Protein–RNA interactions for Protein: Q9H4Z3

PCIF1, Phosphorylated CTD-interacting factor 1, humanhuman

Predictions only

Length 704 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCIF1Q9H4Z3 SNORD53B-201ENST00000577887 78 ntBASIC1.67□□□□□ -2.14
PCIF1Q9H4Z3 MIR4303-201ENST00000581299 66 ntBASIC1.67□□□□□ -2.14
PCIF1Q9H4Z3 SNORD115-2-201ENST00000362842 82 ntBASIC1.66□□□□□ -2.14
PCIF1Q9H4Z3 RNA5SP264-201ENST00000363115 107 ntBASIC1.66□□□□□ -2.14
PCIF1Q9H4Z3 RNU6-60P-201ENST00000364792 103 ntBASIC1.66□□□□□ -2.14
PCIF1Q9H4Z3 SNORD115-20-201ENST00000365099 82 ntBASIC1.66□□□□□ -2.14
PCIF1Q9H4Z3 RNU6-215P-201ENST00000365169 102 ntBASIC1.66□□□□□ -2.14
PCIF1Q9H4Z3 SNORD20-201ENST00000384550 80 ntBASIC1.66□□□□□ -2.14
PCIF1Q9H4Z3 SNORA67.5-201ENST00000391036 107 ntBASIC1.66□□□□□ -2.14
PCIF1Q9H4Z3 AL031386.1-201ENST00000411940 142 ntTSL 5 BASIC1.66□□□□□ -2.14
PCIF1Q9H4Z3 RPL31P63-201ENST00000422565 375 ntBASIC1.66□□□□□ -2.14
PCIF1Q9H4Z3 AC048334.1-201ENST00000477975 159 ntBASIC1.66□□□□□ -2.14
PCIF1Q9H4Z3 MIR4285-201ENST00000581001 85 ntBASIC1.66□□□□□ -2.14
PCIF1Q9H4Z3 RNU6-1325P-201ENST00000364905 105 ntBASIC1.65□□□□□ -2.15
PCIF1Q9H4Z3 SNORD116-21-201ENST00000384507 92 ntBASIC1.65□□□□□ -2.15
PCIF1Q9H4Z3 SNORD38B-201ENST00000384690 67 ntBASIC1.65□□□□□ -2.15
PCIF1Q9H4Z3 AC023790.1-201ENST00000482174 347 ntBASIC1.65□□□□□ -2.15
PCIF1Q9H4Z3 RNA5SP33-201ENST00000516687 98 ntBASIC1.65□□□□□ -2.15
PCIF1Q9H4Z3 MIR3163-201ENST00000581592 73 ntBASIC1.65□□□□□ -2.15
PCIF1Q9H4Z3 MIR548AE2-201ENST00000583456 67 ntBASIC1.65□□□□□ -2.15
PCIF1Q9H4Z3 SNORD38B-202ENST00000625943 69 ntBASIC1.65□□□□□ -2.15
PCIF1Q9H4Z3 Y_RNA.35-201ENST00000362601 101 ntBASIC1.64□□□□□ -2.15
PCIF1Q9H4Z3 Y_RNA.354-201ENST00000365448 111 ntBASIC1.64□□□□□ -2.15
PCIF1Q9H4Z3 RNU6-342P-201ENST00000384521 104 ntBASIC1.64□□□□□ -2.15
PCIF1Q9H4Z3 SNORD12C-201ENST00000386307 89 ntBASIC1.64□□□□□ -2.15
PCIF1Q9H4Z3 AC244023.1-201ENST00000426884 112 ntBASIC1.64□□□□□ -2.15
PCIF1Q9H4Z3 MIR1270-201ENST00000459320 83 ntBASIC1.64□□□□□ -2.15
PCIF1Q9H4Z3 SNORA31.2-201ENST00000516019 134 ntBASIC1.64□□□□□ -2.15
PCIF1Q9H4Z3 AC242498.1-201ENST00000604134 111 ntBASIC1.64□□□□□ -2.15
PCIF1Q9H4Z3 AL035470.1-201ENST00000622571 220 ntBASIC1.64□□□□□ -2.15
PCIF1Q9H4Z3 UGP2-230ENST00000626380 276 ntTSL 5 BASIC1.64□□□□□ -2.15
PCIF1Q9H4Z3 MIR6516-201ENST00000630554 81 ntBASIC1.64□□□□□ -2.15
PCIF1Q9H4Z3 LMBR1-222ENST00000638959 93 ntTSL 5 BASIC1.64□□□□□ -2.15
PCIF1Q9H4Z3 SKIL-204ENST00000458537 7182 ntAPPRIS P1 TSL 1 (best) BASIC1.64□□□□□ -2.15
PCIF1Q9H4Z3 RNU6-396P-201ENST00000365369 105 ntBASIC1.63□□□□□ -2.15
PCIF1Q9H4Z3 RNU6-880P-201ENST00000384526 107 ntBASIC1.63□□□□□ -2.15
PCIF1Q9H4Z3 RNU6ATAC2P-201ENST00000387943 126 ntBASIC1.63□□□□□ -2.15
PCIF1Q9H4Z3 MIR759-201ENST00000390224 91 ntBASIC1.63□□□□□ -2.15
PCIF1Q9H4Z3 SNORA67.6-201ENST00000391093 99 ntBASIC1.63□□□□□ -2.15
PCIF1Q9H4Z3 RNU6-1054P-201ENST00000411293 104 ntBASIC1.63□□□□□ -2.15
PCIF1Q9H4Z3 AC009093.3-203ENST00000565800 121 ntTSL 2 BASIC1.63□□□□□ -2.15
PCIF1Q9H4Z3 RNU6-654P-201ENST00000364373 107 ntBASIC1.62□□□□□ -2.15
PCIF1Q9H4Z3 SNORA32-201ENST00000384072 121 ntBASIC1.62□□□□□ -2.15
PCIF1Q9H4Z3 SNORA18-201ENST00000384416 132 ntBASIC1.62□□□□□ -2.15
PCIF1Q9H4Z3 Y_RNA.549-201ENST00000384657 102 ntBASIC1.62□□□□□ -2.15
PCIF1Q9H4Z3 MIR517C-201ENST00000385103 95 ntBASIC1.62□□□□□ -2.15
PCIF1Q9H4Z3 AL354695.1-201ENST00000427935 228 ntBASIC1.62□□□□□ -2.15
PCIF1Q9H4Z3 RNU6-589P-201ENST00000516485 107 ntBASIC1.62□□□□□ -2.15
PCIF1Q9H4Z3 MIR2115-201ENST00000516657 100 ntBASIC1.62□□□□□ -2.15
PCIF1Q9H4Z3 RNU7-6P-201ENST00000516845 62 ntBASIC1.62□□□□□ -2.15
PCIF1Q9H4Z3 AC007012.1-201ENST00000567192 175 ntBASIC1.62□□□□□ -2.15
PCIF1Q9H4Z3 AC008781.2-201ENST00000502205 2480 ntTSL 1 (best) BASIC1.62□□□□□ -2.15
PCIF1Q9H4Z3 ZNF260-205ENST00000593142 4047 ntAPPRIS P1 TSL 1 (best) BASIC1.61□□□□□ -2.15
PCIF1Q9H4Z3 Y_RNA.140-201ENST00000363474 103 ntBASIC1.61□□□□□ -2.15
PCIF1Q9H4Z3 Y_RNA.299-201ENST00000364973 94 ntBASIC1.61□□□□□ -2.15
PCIF1Q9H4Z3 Y_RNA.363-201ENST00000365529 113 ntBASIC1.61□□□□□ -2.15
PCIF1Q9H4Z3 MIR548D2-201ENST00000384955 97 ntBASIC1.61□□□□□ -2.15
PCIF1Q9H4Z3 MIR320A-201ENST00000385302 82 ntBASIC1.61□□□□□ -2.15
PCIF1Q9H4Z3 RNU4-69P-201ENST00000410677 143 ntBASIC1.61□□□□□ -2.15
PCIF1Q9H4Z3 AC024382.1-201ENST00000520224 292 ntTSL 3 BASIC1.61□□□□□ -2.15
PCIF1Q9H4Z3 AC087741.2-201ENST00000619415 172 ntBASIC1.61□□□□□ -2.15
PCIF1Q9H4Z3 KTN1-205ENST00000395314 4618 ntAPPRIS P4 TSL 1 (best) BASIC1.61□□□□□ -2.15
PCIF1Q9H4Z3 RNY4P6-201ENST00000363667 96 ntBASIC1.6□□□□□ -2.15
PCIF1Q9H4Z3 Y_RNA.344-201ENST00000365381 112 ntBASIC1.6□□□□□ -2.15
PCIF1Q9H4Z3 Y_RNA.362-201ENST00000365518 110 ntBASIC1.6□□□□□ -2.15
PCIF1Q9H4Z3 RNU6-205P-201ENST00000390858 107 ntBASIC1.6□□□□□ -2.15
PCIF1Q9H4Z3 RNA5SP95-201ENST00000410319 137 ntBASIC1.6□□□□□ -2.15
PCIF1Q9H4Z3 RNU6-613P-201ENST00000410412 108 ntBASIC1.6□□□□□ -2.15
PCIF1Q9H4Z3 RNU11-2P-201ENST00000516898 142 ntBASIC1.6□□□□□ -2.15
PCIF1Q9H4Z3 MIR4498-201ENST00000577599 66 ntBASIC1.6□□□□□ -2.15
PCIF1Q9H4Z3 MIR4264-201ENST00000583520 66 ntBASIC1.6□□□□□ -2.15
PCIF1Q9H4Z3 GNPDA2-204ENST00000509756 5382 ntAPPRIS ALT1 TSL 1 (best) BASIC1.59□□□□□ -2.15
PCIF1Q9H4Z3 AL391516.1-201ENST00000554380 2449 ntBASIC1.59□□□□□ -2.15
PCIF1Q9H4Z3 Y_RNA.338-201ENST00000365320 114 ntBASIC1.59□□□□□ -2.15
PCIF1Q9H4Z3 MT-TN-201ENST00000387400 73 ntBASIC1.59□□□□□ -2.15
PCIF1Q9H4Z3 SNORA75.2-201ENST00000391138 150 ntBASIC1.59□□□□□ -2.15
PCIF1Q9H4Z3 SNORA75.3-201ENST00000391231 150 ntBASIC1.59□□□□□ -2.15
PCIF1Q9H4Z3 RNU4-62P-201ENST00000410125 130 ntBASIC1.59□□□□□ -2.15
PCIF1Q9H4Z3 AC108667.1-201ENST00000428618 249 ntBASIC1.59□□□□□ -2.15
PCIF1Q9H4Z3 Y_RNA.709-201ENST00000516952 92 ntBASIC1.59□□□□□ -2.15
PCIF1Q9H4Z3 SNORA31.24-201ENST00000517232 57 ntBASIC1.59□□□□□ -2.15
PCIF1Q9H4Z3 AP000753.3-201ENST00000604083 169 ntBASIC1.59□□□□□ -2.15
PCIF1Q9H4Z3 snoU13.2-201ENST00000459201 104 ntBASIC1.58□□□□□ -2.16
PCIF1Q9H4Z3 AC108729.3-201ENST00000513484 108 ntBASIC1.58□□□□□ -2.16
PCIF1Q9H4Z3 RNU6-919P-201ENST00000516731 104 ntBASIC1.58□□□□□ -2.16
PCIF1Q9H4Z3 AC022596.1-201ENST00000582895 302 ntTSL 5 BASIC1.58□□□□□ -2.16
PCIF1Q9H4Z3 MIR6740-201ENST00000618268 113 ntBASIC1.58□□□□□ -2.16
PCIF1Q9H4Z3 UBE3A-225ENST00000636667 5726 ntTSL 5 BASIC1.58□□□□□ -2.16
PCIF1Q9H4Z3 AL161722.3-201ENST00000605789 2983 ntBASIC1.57□□□□□ -2.16
PCIF1Q9H4Z3 MIR377-201ENST00000362145 69 ntBASIC1.57□□□□□ -2.16
PCIF1Q9H4Z3 MIR378A-201ENST00000362177 66 ntBASIC1.57□□□□□ -2.16
PCIF1Q9H4Z3 SNORD115-19-201ENST00000363098 82 ntBASIC1.57□□□□□ -2.16
PCIF1Q9H4Z3 SNORD115-18-201ENST00000363293 82 ntBASIC1.57□□□□□ -2.16
PCIF1Q9H4Z3 SNORD115-17-201ENST00000364612 82 ntBASIC1.57□□□□□ -2.16
PCIF1Q9H4Z3 RNU6-1237P-201ENST00000384777 107 ntBASIC1.57□□□□□ -2.16
PCIF1Q9H4Z3 MIR588-201ENST00000384900 83 ntBASIC1.57□□□□□ -2.16
PCIF1Q9H4Z3 RNY4P18-201ENST00000391107 89 ntBASIC1.57□□□□□ -2.16
PCIF1Q9H4Z3 AL035461.1-201ENST00000421490 332 ntBASIC1.57□□□□□ -2.16
PCIF1Q9H4Z3 AC063976.4-201ENST00000421971 163 ntBASIC1.57□□□□□ -2.16
PCIF1Q9H4Z3 Y_RNA.676-201ENST00000516393 96 ntBASIC1.57□□□□□ -2.16
Retrieved 100 of 98,524 protein–RNA pairs in 307.9 ms