Protein–RNA interactions for Protein: Q9H422

HIPK3, Homeodomain-interacting protein kinase 3, humanhuman

Predictions only

Length 1,215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIPK3Q9H422 RNA5SP261-201ENST00000410536 106 ntBASIC1.22□□□□□ -2.21
HIPK3Q9H422 Y_RNA.651-201ENST00000459380 103 ntBASIC1.22□□□□□ -2.21
HIPK3Q9H422 AL022345.2-201ENST00000606307 135 ntBASIC1.22□□□□□ -2.21
HIPK3Q9H422 AC011603.4-201ENST00000611325 277 ntBASIC1.22□□□□□ -2.21
HIPK3Q9H422 MIR6717-201ENST00000622747 73 ntBASIC1.22□□□□□ -2.21
HIPK3Q9H422 AC021613.1-201ENST00000623880 111 ntBASIC1.22□□□□□ -2.21
HIPK3Q9H422 AC010332.2-201ENST00000613083 1904 ntBASIC1.22□□□□□ -2.21
HIPK3Q9H422 AC108866.1-201ENST00000503073 2339 ntTSL 5 BASIC1.22□□□□□ -2.21
HIPK3Q9H422 FAM135A-203ENST00000370479 5930 ntTSL 1 (best) BASIC1.21□□□□□ -2.22
HIPK3Q9H422 SNORA1.1-201ENST00000364671 133 ntBASIC1.21□□□□□ -2.22
HIPK3Q9H422 RNU6-187P-201ENST00000384139 106 ntBASIC1.21□□□□□ -2.22
HIPK3Q9H422 SNORA75.2-201ENST00000391138 150 ntBASIC1.21□□□□□ -2.22
HIPK3Q9H422 SNORA75.3-201ENST00000391231 150 ntBASIC1.21□□□□□ -2.22
HIPK3Q9H422 SUMO1P3-201ENST00000439961 304 ntBASIC1.21□□□□□ -2.22
HIPK3Q9H422 SNORA70.22-201ENST00000517160 124 ntBASIC1.21□□□□□ -2.22
HIPK3Q9H422 MIR3152-201ENST00000579801 74 ntBASIC1.21□□□□□ -2.22
HIPK3Q9H422 SEPT14P17-201ENST00000617978 177 ntBASIC1.21□□□□□ -2.22
HIPK3Q9H422 MIR6516-201ENST00000630554 81 ntBASIC1.21□□□□□ -2.22
HIPK3Q9H422 RNU4-16P-201ENST00000364737 141 ntBASIC1.2□□□□□ -2.22
HIPK3Q9H422 SNORA80D-201ENST00000384488 135 ntBASIC1.2□□□□□ -2.22
HIPK3Q9H422 RNU6-602P-201ENST00000411155 105 ntBASIC1.2□□□□□ -2.22
HIPK3Q9H422 RNA5SP436-201ENST00000516020 115 ntBASIC1.2□□□□□ -2.22
HIPK3Q9H422 SNORD79.1-201ENST00000516069 84 ntBASIC1.2□□□□□ -2.22
HIPK3Q9H422 Y_RNA.692-201ENST00000516627 105 ntBASIC1.2□□□□□ -2.22
HIPK3Q9H422 MIR2115-201ENST00000516657 100 ntBASIC1.2□□□□□ -2.22
HIPK3Q9H422 AC004148.1-201ENST00000571506 398 ntTSL 5 BASIC1.2□□□□□ -2.22
HIPK3Q9H422 MIR3121-201ENST00000579680 77 ntBASIC1.2□□□□□ -2.22
HIPK3Q9H422 MGAT4C-209ENST00000611864 25116 ntAPPRIS P1 TSL 5 BASIC1.2□□□□□ -2.22
HIPK3Q9H422 C9orf84-201ENST00000318737 4661 ntAPPRIS P3 TSL 1 (best) BASIC1.2□□□□□ -2.22
HIPK3Q9H422 Y_RNA.430-201ENST00000384081 110 ntBASIC1.19□□□□□ -2.22
HIPK3Q9H422 SNORA25-201ENST00000384384 134 ntBASIC1.19□□□□□ -2.22
HIPK3Q9H422 SNORD38B-201ENST00000384690 67 ntBASIC1.19□□□□□ -2.22
HIPK3Q9H422 CPEB3_ribozyme.1-201ENST00000408115 78 ntBASIC1.19□□□□□ -2.22
HIPK3Q9H422 RNU6-257P-201ENST00000410238 98 ntBASIC1.19□□□□□ -2.22
HIPK3Q9H422 RPS3AP1-201ENST00000413190 320 ntBASIC1.19□□□□□ -2.22
HIPK3Q9H422 AL591704.2-201ENST00000421658 181 ntBASIC1.19□□□□□ -2.22
HIPK3Q9H422 MTND4LP9-201ENST00000427694 174 ntBASIC1.19□□□□□ -2.22
HIPK3Q9H422 RNU7-21P-201ENST00000459430 62 ntBASIC1.19□□□□□ -2.22
HIPK3Q9H422 AC211469.2-201ENST00000605461 205 ntBASIC1.19□□□□□ -2.22
HIPK3Q9H422 SNORD38B-202ENST00000625943 69 ntBASIC1.19□□□□□ -2.22
HIPK3Q9H422 C9orf84-205ENST00000394779 5060 ntAPPRIS ALT2 TSL 2 BASIC1.18□□□□□ -2.22
HIPK3Q9H422 RNU6-654P-201ENST00000364373 107 ntBASIC1.18□□□□□ -2.22
HIPK3Q9H422 Y_RNA.330-201ENST00000365230 109 ntBASIC1.18□□□□□ -2.22
HIPK3Q9H422 RNU6-690P-201ENST00000365242 106 ntBASIC1.18□□□□□ -2.22
HIPK3Q9H422 SNORD50.2-201ENST00000365465 70 ntBASIC1.18□□□□□ -2.22
HIPK3Q9H422 RNU6-613P-201ENST00000410412 108 ntBASIC1.18□□□□□ -2.22
HIPK3Q9H422 AC244023.1-201ENST00000426884 112 ntBASIC1.18□□□□□ -2.22
HIPK3Q9H422 RNU5E-3P-201ENST00000515913 68 ntBASIC1.18□□□□□ -2.22
HIPK3Q9H422 RNU6-240P-201ENST00000516098 97 ntBASIC1.18□□□□□ -2.22
HIPK3Q9H422 AC242498.1-201ENST00000604134 111 ntBASIC1.18□□□□□ -2.22
HIPK3Q9H422 U7.2-201ENST00000607576 63 ntBASIC1.18□□□□□ -2.22
HIPK3Q9H422 MIR6841-201ENST00000637129 72 ntBASIC1.18□□□□□ -2.22
HIPK3Q9H422 CEP162-202ENST00000403245 5156 ntAPPRIS P1 TSL 5 BASIC1.18□□□□□ -2.22
HIPK3Q9H422 MT-TN-201ENST00000387400 73 ntBASIC1.17□□□□□ -2.22
HIPK3Q9H422 SNORA40-201ENST00000388090 126 ntBASIC1.17□□□□□ -2.22
HIPK3Q9H422 AL603908.1-201ENST00000406098 201 ntBASIC1.17□□□□□ -2.22
HIPK3Q9H422 AC013248.1-201ENST00000455092 232 ntTSL 3 BASIC1.17□□□□□ -2.22
HIPK3Q9H422 TUG1_4.1-201ENST00000619464 181 ntBASIC1.17□□□□□ -2.22
HIPK3Q9H422 MIR373-201ENST00000362273 69 ntBASIC1.16□□□□□ -2.22
HIPK3Q9H422 SNORA22.1-201ENST00000362701 134 ntBASIC1.16□□□□□ -2.22
HIPK3Q9H422 RNU6-704P-201ENST00000364162 103 ntBASIC1.16□□□□□ -2.22
HIPK3Q9H422 TRAJ3-201ENST00000390534 62 ntAPPRIS P1 BASIC1.16□□□□□ -2.22
HIPK3Q9H422 SNORD12-201ENST00000391002 90 ntBASIC1.16□□□□□ -2.22
HIPK3Q9H422 MIR1285-1-201ENST00000408593 84 ntBASIC1.16□□□□□ -2.22
HIPK3Q9H422 POLR2J4-204ENST00000418424 324 ntBASIC1.16□□□□□ -2.22
HIPK3Q9H422 AL353614.1-201ENST00000445631 206 ntTSL 5 BASIC1.16□□□□□ -2.22
HIPK3Q9H422 RNU7-40P-201ENST00000516397 64 ntBASIC1.16□□□□□ -2.22
HIPK3Q9H422 AP000753.3-201ENST00000604083 169 ntBASIC1.16□□□□□ -2.22
HIPK3Q9H422 AC027335.2-201ENST00000624030 375 ntBASIC1.16□□□□□ -2.22
HIPK3Q9H422 IST1-227ENST00000626438 126 ntTSL 5 BASIC1.16□□□□□ -2.22
HIPK3Q9H422 CEP290-201ENST00000309041 7616 ntAPPRIS ALT1 TSL 5 BASIC1.15□□□□□ -2.22
HIPK3Q9H422 Y_RNA.114-201ENST00000363265 113 ntBASIC1.15□□□□□ -2.23
HIPK3Q9H422 Y_RNA.205-201ENST00000364128 113 ntBASIC1.15□□□□□ -2.23
HIPK3Q9H422 Y_RNA.294-201ENST00000364916 102 ntBASIC1.15□□□□□ -2.23
HIPK3Q9H422 Y_RNA.586-201ENST00000391146 98 ntBASIC1.15□□□□□ -2.23
HIPK3Q9H422 RNA5SP95-201ENST00000410319 137 ntBASIC1.15□□□□□ -2.23
HIPK3Q9H422 RNA5SP144-201ENST00000410846 116 ntBASIC1.15□□□□□ -2.23
HIPK3Q9H422 AC073127.1-201ENST00000447336 333 ntTSL 3 BASIC1.15□□□□□ -2.23
HIPK3Q9H422 RNU6-893P-201ENST00000458841 100 ntBASIC1.15□□□□□ -2.23
HIPK3Q9H422 RNU7-90P-201ENST00000459216 62 ntBASIC1.15□□□□□ -2.23
HIPK3Q9H422 AC133485.4-201ENST00000561835 220 ntBASIC1.15□□□□□ -2.23
HIPK3Q9H422 AC138907.4-201ENST00000570107 226 ntBASIC1.15□□□□□ -2.23
HIPK3Q9H422 MIR5000-201ENST00000577717 103 ntBASIC1.15□□□□□ -2.23
HIPK3Q9H422 Y_RNA.757-201ENST00000578934 114 ntBASIC1.15□□□□□ -2.23
HIPK3Q9H422 MIR4264-201ENST00000583520 66 ntBASIC1.15□□□□□ -2.23
HIPK3Q9H422 AC108081.1-201ENST00000604358 221 ntBASIC1.15□□□□□ -2.23
HIPK3Q9H422 AC008163.1-202ENST00000636004 2889 ntBASIC1.14□□□□□ -2.23
HIPK3Q9H422 IL6ST-203ENST00000381287 8667 ntTSL 5 BASIC1.14□□□□□ -2.23
HIPK3Q9H422 MIR377-201ENST00000362145 69 ntBASIC1.14□□□□□ -2.23
HIPK3Q9H422 Y_RNA.280-201ENST00000364765 112 ntBASIC1.14□□□□□ -2.23
HIPK3Q9H422 Y_RNA.366-201ENST00000365540 102 ntBASIC1.14□□□□□ -2.23
HIPK3Q9H422 AC002429.1-201ENST00000437672 148 ntBASIC1.14□□□□□ -2.23
HIPK3Q9H422 MIR4305-201ENST00000583252 102 ntBASIC1.14□□□□□ -2.23
HIPK3Q9H422 AC021443.1-201ENST00000604478 211 ntBASIC1.14□□□□□ -2.23
HIPK3Q9H422 SNORD114-21-201ENST00000606412 72 ntBASIC1.14□□□□□ -2.23
HIPK3Q9H422 RNU6-580P-201ENST00000365159 107 ntBASIC1.13□□□□□ -2.23
HIPK3Q9H422 SNORD12C-201ENST00000386307 89 ntBASIC1.13□□□□□ -2.23
HIPK3Q9H422 RNU6-205P-201ENST00000390858 107 ntBASIC1.13□□□□□ -2.23
HIPK3Q9H422 MRPL35P3-201ENST00000421557 364 ntBASIC1.13□□□□□ -2.23
HIPK3Q9H422 AC063976.4-201ENST00000421971 163 ntBASIC1.13□□□□□ -2.23
Retrieved 100 of 98,524 protein–RNA pairs in 171 ms