Protein–RNA interactions for Protein: Q9H1J1

UPF3A, Regulator of nonsense transcripts 3A, humanhuman

Known RBP Predictions only

Length 476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3AQ9H1J1 RNU6-349P-201ENST00000362402 107 ntBASIC0.96□□□□□ -2.26
UPF3AQ9H1J1 RNU6-309P-201ENST00000364573 106 ntBASIC0.96□□□□□ -2.26
UPF3AQ9H1J1 RNU6-1062P-201ENST00000383908 107 ntBASIC0.96□□□□□ -2.26
UPF3AQ9H1J1 RNA5SP95-201ENST00000410319 137 ntBASIC0.96□□□□□ -2.26
UPF3AQ9H1J1 RNU7-21P-201ENST00000459430 62 ntBASIC0.96□□□□□ -2.26
UPF3AQ9H1J1 MIR4714-201ENST00000580728 77 ntBASIC0.96□□□□□ -2.26
UPF3AQ9H1J1 RN7SL793P-201ENST00000583259 296 ntBASIC0.96□□□□□ -2.26
UPF3AQ9H1J1 AC027335.2-201ENST00000624030 375 ntBASIC0.96□□□□□ -2.26
UPF3AQ9H1J1 Z97988.1-201ENST00000637697 135 ntBASIC0.96□□□□□ -2.26
UPF3AQ9H1J1 RNU6-774P-201ENST00000363238 107 ntBASIC0.95□□□□□ -2.26
UPF3AQ9H1J1 RNY1P5-201ENST00000383890 115 ntBASIC0.95□□□□□ -2.26
UPF3AQ9H1J1 SNORA20-201ENST00000384662 132 ntBASIC0.95□□□□□ -2.26
UPF3AQ9H1J1 RNU6-1067P-201ENST00000384752 107 ntBASIC0.95□□□□□ -2.26
UPF3AQ9H1J1 Y_RNA.584-201ENST00000391090 114 ntBASIC0.95□□□□□ -2.26
UPF3AQ9H1J1 RNU6-426P-201ENST00000516464 97 ntBASIC0.95□□□□□ -2.26
UPF3AQ9H1J1 RNU7-53P-201ENST00000516705 60 ntBASIC0.95□□□□□ -2.26
UPF3AQ9H1J1 AC090155.2-201ENST00000518854 267 ntTSL 3 BASIC0.95□□□□□ -2.26
UPF3AQ9H1J1 MIR548X2-201ENST00000579776 100 ntBASIC0.95□□□□□ -2.26
UPF3AQ9H1J1 MIR6717-201ENST00000622747 73 ntBASIC0.95□□□□□ -2.26
UPF3AQ9H1J1 LEKR1-212ENST00000640869 237 ntTSL 5 BASIC0.95□□□□□ -2.26
UPF3AQ9H1J1 AP003174.1-201ENST00000306533 376 ntTSL 2 BASIC0.94□□□□□ -2.26
UPF3AQ9H1J1 Y_RNA.205-201ENST00000364128 113 ntBASIC0.94□□□□□ -2.26
UPF3AQ9H1J1 SNORA25-201ENST00000384384 134 ntBASIC0.94□□□□□ -2.26
UPF3AQ9H1J1 RNU6-602P-201ENST00000411155 105 ntBASIC0.94□□□□□ -2.26
UPF3AQ9H1J1 RNU7-80P-201ENST00000459562 61 ntBASIC0.94□□□□□ -2.26
UPF3AQ9H1J1 SEPT14P17-201ENST00000617978 177 ntBASIC0.94□□□□□ -2.26
UPF3AQ9H1J1 AC012676.2-201ENST00000619258 186 ntBASIC0.94□□□□□ -2.26
UPF3AQ9H1J1 MIR6841-201ENST00000637129 72 ntBASIC0.94□□□□□ -2.26
UPF3AQ9H1J1 AC108866.1-201ENST00000503073 2339 ntTSL 5 BASIC0.93□□□□□ -2.26
UPF3AQ9H1J1 Y_RNA.120-201ENST00000363304 110 ntBASIC0.93□□□□□ -2.26
UPF3AQ9H1J1 RNU4-16P-201ENST00000364737 141 ntBASIC0.93□□□□□ -2.26
UPF3AQ9H1J1 Y_RNA.420-201ENST00000384043 110 ntBASIC0.93□□□□□ -2.26
UPF3AQ9H1J1 AC002429.1-201ENST00000437672 148 ntBASIC0.93□□□□□ -2.26
UPF3AQ9H1J1 UBL5P1-201ENST00000507979 193 ntBASIC0.93□□□□□ -2.26
UPF3AQ9H1J1 RNU6-1258P-201ENST00000516911 111 ntBASIC0.93□□□□□ -2.26
UPF3AQ9H1J1 RNA5SP404-201ENST00000517118 132 ntBASIC0.93□□□□□ -2.26
UPF3AQ9H1J1 SNORA70.22-201ENST00000517160 124 ntBASIC0.93□□□□□ -2.26
UPF3AQ9H1J1 AC024382.1-201ENST00000520224 292 ntTSL 3 BASIC0.93□□□□□ -2.26
UPF3AQ9H1J1 MIR3133-201ENST00000583157 78 ntBASIC0.93□□□□□ -2.26
UPF3AQ9H1J1 AC108081.1-201ENST00000604358 221 ntBASIC0.93□□□□□ -2.26
UPF3AQ9H1J1 uc_338.6-201ENST00000613544 171 ntBASIC0.93□□□□□ -2.26
UPF3AQ9H1J1 AC021613.1-201ENST00000623880 111 ntBASIC0.93□□□□□ -2.26
UPF3AQ9H1J1 RNU6-187P-201ENST00000384139 106 ntBASIC0.92□□□□□ -2.26
UPF3AQ9H1J1 TRAJ3-201ENST00000390534 62 ntAPPRIS P1 BASIC0.92□□□□□ -2.26
UPF3AQ9H1J1 RNU6-1319P-201ENST00000390855 104 ntBASIC0.92□□□□□ -2.26
UPF3AQ9H1J1 RNU6-747P-201ENST00000390928 104 ntBASIC0.92□□□□□ -2.26
UPF3AQ9H1J1 RNU6-241P-201ENST00000391148 104 ntBASIC0.92□□□□□ -2.26
UPF3AQ9H1J1 AL603914.1-201ENST00000401964 204 ntBASIC0.92□□□□□ -2.26
UPF3AQ9H1J1 RNU6-613P-201ENST00000410412 108 ntBASIC0.92□□□□□ -2.26
UPF3AQ9H1J1 RNU6-177P-201ENST00000411257 104 ntBASIC0.92□□□□□ -2.26
UPF3AQ9H1J1 RNU11-2P-201ENST00000516898 142 ntBASIC0.92□□□□□ -2.26
UPF3AQ9H1J1 AC036111.3-201ENST00000526389 112 ntBASIC0.92□□□□□ -2.26
UPF3AQ9H1J1 AC008163.1-202ENST00000636004 2889 ntBASIC0.91□□□□□ -2.26
UPF3AQ9H1J1 MIR302B-201ENST00000362188 73 ntBASIC0.91□□□□□ -2.26
UPF3AQ9H1J1 Y_RNA.280-201ENST00000364765 112 ntBASIC0.91□□□□□ -2.26
UPF3AQ9H1J1 Y_RNA.294-201ENST00000364916 102 ntBASIC0.91□□□□□ -2.26
UPF3AQ9H1J1 RNU6-915P-201ENST00000364943 103 ntBASIC0.91□□□□□ -2.26
UPF3AQ9H1J1 RNY1P6-201ENST00000384193 109 ntBASIC0.91□□□□□ -2.26
UPF3AQ9H1J1 Y_RNA.454-201ENST00000384224 113 ntBASIC0.91□□□□□ -2.26
UPF3AQ9H1J1 Y_RNA.488-201ENST00000384403 102 ntBASIC0.91□□□□□ -2.26
UPF3AQ9H1J1 SNORA80D-201ENST00000384488 135 ntBASIC0.91□□□□□ -2.26
UPF3AQ9H1J1 RNU6-205P-201ENST00000390858 107 ntBASIC0.91□□□□□ -2.26
UPF3AQ9H1J1 POLR2J4-204ENST00000418424 324 ntBASIC0.91□□□□□ -2.26
UPF3AQ9H1J1 Y_RNA.690-201ENST00000516603 95 ntBASIC0.91□□□□□ -2.26
UPF3AQ9H1J1 MIR6740-201ENST00000618268 113 ntBASIC0.91□□□□□ -2.26
UPF3AQ9H1J1 AP001340.1-201ENST00000624405 217 ntBASIC0.91□□□□□ -2.26
UPF3AQ9H1J1 SNORA1.1-201ENST00000364671 133 ntBASIC0.9□□□□□ -2.27
UPF3AQ9H1J1 RNU6-580P-201ENST00000365159 107 ntBASIC0.9□□□□□ -2.27
UPF3AQ9H1J1 Y_RNA.330-201ENST00000365230 109 ntBASIC0.9□□□□□ -2.27
UPF3AQ9H1J1 RNU6-396P-201ENST00000365369 105 ntBASIC0.9□□□□□ -2.27
UPF3AQ9H1J1 Y_RNA.430-201ENST00000384081 110 ntBASIC0.9□□□□□ -2.27
UPF3AQ9H1J1 Y_RNA.568-201ENST00000384742 113 ntBASIC0.9□□□□□ -2.27
UPF3AQ9H1J1 MIR216A-201ENST00000385063 110 ntBASIC0.9□□□□□ -2.27
UPF3AQ9H1J1 SNORD12C-201ENST00000386307 89 ntBASIC0.9□□□□□ -2.27
UPF3AQ9H1J1 MIR513C-201ENST00000401352 84 ntBASIC0.9□□□□□ -2.27
UPF3AQ9H1J1 MTND4LP9-201ENST00000427694 174 ntBASIC0.9□□□□□ -2.27
UPF3AQ9H1J1 AL353614.1-201ENST00000445631 206 ntTSL 5 BASIC0.9□□□□□ -2.27
UPF3AQ9H1J1 snoU13.21-201ENST00000459368 105 ntBASIC0.9□□□□□ -2.27
UPF3AQ9H1J1 RNU6-240P-201ENST00000516098 97 ntBASIC0.9□□□□□ -2.27
UPF3AQ9H1J1 MIR2115-201ENST00000516657 100 ntBASIC0.9□□□□□ -2.27
UPF3AQ9H1J1 IGKV1-22-201ENST00000524313 326 ntBASIC0.9□□□□□ -2.27
UPF3AQ9H1J1 AC023827.1-201ENST00000569247 97 ntBASIC0.9□□□□□ -2.27
UPF3AQ9H1J1 MIR3121-201ENST00000579680 77 ntBASIC0.9□□□□□ -2.27
UPF3AQ9H1J1 AC079466.2-201ENST00000585394 185 ntTSL 5 BASIC0.9□□□□□ -2.27
UPF3AQ9H1J1 DLEU2_5.2-201ENST00000610606 84 ntBASIC0.9□□□□□ -2.27
UPF3AQ9H1J1 Y_RNA.171-201ENST00000363760 102 ntBASIC0.89□□□□□ -2.27
UPF3AQ9H1J1 RNU6-746P-201ENST00000384112 109 ntBASIC0.89□□□□□ -2.27
UPF3AQ9H1J1 MIR19B1-201ENST00000384829 87 ntBASIC0.89□□□□□ -2.27
UPF3AQ9H1J1 MT-TN-201ENST00000387400 73 ntBASIC0.89□□□□□ -2.27
UPF3AQ9H1J1 SNORD12-201ENST00000391002 90 ntBASIC0.89□□□□□ -2.27
UPF3AQ9H1J1 RNU6-257P-201ENST00000410238 98 ntBASIC0.89□□□□□ -2.27
UPF3AQ9H1J1 RNA5SP144-201ENST00000410846 116 ntBASIC0.89□□□□□ -2.27
UPF3AQ9H1J1 AC063976.4-201ENST00000421971 163 ntBASIC0.89□□□□□ -2.27
UPF3AQ9H1J1 SUMO1P3-201ENST00000439961 304 ntBASIC0.89□□□□□ -2.27
UPF3AQ9H1J1 DIP2A-IT1-201ENST00000442434 428 ntTSL 2 BASIC0.89□□□□□ -2.27
UPF3AQ9H1J1 RNU2-35P-201ENST00000516446 142 ntBASIC0.89□□□□□ -2.27
UPF3AQ9H1J1 AC004148.1-201ENST00000571506 398 ntTSL 5 BASIC0.89□□□□□ -2.27
UPF3AQ9H1J1 Y_RNA.757-201ENST00000578934 114 ntBASIC0.89□□□□□ -2.27
UPF3AQ9H1J1 AC010332.2-201ENST00000613083 1904 ntBASIC0.88□□□□□ -2.27
UPF3AQ9H1J1 MIR377-201ENST00000362145 69 ntBASIC0.88□□□□□ -2.27
Retrieved 100 of 98,524 protein–RNA pairs in 193.2 ms