Protein–RNA interactions for Protein: Q9UK41

VPS28, Vacuolar protein sorting-associated protein 28 homolog, humanhuman

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28Q9UK41 RNY4P28-201ENST00000365281 93 ntBASIC0.5□□□□□ -2.33
VPS28Q9UK41 RNU6-493P-201ENST00000391321 108 ntBASIC0.5□□□□□ -2.33
VPS28Q9UK41 MIR936-201ENST00000401264 98 ntBASIC0.5□□□□□ -2.33
VPS28Q9UK41 MTND1P19-201ENST00000511780 315 ntBASIC0.5□□□□□ -2.33
VPS28Q9UK41 Y_RNA.797-201ENST00000515977 94 ntBASIC0.5□□□□□ -2.33
VPS28Q9UK41 IGHVIII-67-2-201ENST00000519849 88 ntBASIC0.5□□□□□ -2.33
VPS28Q9UK41 AL360085.1-201ENST00000604713 532 ntBASIC0.5□□□□□ -2.33
VPS28Q9UK41 RNU2-4P-201ENST00000606190 192 ntBASIC0.5□□□□□ -2.33
VPS28Q9UK41 AL662814.1-201ENST00000617364 121 ntBASIC0.5□□□□□ -2.33
VPS28Q9UK41 PVT1_3.1-201ENST00000620853 95 ntBASIC0.5□□□□□ -2.33
VPS28Q9UK41 AC243829.3-201ENST00000622177 108 ntBASIC0.5□□□□□ -2.33
VPS28Q9UK41 RNU6-978P-201ENST00000364371 103 ntBASIC0.49□□□□□ -2.33
VPS28Q9UK41 RNU6-342P-201ENST00000384521 104 ntBASIC0.49□□□□□ -2.33
VPS28Q9UK41 RNA5SP127-201ENST00000411051 133 ntBASIC0.49□□□□□ -2.33
VPS28Q9UK41 AC114737.2-201ENST00000421583 173 ntBASIC0.49□□□□□ -2.33
VPS28Q9UK41 AC002350.1-201ENST00000490759 375 ntBASIC0.49□□□□□ -2.33
VPS28Q9UK41 RNY3P16-201ENST00000516338 101 ntBASIC0.49□□□□□ -2.33
VPS28Q9UK41 AC092634.7-201ENST00000621022 103 ntBASIC0.49□□□□□ -2.33
VPS28Q9UK41 MIR5087-201ENST00000635826 76 ntBASIC0.49□□□□□ -2.33
VPS28Q9UK41 SNORD18A-201ENST00000363753 72 ntBASIC0.48□□□□□ -2.33
VPS28Q9UK41 SNORD27-201ENST00000363981 72 ntBASIC0.48□□□□□ -2.33
VPS28Q9UK41 SNORD93-201ENST00000408813 74 ntBASIC0.48□□□□□ -2.33
VPS28Q9UK41 MTCYBP9-201ENST00000431021 303 ntBASIC0.48□□□□□ -2.33
VPS28Q9UK41 RNU6-694P-201ENST00000364071 147 ntBASIC0.47□□□□□ -2.33
VPS28Q9UK41 MIR624-201ENST00000385217 97 ntBASIC0.47□□□□□ -2.33
VPS28Q9UK41 RNU6-448P-201ENST00000517052 107 ntBASIC0.47□□□□□ -2.33
VPS28Q9UK41 MIR4711-201ENST00000578274 70 ntBASIC0.47□□□□□ -2.33
VPS28Q9UK41 AC021613.1-201ENST00000623880 111 ntBASIC0.47□□□□□ -2.33
VPS28Q9UK41 MIR6841-201ENST00000637129 72 ntBASIC0.47□□□□□ -2.33
VPS28Q9UK41 RNA5SP117-201ENST00000365294 118 ntBASIC0.46□□□□□ -2.34
VPS28Q9UK41 RNU6-643P-201ENST00000384018 107 ntBASIC0.46□□□□□ -2.34
VPS28Q9UK41 RNU4-83P-201ENST00000410863 133 ntBASIC0.46□□□□□ -2.34
VPS28Q9UK41 LINC00345-201ENST00000443679 285 ntTSL 5 BASIC0.46□□□□□ -2.34
VPS28Q9UK41 SNORA68.3-201ENST00000515906 83 ntBASIC0.46□□□□□ -2.34
VPS28Q9UK41 Y_RNA.20-201ENST00000362479 113 ntBASIC0.45□□□□□ -2.34
VPS28Q9UK41 SNORA22.1-201ENST00000362701 134 ntBASIC0.45□□□□□ -2.34
VPS28Q9UK41 Y_RNA.65-201ENST00000362846 100 ntBASIC0.45□□□□□ -2.34
VPS28Q9UK41 Y_RNA.515-201ENST00000384535 112 ntBASIC0.45□□□□□ -2.34
VPS28Q9UK41 RNU6-679P-201ENST00000391003 106 ntBASIC0.45□□□□□ -2.34
VPS28Q9UK41 RNU6ATAC42P-201ENST00000408637 95 ntBASIC0.45□□□□□ -2.34
VPS28Q9UK41 RNA5SP193-201ENST00000410353 107 ntBASIC0.45□□□□□ -2.34
VPS28Q9UK41 MTND2P23-201ENST00000422990 651 ntBASIC0.45□□□□□ -2.34
VPS28Q9UK41 RNU6-327P-201ENST00000516270 127 ntBASIC0.45□□□□□ -2.34
VPS28Q9UK41 uc_338.16-201ENST00000621804 95 ntBASIC0.45□□□□□ -2.34
VPS28Q9UK41 IST1-227ENST00000626438 126 ntTSL 5 BASIC0.45□□□□□ -2.34
VPS28Q9UK41 DEFB131A-201ENST00000334879 213 ntAPPRIS P1 TSL 1 (best) BASIC0.44□□□□□ -2.34
VPS28Q9UK41 Y_RNA.182-201ENST00000363880 111 ntBASIC0.44□□□□□ -2.34
VPS28Q9UK41 RNU6-923P-201ENST00000364753 107 ntBASIC0.44□□□□□ -2.34
VPS28Q9UK41 RNU6-597P-201ENST00000365620 102 ntBASIC0.44□□□□□ -2.34
VPS28Q9UK41 Y_RNA.478-201ENST00000384358 107 ntBASIC0.44□□□□□ -2.34
VPS28Q9UK41 RNU4-70P-201ENST00000384579 139 ntBASIC0.44□□□□□ -2.34
VPS28Q9UK41 Y_RNA.571-201ENST00000384753 98 ntBASIC0.44□□□□□ -2.34
VPS28Q9UK41 MIR216A-201ENST00000385063 110 ntBASIC0.44□□□□□ -2.34
VPS28Q9UK41 SNORD58.1-201ENST00000391313 66 ntBASIC0.44□□□□□ -2.34
VPS28Q9UK41 Y_RNA.626-201ENST00000411288 95 ntBASIC0.44□□□□□ -2.34
VPS28Q9UK41 SNORD71-201ENST00000411292 86 ntBASIC0.44□□□□□ -2.34
VPS28Q9UK41 RNU6-893P-201ENST00000458841 100 ntBASIC0.44□□□□□ -2.34
VPS28Q9UK41 Y_RNA.668-201ENST00000516233 93 ntBASIC0.44□□□□□ -2.34
VPS28Q9UK41 MIRLET7D-201ENST00000362263 87 ntBASIC0.43□□□□□ -2.34
VPS28Q9UK41 Y_RNA.133-201ENST00000363428 110 ntBASIC0.43□□□□□ -2.34
VPS28Q9UK41 Y_RNA.350-201ENST00000365409 98 ntBASIC0.43□□□□□ -2.34
VPS28Q9UK41 MIR613-201ENST00000385248 95 ntBASIC0.43□□□□□ -2.34
VPS28Q9UK41 RNU6-1149P-201ENST00000516810 97 ntBASIC0.43□□□□□ -2.34
VPS28Q9UK41 SCARNA15-202ENST00000516881 127 ntBASIC0.43□□□□□ -2.34
VPS28Q9UK41 RNA5SP94-201ENST00000516917 108 ntBASIC0.43□□□□□ -2.34
VPS28Q9UK41 AP003327.1-201ENST00000529684 127 ntBASIC0.43□□□□□ -2.34
VPS28Q9UK41 DEFB131B-201ENST00000530210 213 ntAPPRIS P1 TSL 1 (best) BASIC0.43□□□□□ -2.34
VPS28Q9UK41 AC087277.2-201ENST00000533203 151 ntTSL 5 BASIC0.43□□□□□ -2.34
VPS28Q9UK41 MIR8066-201ENST00000617280 78 ntBASIC0.43□□□□□ -2.34
VPS28Q9UK41 Y_RNA.42-201ENST00000362660 108 ntBASIC0.42□□□□□ -2.34
VPS28Q9UK41 SNORA25.7-201ENST00000364375 127 ntBASIC0.42□□□□□ -2.34
VPS28Q9UK41 Y_RNA.477-201ENST00000384352 108 ntBASIC0.42□□□□□ -2.34
VPS28Q9UK41 Y_RNA.539-201ENST00000384635 107 ntBASIC0.42□□□□□ -2.34
VPS28Q9UK41 SNORA25.12-201ENST00000516202 82 ntBASIC0.42□□□□□ -2.34
VPS28Q9UK41 AC141846.1-201ENST00000568348 142 ntBASIC0.42□□□□□ -2.34
VPS28Q9UK41 MIR4308-201ENST00000580634 81 ntBASIC0.42□□□□□ -2.34
VPS28Q9UK41 AC243829.6-201ENST00000612652 106 ntBASIC0.42□□□□□ -2.34
VPS28Q9UK41 CALCRL-202ENST00000409998 5223 ntAPPRIS P1 TSL 5 BASIC0.42□□□□□ -2.34
VPS28Q9UK41 RNU6-275P-201ENST00000364910 107 ntBASIC0.41□□□□□ -2.34
VPS28Q9UK41 SNORA40.8-201ENST00000411034 126 ntBASIC0.41□□□□□ -2.34
VPS28Q9UK41 RNU4-71P-201ENST00000516258 113 ntBASIC0.41□□□□□ -2.34
VPS28Q9UK41 RNU6-403P-201ENST00000363163 104 ntBASIC0.4□□□□□ -2.35
VPS28Q9UK41 RNA5SP517-201ENST00000364724 117 ntBASIC0.4□□□□□ -2.35
VPS28Q9UK41 MIR3678-201ENST00000578455 94 ntBASIC0.4□□□□□ -2.35
VPS28Q9UK41 AC090625.1-201ENST00000357130 210 ntBASIC0.39□□□□□ -2.35
VPS28Q9UK41 RNU4-16P-201ENST00000364737 141 ntBASIC0.39□□□□□ -2.35
VPS28Q9UK41 Y_RNA.393-201ENST00000383936 102 ntBASIC0.39□□□□□ -2.35
VPS28Q9UK41 RNU6-949P-201ENST00000384040 107 ntBASIC0.39□□□□□ -2.35
VPS28Q9UK41 SNORA50A-201ENST00000384225 134 ntBASIC0.39□□□□□ -2.35
VPS28Q9UK41 MIR568-201ENST00000385036 95 ntBASIC0.39□□□□□ -2.35
VPS28Q9UK41 MIR518A1-201ENST00000385068 85 ntBASIC0.39□□□□□ -2.35
VPS28Q9UK41 U8.15-201ENST00000390947 134 ntBASIC0.39□□□□□ -2.35
VPS28Q9UK41 RNU5E-9P-201ENST00000411164 104 ntBASIC0.39□□□□□ -2.35
VPS28Q9UK41 RNU6-469P-201ENST00000516253 101 ntBASIC0.39□□□□□ -2.35
VPS28Q9UK41 RNU6-1045P-201ENST00000516321 107 ntBASIC0.39□□□□□ -2.35
VPS28Q9UK41 RN7SL793P-201ENST00000583259 296 ntBASIC0.39□□□□□ -2.35
VPS28Q9UK41 AC062037.2-201ENST00000610137 73 ntBASIC0.39□□□□□ -2.35
VPS28Q9UK41 NEAT1_2.1-201ENST00000620525 105 ntBASIC0.39□□□□□ -2.35
VPS28Q9UK41 AL589743.1-201ENST00000551932 2712 ntBASIC0.39□□□□□ -2.35
VPS28Q9UK41 SNORD114-23-201ENST00000363536 72 ntBASIC0.38□□□□□ -2.35
Retrieved 100 of 98,524 protein–RNA pairs in 184.9 ms