Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 SNORA31.2-201ENST00000516019 134 ntBASIC1.71□□□□□ -2.14
CCDC140Q96MF4 RNU11-2P-201ENST00000516898 142 ntBASIC1.71□□□□□ -2.14
CCDC140Q96MF4 AC141846.1-201ENST00000568348 142 ntBASIC1.71□□□□□ -2.14
CCDC140Q96MF4 MIR4264-201ENST00000583520 66 ntBASIC1.71□□□□□ -2.14
CCDC140Q96MF4 AL512310.12-203ENST00000640543 90 ntBASIC1.71□□□□□ -2.14
CCDC140Q96MF4 AC008163.1-205ENST00000413944 4649 ntTSL 1 (best) BASIC1.71□□□□□ -2.14
CCDC140Q96MF4 PTPRQ-208ENST00000614701 8289 ntAPPRIS P1 TSL 5 BASIC1.7□□□□□ -2.14
CCDC140Q96MF4 SCN7A-201ENST00000409855 7183 ntAPPRIS P1 TSL 1 (best) BASIC1.7□□□□□ -2.14
CCDC140Q96MF4 MIRLET7G-201ENST00000362280 84 ntBASIC1.7□□□□□ -2.14
CCDC140Q96MF4 RNU6ATAC42P-201ENST00000408637 95 ntBASIC1.7□□□□□ -2.14
CCDC140Q96MF4 SNORA19.1-201ENST00000410656 129 ntBASIC1.7□□□□□ -2.14
CCDC140Q96MF4 RNU7-62P-201ENST00000458856 62 ntBASIC1.7□□□□□ -2.14
CCDC140Q96MF4 AC108752.1-201ENST00000484679 576 ntTSL 5 BASIC1.7□□□□□ -2.14
CCDC140Q96MF4 MIR6740-201ENST00000618268 113 ntBASIC1.7□□□□□ -2.14
CCDC140Q96MF4 MIR6132-201ENST00000622083 109 ntBASIC1.7□□□□□ -2.14
CCDC140Q96MF4 HS1BP3-208ENST00000631166 78 ntTSL 5 BASIC1.7□□□□□ -2.14
CCDC140Q96MF4 XIRP2-201ENST00000295237 5246 ntTSL 2 BASIC1.7□□□□□ -2.14
CCDC140Q96MF4 HAS2-201ENST00000303924 4190 ntAPPRIS P1 TSL 1 (best) BASIC1.69□□□□□ -2.14
CCDC140Q96MF4 RNY1P13-201ENST00000365030 105 ntBASIC1.69□□□□□ -2.14
CCDC140Q96MF4 SNORD115-35-201ENST00000365122 82 ntBASIC1.69□□□□□ -2.14
CCDC140Q96MF4 MIR206-201ENST00000384872 86 ntBASIC1.69□□□□□ -2.14
CCDC140Q96MF4 RNU6ATAC37P-201ENST00000408328 131 ntBASIC1.69□□□□□ -2.14
CCDC140Q96MF4 RNU6-1054P-201ENST00000411293 104 ntBASIC1.69□□□□□ -2.14
CCDC140Q96MF4 snoU13.26-201ENST00000459452 105 ntBASIC1.69□□□□□ -2.14
CCDC140Q96MF4 RNU7-2P-201ENST00000516096 62 ntBASIC1.69□□□□□ -2.14
CCDC140Q96MF4 RNA5SP200-201ENST00000516360 103 ntBASIC1.69□□□□□ -2.14
CCDC140Q96MF4 AL662814.1-201ENST00000617364 121 ntBASIC1.69□□□□□ -2.14
CCDC140Q96MF4 SCN7A-206ENST00000619410 7186 ntAPPRIS P1 TSL 5 BASIC1.68□□□□□ -2.14
CCDC140Q96MF4 SCN7A-207ENST00000621965 7186 ntAPPRIS P1 TSL 5 BASIC1.68□□□□□ -2.14
CCDC140Q96MF4 RNU6-1113P-201ENST00000384348 107 ntBASIC1.68□□□□□ -2.14
CCDC140Q96MF4 Y_RNA.495-201ENST00000384435 112 ntBASIC1.68□□□□□ -2.14
CCDC140Q96MF4 SNORA2B-201ENST00000384583 137 ntBASIC1.68□□□□□ -2.14
CCDC140Q96MF4 RNU6-679P-201ENST00000391003 106 ntBASIC1.68□□□□□ -2.14
CCDC140Q96MF4 AC035139.1-201ENST00000423256 273 ntTSL 3 BASIC1.68□□□□□ -2.14
CCDC140Q96MF4 AL162400.2-201ENST00000427547 157 ntTSL 3 BASIC1.68□□□□□ -2.14
CCDC140Q96MF4 AC104435.1-201ENST00000483483 166 ntBASIC1.68□□□□□ -2.14
CCDC140Q96MF4 RNU6-168P-201ENST00000516189 101 ntBASIC1.68□□□□□ -2.14
CCDC140Q96MF4 MIR4285-201ENST00000581001 85 ntBASIC1.68□□□□□ -2.14
CCDC140Q96MF4 AC068733.3-201ENST00000632757 269 ntTSL 3 BASIC1.68□□□□□ -2.14
CCDC140Q96MF4 PRKD3-201ENST00000234179 5900 ntAPPRIS P1 TSL 1 (best) BASIC1.68□□□□□ -2.14
CCDC140Q96MF4 DYNC2H1-203ENST00000398093 12945 ntAPPRIS P3 TSL 5 BASIC1.68□□□□□ -2.14
CCDC140Q96MF4 SAGE1-201ENST00000324447 2952 ntAPPRIS P2 TSL 5 BASIC1.67□□□□□ -2.14
CCDC140Q96MF4 Y_RNA.360-201ENST00000365512 102 ntBASIC1.67□□□□□ -2.14
CCDC140Q96MF4 Y_RNA.448-201ENST00000384185 108 ntBASIC1.67□□□□□ -2.14
CCDC140Q96MF4 MIR504-201ENST00000385065 83 ntBASIC1.67□□□□□ -2.14
CCDC140Q96MF4 SNORA48.3-201ENST00000391081 134 ntBASIC1.67□□□□□ -2.14
CCDC140Q96MF4 RNU6-1165P-201ENST00000410119 107 ntBASIC1.67□□□□□ -2.14
CCDC140Q96MF4 AL356320.1-201ENST00000429616 163 ntBASIC1.67□□□□□ -2.14
CCDC140Q96MF4 DEFB131E-201ENST00000532329 154 ntBASIC1.67□□□□□ -2.14
CCDC140Q96MF4 PNRC2-204ENST00000579103 171 ntTSL 2 BASIC1.67□□□□□ -2.14
CCDC140Q96MF4 SEPT14P17-201ENST00000617978 177 ntBASIC1.67□□□□□ -2.14
CCDC140Q96MF4 MIR7843-201ENST00000622274 79 ntBASIC1.67□□□□□ -2.14
CCDC140Q96MF4 UBE3A-225ENST00000636667 5726 ntTSL 5 BASIC1.67□□□□□ -2.14
CCDC140Q96MF4 SI-201ENST00000264382 6011 ntAPPRIS P1 TSL 1 (best) BASIC1.66□□□□□ -2.14
CCDC140Q96MF4 USP53-202ENST00000450251 6072 ntAPPRIS P1 TSL 5 BASIC1.66□□□□□ -2.14
CCDC140Q96MF4 RNU6-766P-201ENST00000362478 107 ntBASIC1.66□□□□□ -2.14
CCDC140Q96MF4 RNA5SP432-201ENST00000362480 116 ntBASIC1.66□□□□□ -2.14
CCDC140Q96MF4 Y_RNA.328-201ENST00000365208 113 ntBASIC1.66□□□□□ -2.14
CCDC140Q96MF4 RNU6-32P-201ENST00000383948 107 ntBASIC1.66□□□□□ -2.14
CCDC140Q96MF4 RNU6-13P-201ENST00000384248 107 ntBASIC1.66□□□□□ -2.14
CCDC140Q96MF4 RNU6-12P-201ENST00000384604 107 ntBASIC1.66□□□□□ -2.14
CCDC140Q96MF4 RNU6-41P-201ENST00000384741 107 ntBASIC1.66□□□□□ -2.14
CCDC140Q96MF4 MIR590-201ENST00000385008 97 ntBASIC1.66□□□□□ -2.14
CCDC140Q96MF4 MT-TN-201ENST00000387400 73 ntBASIC1.66□□□□□ -2.14
CCDC140Q96MF4 RNA5SP89-201ENST00000410300 108 ntBASIC1.66□□□□□ -2.14
CCDC140Q96MF4 RNU6-613P-201ENST00000410412 108 ntBASIC1.66□□□□□ -2.14
CCDC140Q96MF4 ATP6V0E1P1-201ENST00000412537 226 ntBASIC1.66□□□□□ -2.14
CCDC140Q96MF4 snoU13.15-201ENST00000459407 104 ntBASIC1.66□□□□□ -2.14
CCDC140Q96MF4 RNU6-109P-201ENST00000516364 107 ntBASIC1.66□□□□□ -2.14
CCDC140Q96MF4 RNU6-184P-201ENST00000516514 107 ntBASIC1.66□□□□□ -2.14
CCDC140Q96MF4 RNU7-137P-201ENST00000516788 62 ntBASIC1.66□□□□□ -2.14
CCDC140Q96MF4 MIR4648-201ENST00000580107 72 ntBASIC1.66□□□□□ -2.14
CCDC140Q96MF4 uc_338.6-201ENST00000613544 171 ntBASIC1.66□□□□□ -2.14
CCDC140Q96MF4 MIR6873-201ENST00000622788 63 ntBASIC1.66□□□□□ -2.14
CCDC140Q96MF4 OR2L2-202ENST00000641771 4300 ntAPPRIS P1 BASIC1.65□□□□□ -2.14
CCDC140Q96MF4 SNORD114-10-201ENST00000363409 72 ntBASIC1.65□□□□□ -2.15
CCDC140Q96MF4 RNU6-1099P-201ENST00000363533 107 ntBASIC1.65□□□□□ -2.15
CCDC140Q96MF4 RNA5SP37-201ENST00000365420 130 ntBASIC1.65□□□□□ -2.15
CCDC140Q96MF4 Y_RNA.363-201ENST00000365529 113 ntBASIC1.65□□□□□ -2.15
CCDC140Q96MF4 RNU6-910P-201ENST00000390844 107 ntBASIC1.65□□□□□ -2.15
CCDC140Q96MF4 RNU6-1321P-201ENST00000390905 107 ntBASIC1.65□□□□□ -2.15
CCDC140Q96MF4 RNU6-1307P-201ENST00000391012 103 ntBASIC1.65□□□□□ -2.15
CCDC140Q96MF4 SNORA75.2-201ENST00000391138 150 ntBASIC1.65□□□□□ -2.15
CCDC140Q96MF4 SNORA75.3-201ENST00000391231 150 ntBASIC1.65□□□□□ -2.15
CCDC140Q96MF4 AL353813.1-201ENST00000440700 253 ntBASIC1.65□□□□□ -2.15
CCDC140Q96MF4 KIAA1551-201ENST00000312561 6230 ntAPPRIS P1 TSL 1 (best) BASIC1.64□□□□□ -2.15
CCDC140Q96MF4 KTN1-205ENST00000395314 4618 ntAPPRIS P4 TSL 1 (best) BASIC1.64□□□□□ -2.15
CCDC140Q96MF4 RNU4-36P-201ENST00000364294 144 ntBASIC1.64□□□□□ -2.15
CCDC140Q96MF4 RNU6-865P-201ENST00000364772 107 ntBASIC1.64□□□□□ -2.15
CCDC140Q96MF4 MIR577-201ENST00000385196 96 ntBASIC1.64□□□□□ -2.15
CCDC140Q96MF4 RNU6ATAC2P-201ENST00000387943 126 ntBASIC1.64□□□□□ -2.15
CCDC140Q96MF4 RN7SKP223-201ENST00000410582 62 ntBASIC1.64□□□□□ -2.15
CCDC140Q96MF4 AC023827.1-201ENST00000569247 97 ntBASIC1.64□□□□□ -2.15
CCDC140Q96MF4 MIR1273D-201ENST00000577266 86 ntBASIC1.64□□□□□ -2.15
CCDC140Q96MF4 MIR5002-201ENST00000584713 97 ntBASIC1.64□□□□□ -2.15
CCDC140Q96MF4 ZNF654-201ENST00000309495 4957 ntAPPRIS P2 TSL 1 (best) BASIC1.64□□□□□ -2.15
CCDC140Q96MF4 CEP290-201ENST00000309041 7616 ntAPPRIS ALT1 TSL 5 BASIC1.63□□□□□ -2.15
CCDC140Q96MF4 MIR30D-201ENST00000362283 70 ntBASIC1.63□□□□□ -2.15
CCDC140Q96MF4 RNY3P2-201ENST00000362918 102 ntBASIC1.63□□□□□ -2.15
CCDC140Q96MF4 RNU6-949P-201ENST00000384040 107 ntBASIC1.63□□□□□ -2.15
Retrieved 100 of 98,524 protein–RNA pairs in 130.1 ms