -1.93
VPS9D1Q9Y2B5 SIRT1-202ENST00000403579 3333 ntTSL 1 (best) BASIC3.01□□□□□ -1.93
VPS9D1Q9Y2B5 RNU6-396P-201ENST00000365369 105 ntBASIC3.01□□□□□ -1.93
VPS9D1Q9Y2B5 RNA5SP465-201ENST00000391195 109 ntBASIC3.01□□□□□ -1.93
VPS9D1Q9Y2B5 TRAJ51-201ENST00000504127 63 ntBASIC3.01□□□□□ -1.93
VPS9D1Q9Y2B5 MIR4264-201ENST00000583520 66 ntBASIC3.01□□□□□ -1.93
VPS9D1Q9Y2B5 TTK-202ENST00000369798 3010 ntAPPRIS P3 TSL 1 (best) BASIC3.01□□□□□ -1.93
Retrieved 100 of 98,524 protein–RNA pairs in 195.3 ms