Protein–RNA interactions for Protein: Q9NUD5

ZCCHC3, Zinc finger CCHC domain-containing protein 3, humanhuman

Known RBP Predictions only

Length 404 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZCCHC3Q9NUD5 Y_RNA.13-201ENST00000362403 112 ntBASIC0.2□□□□□ -2.38
ZCCHC3Q9NUD5 SNORA22.1-201ENST00000362701 134 ntBASIC0.2□□□□□ -2.38
ZCCHC3Q9NUD5 SNORA36.1-201ENST00000363424 132 ntBASIC0.2□□□□□ -2.38
ZCCHC3Q9NUD5 Y_RNA.574-201ENST00000384766 95 ntBASIC0.2□□□□□ -2.38
ZCCHC3Q9NUD5 Y_RNA.588-201ENST00000391254 102 ntBASIC0.2□□□□□ -2.38
ZCCHC3Q9NUD5 RNU7-70P-201ENST00000516941 66 ntBASIC0.2□□□□□ -2.38
ZCCHC3Q9NUD5 Y_RNA.720-201ENST00000517166 92 ntBASIC0.2□□□□□ -2.38
ZCCHC3Q9NUD5 MIR4431-201ENST00000579990 94 ntBASIC0.2□□□□□ -2.38
ZCCHC3Q9NUD5 MIR4744-201ENST00000581563 82 ntBASIC0.2□□□□□ -2.38
ZCCHC3Q9NUD5 MIR5093-201ENST00000583199 100 ntBASIC0.2□□□□□ -2.38
ZCCHC3Q9NUD5 MIR6082-201ENST00000613604 109 ntBASIC0.2□□□□□ -2.38
ZCCHC3Q9NUD5 AC022709.1-201ENST00000615967 87 ntBASIC0.2□□□□□ -2.38
ZCCHC3Q9NUD5 DEFB131A-201ENST00000334879 213 ntAPPRIS P1 TSL 1 (best) BASIC0.19□□□□□ -2.38
ZCCHC3Q9NUD5 RNA5SP62-201ENST00000363457 110 ntBASIC0.19□□□□□ -2.38
ZCCHC3Q9NUD5 AL512326.2-201ENST00000426359 151 ntBASIC0.19□□□□□ -2.38
ZCCHC3Q9NUD5 RNU6-469P-201ENST00000516253 101 ntBASIC0.19□□□□□ -2.38
ZCCHC3Q9NUD5 IGHVIII-67-2-201ENST00000519849 88 ntBASIC0.19□□□□□ -2.38
ZCCHC3Q9NUD5 AL442067.1-201ENST00000613261 223 ntBASIC0.19□□□□□ -2.38
ZCCHC3Q9NUD5 AL589743.1-201ENST00000551932 2712 ntBASIC0.19□□□□□ -2.38
ZCCHC3Q9NUD5 CEP290-203ENST00000547691 5968 ntTSL 1 (best) BASIC0.19□□□□□ -2.38
ZCCHC3Q9NUD5 Y_RNA.11-201ENST00000362375 109 ntBASIC0.18□□□□□ -2.38
ZCCHC3Q9NUD5 RNU6-403P-201ENST00000363163 104 ntBASIC0.18□□□□□ -2.38
ZCCHC3Q9NUD5 RNU6-978P-201ENST00000364371 103 ntBASIC0.18□□□□□ -2.38
ZCCHC3Q9NUD5 MIR518E-201ENST00000385252 88 ntBASIC0.18□□□□□ -2.38
ZCCHC3Q9NUD5 MIR644A-201ENST00000385262 94 ntBASIC0.18□□□□□ -2.38
ZCCHC3Q9NUD5 MIR548F4-201ENST00000408515 105 ntBASIC0.18□□□□□ -2.38
ZCCHC3Q9NUD5 AC096949.1-201ENST00000412047 152 ntBASIC0.18□□□□□ -2.38
ZCCHC3Q9NUD5 AL121914.1-201ENST00000450188 156 ntBASIC0.18□□□□□ -2.38
ZCCHC3Q9NUD5 SNORD116-25-201ENST00000516517 92 ntBASIC0.18□□□□□ -2.38
ZCCHC3Q9NUD5 RNU6-765P-201ENST00000516916 99 ntBASIC0.18□□□□□ -2.38
ZCCHC3Q9NUD5 MIR378D2-201ENST00000580636 98 ntBASIC0.18□□□□□ -2.38
ZCCHC3Q9NUD5 MIR4491-201ENST00000581087 68 ntBASIC0.18□□□□□ -2.38
ZCCHC3Q9NUD5 RNU6-349P-201ENST00000362402 107 ntBASIC0.17□□□□□ -2.38
ZCCHC3Q9NUD5 Y_RNA.76-201ENST00000362931 109 ntBASIC0.17□□□□□ -2.38
ZCCHC3Q9NUD5 Y_RNA.116-201ENST00000363292 103 ntBASIC0.17□□□□□ -2.38
ZCCHC3Q9NUD5 Y_RNA.292-201ENST00000364904 97 ntBASIC0.17□□□□□ -2.38
ZCCHC3Q9NUD5 RNU6-949P-201ENST00000384040 107 ntBASIC0.17□□□□□ -2.38
ZCCHC3Q9NUD5 SCARNA15-202ENST00000516881 127 ntBASIC0.17□□□□□ -2.38
ZCCHC3Q9NUD5 AP003072.1-201ENST00000531740 145 ntBASIC0.17□□□□□ -2.38
ZCCHC3Q9NUD5 RNA5SP127-201ENST00000411051 133 ntBASIC0.16□□□□□ -2.38
ZCCHC3Q9NUD5 AC006504.6-201ENST00000590142 199 ntBASIC0.16□□□□□ -2.38
ZCCHC3Q9NUD5 MIR6515-201ENST00000619843 57 ntBASIC0.16□□□□□ -2.38
ZCCHC3Q9NUD5 Y_RNA.32-201ENST00000362589 110 ntBASIC0.15□□□□□ -2.39
ZCCHC3Q9NUD5 Y_RNA.174-201ENST00000363781 105 ntBASIC0.15□□□□□ -2.39
ZCCHC3Q9NUD5 Y_RNA.277-201ENST00000364754 102 ntBASIC0.15□□□□□ -2.39
ZCCHC3Q9NUD5 SNORA18-201ENST00000384416 132 ntBASIC0.15□□□□□ -2.39
ZCCHC3Q9NUD5 RNU6-1160P-201ENST00000384546 104 ntBASIC0.15□□□□□ -2.39
ZCCHC3Q9NUD5 MIR624-201ENST00000385217 97 ntBASIC0.15□□□□□ -2.39
ZCCHC3Q9NUD5 RNU6ATAC4P-201ENST00000387446 126 ntBASIC0.15□□□□□ -2.39
ZCCHC3Q9NUD5 RNU6-578P-201ENST00000390980 103 ntBASIC0.15□□□□□ -2.39
ZCCHC3Q9NUD5 RNU5E-9P-201ENST00000411164 104 ntBASIC0.15□□□□□ -2.39
ZCCHC3Q9NUD5 AC073261.1-201ENST00000429409 121 ntBASIC0.15□□□□□ -2.39
ZCCHC3Q9NUD5 RNU6-893P-201ENST00000458841 100 ntBASIC0.15□□□□□ -2.39
ZCCHC3Q9NUD5 SNORA31.14-201ENST00000516728 116 ntBASIC0.15□□□□□ -2.39
ZCCHC3Q9NUD5 RNU6-135P-201ENST00000516769 101 ntBASIC0.15□□□□□ -2.39
ZCCHC3Q9NUD5 HOTAIR_3.1-201ENST00000611352 97 ntBASIC0.15□□□□□ -2.39
ZCCHC3Q9NUD5 Y_RNA.54-201ENST00000362766 105 ntBASIC0.14□□□□□ -2.39
ZCCHC3Q9NUD5 RNU6-1099P-201ENST00000363533 107 ntBASIC0.14□□□□□ -2.39
ZCCHC3Q9NUD5 Y_RNA.396-201ENST00000383949 103 ntBASIC0.14□□□□□ -2.39
ZCCHC3Q9NUD5 RNU6-815P-201ENST00000384080 113 ntBASIC0.14□□□□□ -2.39
ZCCHC3Q9NUD5 RNU2-59P-201ENST00000410482 191 ntBASIC0.14□□□□□ -2.39
ZCCHC3Q9NUD5 RNA5SP268-201ENST00000516828 124 ntBASIC0.14□□□□□ -2.39
ZCCHC3Q9NUD5 AC069113.3-201ENST00000521019 150 ntBASIC0.14□□□□□ -2.39
ZCCHC3Q9NUD5 MIR4315-1-201ENST00000636800 73 ntBASIC0.14□□□□□ -2.39
ZCCHC3Q9NUD5 MIR4315-2-201ENST00000640925 73 ntBASIC0.14□□□□□ -2.39
ZCCHC3Q9NUD5 SNORD114-23-201ENST00000363536 72 ntBASIC0.13□□□□□ -2.39
ZCCHC3Q9NUD5 RNY1P13-201ENST00000365030 105 ntBASIC0.13□□□□□ -2.39
ZCCHC3Q9NUD5 Y_RNA.515-201ENST00000384535 112 ntBASIC0.13□□□□□ -2.39
ZCCHC3Q9NUD5 RNU6-1149P-201ENST00000516810 97 ntBASIC0.13□□□□□ -2.39
ZCCHC3Q9NUD5 AC112693.2-201ENST00000556538 232 ntBASIC0.13□□□□□ -2.39
ZCCHC3Q9NUD5 Y_RNA.121-201ENST00000363309 113 ntBASIC0.12□□□□□ -2.39
ZCCHC3Q9NUD5 Y_RNA.269-201ENST00000364685 89 ntBASIC0.12□□□□□ -2.39
ZCCHC3Q9NUD5 Y_RNA.326-201ENST00000365176 113 ntBASIC0.12□□□□□ -2.39
ZCCHC3Q9NUD5 SNORA72.6-201ENST00000384520 129 ntBASIC0.12□□□□□ -2.39
ZCCHC3Q9NUD5 Y_RNA.536-201ENST00000384621 113 ntBASIC0.12□□□□□ -2.39
ZCCHC3Q9NUD5 RNA5SP299-201ENST00000391203 116 ntBASIC0.12□□□□□ -2.39
ZCCHC3Q9NUD5 MIR1295A-201ENST00000408463 79 ntBASIC0.12□□□□□ -2.39
ZCCHC3Q9NUD5 RNU6-1086P-201ENST00000410930 100 ntBASIC0.12□□□□□ -2.39
ZCCHC3Q9NUD5 RNY3P16-201ENST00000516338 101 ntBASIC0.12□□□□□ -2.39
ZCCHC3Q9NUD5 IST1-227ENST00000626438 126 ntTSL 5 BASIC0.12□□□□□ -2.39
ZCCHC3Q9NUD5 MIR6828-201ENST00000636181 60 ntBASIC0.12□□□□□ -2.39
ZCCHC3Q9NUD5 RNU4-16P-201ENST00000364737 141 ntBASIC0.11□□□□□ -2.39
ZCCHC3Q9NUD5 RNY4P28-201ENST00000365281 93 ntBASIC0.11□□□□□ -2.39
ZCCHC3Q9NUD5 Y_RNA.539-201ENST00000384635 107 ntBASIC0.11□□□□□ -2.39
ZCCHC3Q9NUD5 RNU6-291P-201ENST00000384720 107 ntBASIC0.11□□□□□ -2.39
ZCCHC3Q9NUD5 snoU13.18-201ENST00000459483 104 ntBASIC0.11□□□□□ -2.39
ZCCHC3Q9NUD5 SCARNA16.5-201ENST00000517114 183 ntBASIC0.11□□□□□ -2.39
ZCCHC3Q9NUD5 AL117187.1-201ENST00000555482 181 ntBASIC0.11□□□□□ -2.39
ZCCHC3Q9NUD5 Y_RNA.757-201ENST00000578934 114 ntBASIC0.11□□□□□ -2.39
ZCCHC3Q9NUD5 RNU2-4P-201ENST00000606190 192 ntBASIC0.11□□□□□ -2.39
ZCCHC3Q9NUD5 Y_RNA.308-201ENST00000365043 101 ntBASIC0.1□□□□□ -2.39
ZCCHC3Q9NUD5 MIR598-201ENST00000384868 97 ntBASIC0.1□□□□□ -2.39
ZCCHC3Q9NUD5 MIR548H3-201ENST00000408771 118 ntBASIC0.1□□□□□ -2.39
ZCCHC3Q9NUD5 Y_RNA.797-201ENST00000515977 94 ntBASIC0.1□□□□□ -2.39
ZCCHC3Q9NUD5 SNORA25.16-201ENST00000516741 121 ntBASIC0.1□□□□□ -2.39
ZCCHC3Q9NUD5 MIR7107-201ENST00000611489 80 ntBASIC0.1□□□□□ -2.39
ZCCHC3Q9NUD5 MIR924-201ENST00000638017 53 ntBASIC0.1□□□□□ -2.39
ZCCHC3Q9NUD5 Y_RNA.145-201ENST00000363527 102 ntBASIC0.09□□□□□ -2.4
ZCCHC3Q9NUD5 RNU6-643P-201ENST00000384018 107 ntBASIC0.09□□□□□ -2.4
ZCCHC3Q9NUD5 RNU6-535P-201ENST00000384722 107 ntBASIC0.09□□□□□ -2.4
Retrieved 100 of 98,524 protein–RNA pairs in 199.4 ms