Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 AL121914.1-201ENST00000450188 156 ntBASIC0.3□□□□□ -2.36
FOXA2Q9Y261 SNORD127-201ENST00000458892 86 ntBASIC0.3□□□□□ -2.36
FOXA2Q9Y261 MIR3678-201ENST00000578455 94 ntBASIC0.3□□□□□ -2.36
FOXA2Q9Y261 MIR4744-201ENST00000581563 82 ntBASIC0.3□□□□□ -2.36
FOXA2Q9Y261 Y_RNA.430-201ENST00000384081 110 ntBASIC0.29□□□□□ -2.36
FOXA2Q9Y261 RNU6-738P-201ENST00000384531 106 ntBASIC0.29□□□□□ -2.36
FOXA2Q9Y261 MIR518A1-201ENST00000385068 85 ntBASIC0.29□□□□□ -2.36
FOXA2Q9Y261 RNU2-38P-201ENST00000410856 79 ntBASIC0.29□□□□□ -2.36
FOXA2Q9Y261 SEPT7P4-201ENST00000437076 306 ntBASIC0.29□□□□□ -2.36
FOXA2Q9Y261 Y_RNA.673-201ENST00000516306 88 ntBASIC0.29□□□□□ -2.36
FOXA2Q9Y261 AC022523.2-201ENST00000561045 150 ntBASIC0.29□□□□□ -2.36
FOXA2Q9Y261 AL662814.1-201ENST00000617364 121 ntBASIC0.29□□□□□ -2.36
FOXA2Q9Y261 NEAT1_2.1-201ENST00000620525 105 ntBASIC0.29□□□□□ -2.36
FOXA2Q9Y261 Y_RNA.149-201ENST00000363558 117 ntBASIC0.28□□□□□ -2.36
FOXA2Q9Y261 Y_RNA.459-201ENST00000384251 102 ntBASIC0.28□□□□□ -2.36
FOXA2Q9Y261 MIR598-201ENST00000384868 97 ntBASIC0.28□□□□□ -2.36
FOXA2Q9Y261 MIR548H3-201ENST00000408771 118 ntBASIC0.28□□□□□ -2.36
FOXA2Q9Y261 ATP6V0E1P1-201ENST00000412537 226 ntBASIC0.28□□□□□ -2.36
FOXA2Q9Y261 RNA5SP436-201ENST00000516020 115 ntBASIC0.28□□□□□ -2.36
FOXA2Q9Y261 RNU6-469P-201ENST00000516253 101 ntBASIC0.28□□□□□ -2.36
FOXA2Q9Y261 RNY3P16-201ENST00000516338 101 ntBASIC0.28□□□□□ -2.36
FOXA2Q9Y261 SNORD116-25-201ENST00000516517 92 ntBASIC0.28□□□□□ -2.36
FOXA2Q9Y261 MIR378D2-201ENST00000580636 98 ntBASIC0.28□□□□□ -2.36
FOXA2Q9Y261 AL589743.1-201ENST00000551932 2712 ntBASIC0.28□□□□□ -2.37
FOXA2Q9Y261 RNY1-201ENST00000364228 113 ntBASIC0.27□□□□□ -2.37
FOXA2Q9Y261 RNU6-978P-201ENST00000364371 103 ntBASIC0.27□□□□□ -2.37
FOXA2Q9Y261 Y_RNA.288-201ENST00000364854 92 ntBASIC0.27□□□□□ -2.37
FOXA2Q9Y261 Y_RNA.308-201ENST00000365043 101 ntBASIC0.27□□□□□ -2.37
FOXA2Q9Y261 RNU6-597P-201ENST00000365620 102 ntBASIC0.27□□□□□ -2.37
FOXA2Q9Y261 VTRNA1-3-201ENST00000365645 89 ntBASIC0.27□□□□□ -2.37
FOXA2Q9Y261 Y_RNA.567-201ENST00000384736 106 ntBASIC0.27□□□□□ -2.37
FOXA2Q9Y261 RNU6-578P-201ENST00000390980 103 ntBASIC0.27□□□□□ -2.37
FOXA2Q9Y261 RNU6ATAC42P-201ENST00000408637 95 ntBASIC0.27□□□□□ -2.37
FOXA2Q9Y261 AL358176.2-201ENST00000425769 204 ntBASIC0.27□□□□□ -2.37
FOXA2Q9Y261 IGHVIII-67-2-201ENST00000519849 88 ntBASIC0.27□□□□□ -2.37
FOXA2Q9Y261 RNY4P28-201ENST00000365281 93 ntBASIC0.26□□□□□ -2.37
FOXA2Q9Y261 RNU6-1327P-201ENST00000365302 105 ntBASIC0.26□□□□□ -2.37
FOXA2Q9Y261 RNU6-1011P-201ENST00000384668 107 ntBASIC0.26□□□□□ -2.37
FOXA2Q9Y261 Y_RNA.562-201ENST00000384695 113 ntBASIC0.26□□□□□ -2.37
FOXA2Q9Y261 RNU6-493P-201ENST00000391321 108 ntBASIC0.26□□□□□ -2.37
FOXA2Q9Y261 AC023051.1-201ENST00000414098 876 ntTSL 5 BASIC0.26□□□□□ -2.37
FOXA2Q9Y261 RNU2-4P-201ENST00000606190 192 ntBASIC0.26□□□□□ -2.37
FOXA2Q9Y261 SNORA25.18-201ENST00000607153 114 ntBASIC0.26□□□□□ -2.37
FOXA2Q9Y261 MIR6841-201ENST00000637129 72 ntBASIC0.26□□□□□ -2.37
FOXA2Q9Y261 MIR103A1-201ENST00000362165 78 ntBASIC0.25□□□□□ -2.37
FOXA2Q9Y261 RNU6-403P-201ENST00000363163 104 ntBASIC0.25□□□□□ -2.37
FOXA2Q9Y261 Y_RNA.118-201ENST00000363300 101 ntBASIC0.25□□□□□ -2.37
FOXA2Q9Y261 SNORA8.2-201ENST00000384372 139 ntBASIC0.25□□□□□ -2.37
FOXA2Q9Y261 RNA5SP193-201ENST00000410353 107 ntBASIC0.25□□□□□ -2.37
FOXA2Q9Y261 RNA5SP127-201ENST00000411051 133 ntBASIC0.25□□□□□ -2.37
FOXA2Q9Y261 MTND1P19-201ENST00000511780 315 ntBASIC0.25□□□□□ -2.37
FOXA2Q9Y261 Y_RNA.797-201ENST00000515977 94 ntBASIC0.25□□□□□ -2.37
FOXA2Q9Y261 AC133485.4-201ENST00000561835 220 ntBASIC0.25□□□□□ -2.37
FOXA2Q9Y261 MIR8066-201ENST00000617280 78 ntBASIC0.25□□□□□ -2.37
FOXA2Q9Y261 AC021613.1-201ENST00000623880 111 ntBASIC0.25□□□□□ -2.37
FOXA2Q9Y261 VPS35-212ENST00000640313 141 ntTSL 5 BASIC0.25□□□□□ -2.37
FOXA2Q9Y261 Y_RNA.42-201ENST00000362660 108 ntBASIC0.24□□□□□ -2.37
FOXA2Q9Y261 SNORA22.1-201ENST00000362701 134 ntBASIC0.24□□□□□ -2.37
FOXA2Q9Y261 Y_RNA.121-201ENST00000363309 113 ntBASIC0.24□□□□□ -2.37
FOXA2Q9Y261 SNORD27-201ENST00000363981 72 ntBASIC0.24□□□□□ -2.37
FOXA2Q9Y261 Y_RNA.556-201ENST00000384677 113 ntBASIC0.24□□□□□ -2.37
FOXA2Q9Y261 MIR624-201ENST00000385217 97 ntBASIC0.24□□□□□ -2.37
FOXA2Q9Y261 SNRPGP12-201ENST00000449481 213 ntBASIC0.24□□□□□ -2.37
FOXA2Q9Y261 SCARNA15-202ENST00000516881 127 ntBASIC0.24□□□□□ -2.37
FOXA2Q9Y261 AP003327.1-201ENST00000529684 127 ntBASIC0.24□□□□□ -2.37
FOXA2Q9Y261 Y_RNA.65-201ENST00000362846 100 ntBASIC0.23□□□□□ -2.37
FOXA2Q9Y261 SNORD44.1-201ENST00000363202 61 ntBASIC0.23□□□□□ -2.37
FOXA2Q9Y261 RNA5SP62-201ENST00000363457 110 ntBASIC0.23□□□□□ -2.37
FOXA2Q9Y261 RNU6-923P-201ENST00000364753 107 ntBASIC0.23□□□□□ -2.37
FOXA2Q9Y261 U8.15-201ENST00000390947 134 ntBASIC0.23□□□□□ -2.37
FOXA2Q9Y261 MTND2P23-201ENST00000422990 651 ntBASIC0.23□□□□□ -2.37
FOXA2Q9Y261 RNU6-1149P-201ENST00000516810 97 ntBASIC0.23□□□□□ -2.37
FOXA2Q9Y261 AC141846.1-201ENST00000568348 142 ntBASIC0.23□□□□□ -2.37
FOXA2Q9Y261 AL360085.1-201ENST00000604713 532 ntBASIC0.23□□□□□ -2.37
FOXA2Q9Y261 DEFB131A-201ENST00000334879 213 ntAPPRIS P1 TSL 1 (best) BASIC0.22□□□□□ -2.37
FOXA2Q9Y261 Y_RNA.13-201ENST00000362403 112 ntBASIC0.22□□□□□ -2.37
FOXA2Q9Y261 Y_RNA.20-201ENST00000362479 113 ntBASIC0.22□□□□□ -2.37
FOXA2Q9Y261 Y_RNA.133-201ENST00000363428 110 ntBASIC0.22□□□□□ -2.37
FOXA2Q9Y261 SNORD114-23-201ENST00000363536 72 ntBASIC0.22□□□□□ -2.37
FOXA2Q9Y261 SNORD118-201ENST00000363593 134 ntBASIC0.22□□□□□ -2.37
FOXA2Q9Y261 RNU6-643P-201ENST00000384018 107 ntBASIC0.22□□□□□ -2.37
FOXA2Q9Y261 Y_RNA.539-201ENST00000384635 107 ntBASIC0.22□□□□□ -2.37
FOXA2Q9Y261 Y_RNA.571-201ENST00000384753 98 ntBASIC0.22□□□□□ -2.37
FOXA2Q9Y261 MIR568-201ENST00000385036 95 ntBASIC0.22□□□□□ -2.37
FOXA2Q9Y261 SNORD58.1-201ENST00000391313 66 ntBASIC0.22□□□□□ -2.37
FOXA2Q9Y261 Y_RNA.617-201ENST00000410920 90 ntBASIC0.22□□□□□ -2.37
FOXA2Q9Y261 Y_RNA.626-201ENST00000411288 95 ntBASIC0.22□□□□□ -2.37
FOXA2Q9Y261 MTCYBP9-201ENST00000431021 303 ntBASIC0.22□□□□□ -2.37
FOXA2Q9Y261 DEFB131B-201ENST00000530210 213 ntAPPRIS P1 TSL 1 (best) BASIC0.22□□□□□ -2.37
FOXA2Q9Y261 MIR4308-201ENST00000580634 81 ntBASIC0.22□□□□□ -2.37
FOXA2Q9Y261 FAM19A1-204ENST00000617084 159 ntTSL 5 BASIC0.22□□□□□ -2.37
FOXA2Q9Y261 IST1-227ENST00000626438 126 ntTSL 5 BASIC0.22□□□□□ -2.37
FOXA2Q9Y261 Y_RNA.182-201ENST00000363880 111 ntBASIC0.21□□□□□ -2.38
FOXA2Q9Y261 RNU6-694P-201ENST00000364071 147 ntBASIC0.21□□□□□ -2.38
FOXA2Q9Y261 RNU6-949P-201ENST00000384040 107 ntBASIC0.21□□□□□ -2.38
FOXA2Q9Y261 Y_RNA.477-201ENST00000384352 108 ntBASIC0.21□□□□□ -2.38
FOXA2Q9Y261 SNORA72.6-201ENST00000384520 129 ntBASIC0.21□□□□□ -2.38
FOXA2Q9Y261 Y_RNA.515-201ENST00000384535 112 ntBASIC0.21□□□□□ -2.38
FOXA2Q9Y261 Y_RNA.588-201ENST00000391254 102 ntBASIC0.21□□□□□ -2.38
FOXA2Q9Y261 MIR1302-3-201ENST00000408128 138 ntBASIC0.21□□□□□ -2.38
Retrieved 100 of 98,524 protein–RNA pairs in 144.1 ms