Protein–RNA interactions for Protein: Q9NQT5

EXOSC3, Exosome complex component RRP40, humanhuman

Known RBP Predictions only

Length 275 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
EXOSC3Q9NQT5 AL662814.1-201ENST00000617364 121 ntBASIC0.39□□□□□ -2.35
EXOSC3Q9NQT5 OMD-201ENST00000375550 2449 ntAPPRIS P1 TSL 1 (best) BASIC0.38□□□□□ -2.35
EXOSC3Q9NQT5 RNU4-16P-201ENST00000364737 141 ntBASIC0.38□□□□□ -2.35
EXOSC3Q9NQT5 Y_RNA.556-201ENST00000384677 113 ntBASIC0.38□□□□□ -2.35
EXOSC3Q9NQT5 Y_RNA.571-201ENST00000384753 98 ntBASIC0.38□□□□□ -2.35
EXOSC3Q9NQT5 MIR1302-3-201ENST00000408128 138 ntBASIC0.38□□□□□ -2.35
EXOSC3Q9NQT5 SNORD100-201ENST00000408573 76 ntBASIC0.38□□□□□ -2.35
EXOSC3Q9NQT5 RNU4-83P-201ENST00000410863 133 ntBASIC0.38□□□□□ -2.35
EXOSC3Q9NQT5 AL118496.2-201ENST00000448300 230 ntBASIC0.38□□□□□ -2.35
EXOSC3Q9NQT5 RPL39P25-201ENST00000449384 154 ntBASIC0.38□□□□□ -2.35
EXOSC3Q9NQT5 Y_RNA.680-201ENST00000516441 93 ntBASIC0.38□□□□□ -2.35
EXOSC3Q9NQT5 RNU6-1149P-201ENST00000516810 97 ntBASIC0.38□□□□□ -2.35
EXOSC3Q9NQT5 SNORA4-201ENST00000584302 138 ntBASIC0.38□□□□□ -2.35
EXOSC3Q9NQT5 AC021613.1-201ENST00000623880 111 ntBASIC0.38□□□□□ -2.35
EXOSC3Q9NQT5 DEFB131A-201ENST00000334879 213 ntAPPRIS P1 TSL 1 (best) BASIC0.37□□□□□ -2.35
EXOSC3Q9NQT5 Y_RNA.20-201ENST00000362479 113 ntBASIC0.37□□□□□ -2.35
EXOSC3Q9NQT5 SNORA22.1-201ENST00000362701 134 ntBASIC0.37□□□□□ -2.35
EXOSC3Q9NQT5 Y_RNA.162-201ENST00000363683 102 ntBASIC0.37□□□□□ -2.35
EXOSC3Q9NQT5 Y_RNA.350-201ENST00000365409 98 ntBASIC0.37□□□□□ -2.35
EXOSC3Q9NQT5 RNU4-45P-201ENST00000365469 141 ntBASIC0.37□□□□□ -2.35
EXOSC3Q9NQT5 RNU6-1336P-201ENST00000383886 109 ntBASIC0.37□□□□□ -2.35
EXOSC3Q9NQT5 RNU6-643P-201ENST00000384018 107 ntBASIC0.37□□□□□ -2.35
EXOSC3Q9NQT5 Y_RNA.430-201ENST00000384081 110 ntBASIC0.37□□□□□ -2.35
EXOSC3Q9NQT5 CPEB3_ribozyme.1-201ENST00000408115 78 ntBASIC0.37□□□□□ -2.35
EXOSC3Q9NQT5 RNA5SP127-201ENST00000411051 133 ntBASIC0.37□□□□□ -2.35
EXOSC3Q9NQT5 AL162399.1-201ENST00000426090 130 ntTSL 3 BASIC0.37□□□□□ -2.35
EXOSC3Q9NQT5 LINC00345-201ENST00000443679 285 ntTSL 5 BASIC0.37□□□□□ -2.35
EXOSC3Q9NQT5 AC002350.1-201ENST00000490759 375 ntBASIC0.37□□□□□ -2.35
EXOSC3Q9NQT5 RN7SKP12-201ENST00000516275 143 ntBASIC0.37□□□□□ -2.35
EXOSC3Q9NQT5 SCARNA15-202ENST00000516881 127 ntBASIC0.37□□□□□ -2.35
EXOSC3Q9NQT5 DEFB131B-201ENST00000530210 213 ntAPPRIS P1 TSL 1 (best) BASIC0.37□□□□□ -2.35
EXOSC3Q9NQT5 MIR6513-201ENST00000621188 64 ntBASIC0.37□□□□□ -2.35
EXOSC3Q9NQT5 MIR6841-201ENST00000637129 72 ntBASIC0.37□□□□□ -2.35
EXOSC3Q9NQT5 Y_RNA.121-201ENST00000363309 113 ntBASIC0.36□□□□□ -2.35
EXOSC3Q9NQT5 RNU4-70P-201ENST00000384579 139 ntBASIC0.36□□□□□ -2.35
EXOSC3Q9NQT5 Y_RNA.617-201ENST00000410920 90 ntBASIC0.36□□□□□ -2.35
EXOSC3Q9NQT5 AC141846.1-201ENST00000568348 142 ntBASIC0.36□□□□□ -2.35
EXOSC3Q9NQT5 AC092634.7-201ENST00000621022 103 ntBASIC0.36□□□□□ -2.35
EXOSC3Q9NQT5 Y_RNA.60-201ENST00000362831 98 ntBASIC0.35□□□□□ -2.35
EXOSC3Q9NQT5 RNU6-403P-201ENST00000363163 104 ntBASIC0.35□□□□□ -2.35
EXOSC3Q9NQT5 RNA5SP117-201ENST00000365294 118 ntBASIC0.35□□□□□ -2.35
EXOSC3Q9NQT5 SNORA50A-201ENST00000384225 134 ntBASIC0.35□□□□□ -2.35
EXOSC3Q9NQT5 U8.15-201ENST00000390947 134 ntBASIC0.35□□□□□ -2.35
EXOSC3Q9NQT5 RNA5SP247-201ENST00000411181 105 ntBASIC0.35□□□□□ -2.35
EXOSC3Q9NQT5 RNU6-1045P-201ENST00000516321 107 ntBASIC0.35□□□□□ -2.35
EXOSC3Q9NQT5 RNU6-448P-201ENST00000517052 107 ntBASIC0.35□□□□□ -2.35
EXOSC3Q9NQT5 AC062037.2-201ENST00000610137 73 ntBASIC0.35□□□□□ -2.35
EXOSC3Q9NQT5 MIR8066-201ENST00000617280 78 ntBASIC0.35□□□□□ -2.35
EXOSC3Q9NQT5 C9orf84-203ENST00000374287 4721 ntAPPRIS P3 TSL 5 BASIC0.35□□□□□ -2.35
EXOSC3Q9NQT5 MTND5P32-201ENST00000560711 1802 ntBASIC0.34□□□□□ -2.35
EXOSC3Q9NQT5 Y_RNA.13-201ENST00000362403 112 ntBASIC0.34□□□□□ -2.36
EXOSC3Q9NQT5 RNA5SP517-201ENST00000364724 117 ntBASIC0.34□□□□□ -2.36
EXOSC3Q9NQT5 RNU6-275P-201ENST00000364910 107 ntBASIC0.34□□□□□ -2.36
EXOSC3Q9NQT5 Y_RNA.412-201ENST00000384001 104 ntBASIC0.34□□□□□ -2.36
EXOSC3Q9NQT5 MIR624-201ENST00000385217 97 ntBASIC0.34□□□□□ -2.36
EXOSC3Q9NQT5 SNORD58.1-201ENST00000391313 66 ntBASIC0.34□□□□□ -2.36
EXOSC3Q9NQT5 RNA5SP94-201ENST00000516917 108 ntBASIC0.34□□□□□ -2.36
EXOSC3Q9NQT5 RNU6-111P-201ENST00000517179 105 ntBASIC0.34□□□□□ -2.36
EXOSC3Q9NQT5 MRPS18CP4-201ENST00000535821 231 ntBASIC0.34□□□□□ -2.36
EXOSC3Q9NQT5 MIR3678-201ENST00000578455 94 ntBASIC0.34□□□□□ -2.36
EXOSC3Q9NQT5 CLRN1-AS1.1-201ENST00000615643 79 ntBASIC0.34□□□□□ -2.36
EXOSC3Q9NQT5 U6.106-201ENST00000636360 105 ntBASIC0.34□□□□□ -2.36
EXOSC3Q9NQT5 AL589743.1-201ENST00000551932 2712 ntBASIC0.33□□□□□ -2.36
EXOSC3Q9NQT5 Y_RNA.42-201ENST00000362660 108 ntBASIC0.33□□□□□ -2.36
EXOSC3Q9NQT5 SNORA25.7-201ENST00000364375 127 ntBASIC0.33□□□□□ -2.36
EXOSC3Q9NQT5 SNORA18-201ENST00000384416 132 ntBASIC0.33□□□□□ -2.36
EXOSC3Q9NQT5 RNU6-342P-201ENST00000384521 104 ntBASIC0.33□□□□□ -2.36
EXOSC3Q9NQT5 AC097716.1-201ENST00000509136 180 ntTSL 2 BASIC0.33□□□□□ -2.36
EXOSC3Q9NQT5 SNORA25.12-201ENST00000516202 82 ntBASIC0.33□□□□□ -2.36
EXOSC3Q9NQT5 AC243829.3-201ENST00000622177 108 ntBASIC0.33□□□□□ -2.36
EXOSC3Q9NQT5 MIR5087-201ENST00000635826 76 ntBASIC0.33□□□□□ -2.36
EXOSC3Q9NQT5 MIRLET7D-201ENST00000362263 87 ntBASIC0.32□□□□□ -2.36
EXOSC3Q9NQT5 Y_RNA.226-201ENST00000364337 114 ntBASIC0.32□□□□□ -2.36
EXOSC3Q9NQT5 Y_RNA.478-201ENST00000384358 107 ntBASIC0.32□□□□□ -2.36
EXOSC3Q9NQT5 SNORA72.6-201ENST00000384520 129 ntBASIC0.32□□□□□ -2.36
EXOSC3Q9NQT5 Y_RNA.521-201ENST00000384560 114 ntBASIC0.32□□□□□ -2.36
EXOSC3Q9NQT5 RNU4-71P-201ENST00000516258 113 ntBASIC0.32□□□□□ -2.36
EXOSC3Q9NQT5 RNA5SP220-201ENST00000516298 104 ntBASIC0.32□□□□□ -2.36
EXOSC3Q9NQT5 RNU6-1258P-201ENST00000516911 111 ntBASIC0.32□□□□□ -2.36
EXOSC3Q9NQT5 AC133485.4-201ENST00000561835 220 ntBASIC0.32□□□□□ -2.36
EXOSC3Q9NQT5 MIR4711-201ENST00000578274 70 ntBASIC0.32□□□□□ -2.36
EXOSC3Q9NQT5 AL078603.1-201ENST00000603824 313 ntBASIC0.32□□□□□ -2.36
EXOSC3Q9NQT5 SNORA25.18-201ENST00000607153 114 ntBASIC0.32□□□□□ -2.36
EXOSC3Q9NQT5 FAM19A1-204ENST00000617084 159 ntTSL 5 BASIC0.32□□□□□ -2.36
EXOSC3Q9NQT5 U4.1-201ENST00000620349 87 ntBASIC0.32□□□□□ -2.36
EXOSC3Q9NQT5 ANGPTL3-201ENST00000371129 2805 ntAPPRIS P1 TSL 1 (best) BASIC0.31□□□□□ -2.36
EXOSC3Q9NQT5 Y_RNA.171-201ENST00000363760 102 ntBASIC0.31□□□□□ -2.36
EXOSC3Q9NQT5 SNORA20.1-201ENST00000364790 130 ntBASIC0.31□□□□□ -2.36
EXOSC3Q9NQT5 Y_RNA.307-201ENST00000365022 117 ntBASIC0.31□□□□□ -2.36
EXOSC3Q9NQT5 Y_RNA.447-201ENST00000384184 113 ntBASIC0.31□□□□□ -2.36
EXOSC3Q9NQT5 RNU6-574P-201ENST00000384265 107 ntBASIC0.31□□□□□ -2.36
EXOSC3Q9NQT5 Y_RNA.567-201ENST00000384736 106 ntBASIC0.31□□□□□ -2.36
EXOSC3Q9NQT5 MIR644A-201ENST00000385262 94 ntBASIC0.31□□□□□ -2.36
EXOSC3Q9NQT5 Y_RNA.588-201ENST00000391254 102 ntBASIC0.31□□□□□ -2.36
EXOSC3Q9NQT5 MTND3P2-201ENST00000438452 342 ntBASIC0.31□□□□□ -2.36
EXOSC3Q9NQT5 RNU6-1023P-201ENST00000516137 106 ntBASIC0.31□□□□□ -2.36
EXOSC3Q9NQT5 MIR4503-201ENST00000582187 83 ntBASIC0.31□□□□□ -2.36
EXOSC3Q9NQT5 AC243829.6-201ENST00000612652 106 ntBASIC0.31□□□□□ -2.36
EXOSC3Q9NQT5 Y_RNA.75-201ENST00000362927 97 ntBASIC0.3□□□□□ -2.36
EXOSC3Q9NQT5 RNU6-702P-201ENST00000364982 107 ntBASIC0.3□□□□□ -2.36
Retrieved 100 of 98,524 protein–RNA pairs in 114.3 ms