Protein–RNA interactions for Protein: Q9UBR4

LHX3, LIM/homeobox protein Lhx3, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3Q9UBR4 AC090897.1-201ENST00000580909 226 ntBASIC0.39□□□□□ -2.35
LHX3Q9UBR4 RNU6-103P-201ENST00000363686 107 ntBASIC0.38□□□□□ -2.35
LHX3Q9UBR4 Y_RNA.308-201ENST00000365043 101 ntBASIC0.38□□□□□ -2.35
LHX3Q9UBR4 MT-TF-201ENST00000387314 71 ntBASIC0.38□□□□□ -2.35
LHX3Q9UBR4 RNA5SP261-201ENST00000410536 106 ntBASIC0.38□□□□□ -2.35
LHX3Q9UBR4 ATP6V0E1P1-201ENST00000412537 226 ntBASIC0.38□□□□□ -2.35
LHX3Q9UBR4 SNORA68.3-201ENST00000515906 83 ntBASIC0.38□□□□□ -2.35
LHX3Q9UBR4 SNORD92-201ENST00000585078 85 ntBASIC0.38□□□□□ -2.35
LHX3Q9UBR4 DLEU2_5.2-201ENST00000610606 84 ntBASIC0.38□□□□□ -2.35
LHX3Q9UBR4 AC243829.6-201ENST00000612652 106 ntBASIC0.38□□□□□ -2.35
LHX3Q9UBR4 SNORD18A-201ENST00000363753 72 ntBASIC0.37□□□□□ -2.35
LHX3Q9UBR4 Y_RNA.454-201ENST00000384224 113 ntBASIC0.37□□□□□ -2.35
LHX3Q9UBR4 RNU6-493P-201ENST00000391321 108 ntBASIC0.37□□□□□ -2.35
LHX3Q9UBR4 SNORD93-201ENST00000408813 74 ntBASIC0.37□□□□□ -2.35
LHX3Q9UBR4 LINC00345-201ENST00000443679 285 ntTSL 5 BASIC0.37□□□□□ -2.35
LHX3Q9UBR4 SNORD127-201ENST00000458892 86 ntBASIC0.37□□□□□ -2.35
LHX3Q9UBR4 AC002350.1-201ENST00000490759 375 ntBASIC0.37□□□□□ -2.35
LHX3Q9UBR4 MIR4744-201ENST00000581563 82 ntBASIC0.37□□□□□ -2.35
LHX3Q9UBR4 AL365205.2-201ENST00000594586 68 ntBASIC0.37□□□□□ -2.35
LHX3Q9UBR4 RNU2-4P-201ENST00000606190 192 ntBASIC0.37□□□□□ -2.35
LHX3Q9UBR4 Y_RNA.149-201ENST00000363558 117 ntBASIC0.36□□□□□ -2.35
LHX3Q9UBR4 SNORD27-201ENST00000363981 72 ntBASIC0.36□□□□□ -2.35
LHX3Q9UBR4 RNU6-1292P-201ENST00000383856 107 ntBASIC0.36□□□□□ -2.35
LHX3Q9UBR4 RNU6-738P-201ENST00000384531 106 ntBASIC0.36□□□□□ -2.35
LHX3Q9UBR4 SNORD100-201ENST00000408573 76 ntBASIC0.36□□□□□ -2.35
LHX3Q9UBR4 RNU6ATAC42P-201ENST00000408637 95 ntBASIC0.36□□□□□ -2.35
LHX3Q9UBR4 RNA5SP237-201ENST00000410414 113 ntBASIC0.36□□□□□ -2.35
LHX3Q9UBR4 RNU4-43P-201ENST00000410628 137 ntBASIC0.36□□□□□ -2.35
LHX3Q9UBR4 RPL39P25-201ENST00000449384 154 ntBASIC0.36□□□□□ -2.35
LHX3Q9UBR4 RNU7-70P-201ENST00000516941 66 ntBASIC0.36□□□□□ -2.35
LHX3Q9UBR4 IGHVIII-67-2-201ENST00000519849 88 ntBASIC0.36□□□□□ -2.35
LHX3Q9UBR4 MIR3152-201ENST00000579801 74 ntBASIC0.36□□□□□ -2.35
LHX3Q9UBR4 AC092634.7-201ENST00000621022 103 ntBASIC0.36□□□□□ -2.35
LHX3Q9UBR4 RNU6-923P-201ENST00000364753 107 ntBASIC0.35□□□□□ -2.35
LHX3Q9UBR4 Y_RNA.288-201ENST00000364854 92 ntBASIC0.35□□□□□ -2.35
LHX3Q9UBR4 VTRNA1-3-201ENST00000365645 89 ntBASIC0.35□□□□□ -2.35
LHX3Q9UBR4 SNORD116-25-201ENST00000516517 92 ntBASIC0.35□□□□□ -2.35
LHX3Q9UBR4 AL662814.1-201ENST00000617364 121 ntBASIC0.35□□□□□ -2.35
LHX3Q9UBR4 Y_RNA.65-201ENST00000362846 100 ntBASIC0.34□□□□□ -2.36
LHX3Q9UBR4 SNORA20-201ENST00000384662 132 ntBASIC0.34□□□□□ -2.36
LHX3Q9UBR4 RNU6-578P-201ENST00000390980 103 ntBASIC0.34□□□□□ -2.36
LHX3Q9UBR4 MIR548H3-201ENST00000408771 118 ntBASIC0.34□□□□□ -2.36
LHX3Q9UBR4 RNU4-83P-201ENST00000410863 133 ntBASIC0.34□□□□□ -2.36
LHX3Q9UBR4 AC023051.1-201ENST00000414098 876 ntTSL 5 BASIC0.34□□□□□ -2.36
LHX3Q9UBR4 AL358176.2-201ENST00000425769 204 ntBASIC0.34□□□□□ -2.36
LHX3Q9UBR4 Y_RNA.797-201ENST00000515977 94 ntBASIC0.34□□□□□ -2.36
LHX3Q9UBR4 SNORA25.12-201ENST00000516202 82 ntBASIC0.34□□□□□ -2.36
LHX3Q9UBR4 RNU6-448P-201ENST00000517052 107 ntBASIC0.34□□□□□ -2.36
LHX3Q9UBR4 MIR378D2-201ENST00000580636 98 ntBASIC0.34□□□□□ -2.36
LHX3Q9UBR4 MIRLET7D-201ENST00000362263 87 ntBASIC0.33□□□□□ -2.36
LHX3Q9UBR4 RNA5SP325-201ENST00000363756 130 ntBASIC0.33□□□□□ -2.36
LHX3Q9UBR4 RNU6-978P-201ENST00000364371 103 ntBASIC0.33□□□□□ -2.36
LHX3Q9UBR4 RNA5SP517-201ENST00000364724 117 ntBASIC0.33□□□□□ -2.36
LHX3Q9UBR4 RNY4P28-201ENST00000365281 93 ntBASIC0.33□□□□□ -2.36
LHX3Q9UBR4 RNA5SP117-201ENST00000365294 118 ntBASIC0.33□□□□□ -2.36
LHX3Q9UBR4 Y_RNA.430-201ENST00000384081 110 ntBASIC0.33□□□□□ -2.36
LHX3Q9UBR4 Y_RNA.477-201ENST00000384352 108 ntBASIC0.33□□□□□ -2.36
LHX3Q9UBR4 RNU6-1011P-201ENST00000384668 107 ntBASIC0.33□□□□□ -2.36
LHX3Q9UBR4 MTND2P23-201ENST00000422990 651 ntBASIC0.33□□□□□ -2.36
LHX3Q9UBR4 AC103879.1-201ENST00000503093 255 ntTSL 2 BASIC0.33□□□□□ -2.36
LHX3Q9UBR4 AL360085.1-201ENST00000604713 532 ntBASIC0.33□□□□□ -2.36
LHX3Q9UBR4 CEP290-203ENST00000547691 5968 ntTSL 1 (best) BASIC0.32□□□□□ -2.36
LHX3Q9UBR4 C9orf84-203ENST00000374287 4721 ntAPPRIS P3 TSL 5 BASIC0.32□□□□□ -2.36
LHX3Q9UBR4 SNORA22.1-201ENST00000362701 134 ntBASIC0.32□□□□□ -2.36
LHX3Q9UBR4 RNU6-403P-201ENST00000363163 104 ntBASIC0.32□□□□□ -2.36
LHX3Q9UBR4 RNA5SP457-201ENST00000363657 124 ntBASIC0.32□□□□□ -2.36
LHX3Q9UBR4 RNU4-16P-201ENST00000364737 141 ntBASIC0.32□□□□□ -2.36
LHX3Q9UBR4 Y_RNA.617-201ENST00000410920 90 ntBASIC0.32□□□□□ -2.36
LHX3Q9UBR4 SNORA62.5-201ENST00000516634 120 ntBASIC0.32□□□□□ -2.36
LHX3Q9UBR4 RNA5SP94-201ENST00000516917 108 ntBASIC0.32□□□□□ -2.36
LHX3Q9UBR4 MIR3678-201ENST00000578455 94 ntBASIC0.32□□□□□ -2.36
LHX3Q9UBR4 AC021613.1-201ENST00000623880 111 ntBASIC0.32□□□□□ -2.36
LHX3Q9UBR4 AC090625.1-201ENST00000357130 210 ntBASIC0.31□□□□□ -2.36
LHX3Q9UBR4 RNU6-694P-201ENST00000364071 147 ntBASIC0.31□□□□□ -2.36
LHX3Q9UBR4 U8.15-201ENST00000390947 134 ntBASIC0.31□□□□□ -2.36
LHX3Q9UBR4 RNA5SP127-201ENST00000411051 133 ntBASIC0.31□□□□□ -2.36
LHX3Q9UBR4 RNU6-1149P-201ENST00000516810 97 ntBASIC0.31□□□□□ -2.36
LHX3Q9UBR4 MIR8087-201ENST00000612745 78 ntBASIC0.31□□□□□ -2.36
LHX3Q9UBR4 MIR8066-201ENST00000617280 78 ntBASIC0.31□□□□□ -2.36
LHX3Q9UBR4 uc_338.16-201ENST00000621804 95 ntBASIC0.31□□□□□ -2.36
LHX3Q9UBR4 MIR330-201ENST00000362196 94 ntBASIC0.3□□□□□ -2.36
LHX3Q9UBR4 Y_RNA.42-201ENST00000362660 108 ntBASIC0.3□□□□□ -2.36
LHX3Q9UBR4 Y_RNA.85-201ENST00000363014 111 ntBASIC0.3□□□□□ -2.36
LHX3Q9UBR4 Y_RNA.182-201ENST00000363880 111 ntBASIC0.3□□□□□ -2.36
LHX3Q9UBR4 Y_RNA.539-201ENST00000384635 107 ntBASIC0.3□□□□□ -2.36
LHX3Q9UBR4 Y_RNA.562-201ENST00000384695 113 ntBASIC0.3□□□□□ -2.36
LHX3Q9UBR4 SNORA40.8-201ENST00000411034 126 ntBASIC0.3□□□□□ -2.36
LHX3Q9UBR4 SCARNA15-202ENST00000516881 127 ntBASIC0.3□□□□□ -2.36
LHX3Q9UBR4 AC133485.4-201ENST00000561835 220 ntBASIC0.3□□□□□ -2.36
LHX3Q9UBR4 AC141846.1-201ENST00000568348 142 ntBASIC0.3□□□□□ -2.36
LHX3Q9UBR4 MIR4308-201ENST00000580634 81 ntBASIC0.3□□□□□ -2.36
LHX3Q9UBR4 SNORA25.18-201ENST00000607153 114 ntBASIC0.3□□□□□ -2.36
LHX3Q9UBR4 MIR6841-201ENST00000637129 72 ntBASIC0.3□□□□□ -2.36
LHX3Q9UBR4 MIR103A1-201ENST00000362165 78 ntBASIC0.29□□□□□ -2.36
LHX3Q9UBR4 Y_RNA.13-201ENST00000362403 112 ntBASIC0.29□□□□□ -2.36
LHX3Q9UBR4 RNU6-643P-201ENST00000384018 107 ntBASIC0.29□□□□□ -2.36
LHX3Q9UBR4 Y_RNA.567-201ENST00000384736 106 ntBASIC0.29□□□□□ -2.36
LHX3Q9UBR4 Y_RNA.571-201ENST00000384753 98 ntBASIC0.29□□□□□ -2.36
LHX3Q9UBR4 MIR568-201ENST00000385036 95 ntBASIC0.29□□□□□ -2.36
LHX3Q9UBR4 MIR518A1-201ENST00000385068 85 ntBASIC0.29□□□□□ -2.36
Retrieved 100 of 98,524 protein–RNA pairs in 370.9 ms