Protein–RNA interactions for Protein: Q9H239

MMP28, Matrix metalloproteinase-28, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP28Q9H239 SNORA7.1-201ENST00000363750 139 ntBASIC1.19□□□□□ -2.22
MMP28Q9H239 RNU6-1104P-201ENST00000384723 104 ntBASIC1.19□□□□□ -2.22
MMP28Q9H239 MT-TI-201ENST00000387365 69 ntBASIC1.19□□□□□ -2.22
MMP28Q9H239 AL365434.1-201ENST00000412362 380 ntTSL 3 BASIC1.19□□□□□ -2.22
MMP28Q9H239 AL512326.2-201ENST00000426359 151 ntBASIC1.19□□□□□ -2.22
MMP28Q9H239 RNU6-165P-201ENST00000517170 99 ntBASIC1.19□□□□□ -2.22
MMP28Q9H239 TRAJ36-201ENST00000614481 58 ntAPPRIS P1 BASIC1.19□□□□□ -2.22
MMP28Q9H239 HOTAIRM1_4.1-201ENST00000617934 102 ntBASIC1.19□□□□□ -2.22
MMP28Q9H239 MIR7111-201ENST00000619751 72 ntBASIC1.19□□□□□ -2.22
MMP28Q9H239 U6.95-201ENST00000636931 70 ntBASIC1.19□□□□□ -2.22
MMP28Q9H239 MIR6841-201ENST00000637129 72 ntBASIC1.19□□□□□ -2.22
MMP28Q9H239 ZNF209P-201ENST00000593450 2304 ntBASIC1.18□□□□□ -2.22
MMP28Q9H239 AL391516.1-201ENST00000554380 2449 ntBASIC1.18□□□□□ -2.22
MMP28Q9H239 SENP7-201ENST00000314261 4736 ntAPPRIS ALT2 TSL 1 (best) BASIC1.18□□□□□ -2.22
MMP28Q9H239 SNORA22.1-201ENST00000362701 134 ntBASIC1.18□□□□□ -2.22
MMP28Q9H239 RNA5SP48-201ENST00000363969 126 ntBASIC1.18□□□□□ -2.22
MMP28Q9H239 SNORA1.1-201ENST00000364671 133 ntBASIC1.18□□□□□ -2.22
MMP28Q9H239 Y_RNA.273-201ENST00000364703 102 ntBASIC1.18□□□□□ -2.22
MMP28Q9H239 Y_RNA.346-201ENST00000365385 112 ntBASIC1.18□□□□□ -2.22
MMP28Q9H239 RNU6-429P-201ENST00000384582 108 ntBASIC1.18□□□□□ -2.22
MMP28Q9H239 RNU6-476P-201ENST00000384726 107 ntBASIC1.18□□□□□ -2.22
MMP28Q9H239 MIR548A1-201ENST00000385041 97 ntBASIC1.18□□□□□ -2.22
MMP28Q9H239 RNA5SP136-201ENST00000410906 107 ntBASIC1.18□□□□□ -2.22
MMP28Q9H239 Y_RNA.629-201ENST00000411368 105 ntBASIC1.18□□□□□ -2.22
MMP28Q9H239 COX6CP6-201ENST00000490840 228 ntBASIC1.18□□□□□ -2.22
MMP28Q9H239 AL512310.8-201ENST00000550183 120 ntBASIC1.18□□□□□ -2.22
MMP28Q9H239 MIR3664-201ENST00000579074 99 ntBASIC1.18□□□□□ -2.22
MMP28Q9H239 AL157834.3-201ENST00000615543 103 ntBASIC1.18□□□□□ -2.22
MMP28Q9H239 MIR6129-201ENST00000616087 109 ntBASIC1.18□□□□□ -2.22
MMP28Q9H239 AL121890.5-201ENST00000620848 304 ntBASIC1.18□□□□□ -2.22
MMP28Q9H239 JMJD1C-212ENST00000639129 7901 ntAPPRIS ALT2 TSL 5 BASIC1.17□□□□□ -2.22
MMP28Q9H239 MIR26B-201ENST00000362251 77 ntBASIC1.17□□□□□ -2.22
MMP28Q9H239 RNU6-1065P-201ENST00000384513 106 ntBASIC1.17□□□□□ -2.22
MMP28Q9H239 SNORD20-201ENST00000384550 80 ntBASIC1.17□□□□□ -2.22
MMP28Q9H239 MIR548A3-201ENST00000385297 97 ntBASIC1.17□□□□□ -2.22
MMP28Q9H239 MIR1302-7-201ENST00000408841 72 ntBASIC1.17□□□□□ -2.22
MMP28Q9H239 RNU6-1064P-201ENST00000410626 104 ntBASIC1.17□□□□□ -2.22
MMP28Q9H239 AL022718.1-201ENST00000412004 84 ntBASIC1.17□□□□□ -2.22
MMP28Q9H239 RPL39P39-201ENST00000455840 151 ntBASIC1.17□□□□□ -2.22
MMP28Q9H239 Y_RNA.649-201ENST00000459077 103 ntBASIC1.17□□□□□ -2.22
MMP28Q9H239 AC004812.1-201ENST00000540773 146 ntBASIC1.17□□□□□ -2.22
MMP28Q9H239 MIR4421-201ENST00000578133 69 ntBASIC1.17□□□□□ -2.22
MMP28Q9H239 MIR3152-201ENST00000579801 74 ntBASIC1.17□□□□□ -2.22
MMP28Q9H239 AL670379.3-201ENST00000605040 251 ntBASIC1.17□□□□□ -2.22
MMP28Q9H239 Z97988.1-201ENST00000637697 135 ntBASIC1.17□□□□□ -2.22
MMP28Q9H239 SNORD33-201ENST00000362761 85 ntBASIC1.16□□□□□ -2.22
MMP28Q9H239 Y_RNA.118-201ENST00000363300 101 ntBASIC1.16□□□□□ -2.22
MMP28Q9H239 RNU6-1056P-201ENST00000383996 107 ntBASIC1.16□□□□□ -2.22
MMP28Q9H239 RNU6-1144P-201ENST00000384247 104 ntBASIC1.16□□□□□ -2.22
MMP28Q9H239 Y_RNA.470-201ENST00000384307 117 ntBASIC1.16□□□□□ -2.22
MMP28Q9H239 RNU6-602P-201ENST00000411155 105 ntBASIC1.16□□□□□ -2.22
MMP28Q9H239 RPS3AP1-201ENST00000413190 320 ntBASIC1.16□□□□□ -2.22
MMP28Q9H239 CYP3A52P-201ENST00000563326 91 ntBASIC1.16□□□□□ -2.22
MMP28Q9H239 LINC00643-201ENST00000334389 3247 ntTSL 2 BASIC1.15□□□□□ -2.23
MMP28Q9H239 Y_RNA.198-201ENST00000364013 98 ntBASIC1.15□□□□□ -2.23
MMP28Q9H239 RNU6-1325P-201ENST00000364905 105 ntBASIC1.15□□□□□ -2.23
MMP28Q9H239 Y_RNA.430-201ENST00000384081 110 ntBASIC1.15□□□□□ -2.23
MMP28Q9H239 Y_RNA.508-201ENST00000384502 114 ntBASIC1.15□□□□□ -2.23
MMP28Q9H239 Y_RNA.531-201ENST00000384589 121 ntBASIC1.15□□□□□ -2.23
MMP28Q9H239 TRAJ47-201ENST00000390490 57 ntAPPRIS P1 BASIC1.15□□□□□ -2.23
MMP28Q9H239 RNA5SP261-201ENST00000410536 106 ntBASIC1.15□□□□□ -2.23
MMP28Q9H239 RNU7-113P-201ENST00000459273 62 ntBASIC1.15□□□□□ -2.23
MMP28Q9H239 RPL30P7-201ENST00000479312 323 ntBASIC1.15□□□□□ -2.23
MMP28Q9H239 PRELID3BP2-201ENST00000605362 201 ntBASIC1.15□□□□□ -2.23
MMP28Q9H239 MIR8065-201ENST00000620577 100 ntBASIC1.15□□□□□ -2.23
MMP28Q9H239 UGP2-230ENST00000626380 276 ntTSL 5 BASIC1.15□□□□□ -2.23
MMP28Q9H239 RNU6-834P-201ENST00000362367 110 ntBASIC1.14□□□□□ -2.23
MMP28Q9H239 Y_RNA.213-201ENST00000364178 111 ntBASIC1.14□□□□□ -2.23
MMP28Q9H239 RNU6-392P-201ENST00000364926 101 ntBASIC1.14□□□□□ -2.23
MMP28Q9H239 RNU6-215P-201ENST00000365169 102 ntBASIC1.14□□□□□ -2.23
MMP28Q9H239 AL031386.1-201ENST00000411940 142 ntTSL 5 BASIC1.14□□□□□ -2.23
MMP28Q9H239 AP003716.2-201ENST00000528260 108 ntBASIC1.14□□□□□ -2.23
MMP28Q9H239 ZFAT-AS1_2.1-201ENST00000613742 201 ntBASIC1.14□□□□□ -2.23
MMP28Q9H239 GNPDA2-204ENST00000509756 5382 ntAPPRIS ALT1 TSL 1 (best) BASIC1.13□□□□□ -2.23
MMP28Q9H239 Y_RNA.35-201ENST00000362601 101 ntBASIC1.13□□□□□ -2.23
MMP28Q9H239 Y_RNA.224-201ENST00000364308 111 ntBASIC1.13□□□□□ -2.23
MMP28Q9H239 Y_RNA.355-201ENST00000365462 98 ntBASIC1.13□□□□□ -2.23
MMP28Q9H239 SNORD116-21-201ENST00000384507 92 ntBASIC1.13□□□□□ -2.23
MMP28Q9H239 SNORD12C-201ENST00000386307 89 ntBASIC1.13□□□□□ -2.23
MMP28Q9H239 MIR1185-1-201ENST00000408598 86 ntBASIC1.13□□□□□ -2.23
MMP28Q9H239 AC245047.7-201ENST00000440265 293 ntBASIC1.13□□□□□ -2.23
MMP28Q9H239 AC048334.1-201ENST00000477975 159 ntBASIC1.13□□□□□ -2.23
MMP28Q9H239 RPS23P4-201ENST00000487908 423 ntBASIC1.13□□□□□ -2.23
MMP28Q9H239 AL133373.1-201ENST00000497098 94 ntBASIC1.13□□□□□ -2.23
MMP28Q9H239 AC113410.1-201ENST00000505029 247 ntBASIC1.13□□□□□ -2.23
MMP28Q9H239 RNA5SP33-201ENST00000516687 98 ntBASIC1.13□□□□□ -2.23
MMP28Q9H239 RN7SKP88-201ENST00000516847 250 ntBASIC1.13□□□□□ -2.23
MMP28Q9H239 MIR548AE2-201ENST00000583456 67 ntBASIC1.13□□□□□ -2.23
MMP28Q9H239 7SK.8-201ENST00000612110 250 ntBASIC1.13□□□□□ -2.23
MMP28Q9H239 7SK.11-201ENST00000615477 250 ntBASIC1.13□□□□□ -2.23
MMP28Q9H239 7SK.13-201ENST00000622040 250 ntBASIC1.13□□□□□ -2.23
MMP28Q9H239 LMBR1-222ENST00000638959 93 ntTSL 5 BASIC1.13□□□□□ -2.23
MMP28Q9H239 MIR103A2-201ENST00000362154 78 ntBASIC1.12□□□□□ -2.23
MMP28Q9H239 RNA5SP264-201ENST00000363115 107 ntBASIC1.12□□□□□ -2.23
MMP28Q9H239 SNORA25.8-201ENST00000364831 128 ntBASIC1.12□□□□□ -2.23
MMP28Q9H239 SNORA32-201ENST00000384072 121 ntBASIC1.12□□□□□ -2.23
MMP28Q9H239 RNU6-342P-201ENST00000384521 104 ntBASIC1.12□□□□□ -2.23
MMP28Q9H239 RNU6-939P-201ENST00000384634 107 ntBASIC1.12□□□□□ -2.23
MMP28Q9H239 Y_RNA.549-201ENST00000384657 102 ntBASIC1.12□□□□□ -2.23
MMP28Q9H239 SNORD38B-201ENST00000384690 67 ntBASIC1.12□□□□□ -2.23
Retrieved 100 of 98,524 protein–RNA pairs in 105.7 ms