Protein–RNA interactions for Protein: Q96JC1

VPS39, Vam6/Vps39-like protein, humanhuman

Predictions only

Length 886 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39Q96JC1 AC002350.1-201ENST00000490759 375 ntBASIC0.38□□□□□ -2.35
VPS39Q96JC1 SNORD92-201ENST00000585078 85 ntBASIC0.38□□□□□ -2.35
VPS39Q96JC1 AL365205.2-201ENST00000594586 68 ntBASIC0.38□□□□□ -2.35
VPS39Q96JC1 U6.90-201ENST00000614007 104 ntBASIC0.38□□□□□ -2.35
VPS39Q96JC1 U6.70-201ENST00000620287 104 ntBASIC0.38□□□□□ -2.35
VPS39Q96JC1 MTND5P32-201ENST00000560711 1802 ntBASIC0.37□□□□□ -2.35
VPS39Q96JC1 RNA5SP517-201ENST00000364724 117 ntBASIC0.37□□□□□ -2.35
VPS39Q96JC1 RNU4-16P-201ENST00000364737 141 ntBASIC0.37□□□□□ -2.35
VPS39Q96JC1 Y_RNA.288-201ENST00000364854 92 ntBASIC0.37□□□□□ -2.35
VPS39Q96JC1 RNU6-1011P-201ENST00000384668 107 ntBASIC0.37□□□□□ -2.35
VPS39Q96JC1 SNORA79-201ENST00000408376 140 ntBASIC0.37□□□□□ -2.35
VPS39Q96JC1 SNORD100-201ENST00000408573 76 ntBASIC0.37□□□□□ -2.35
VPS39Q96JC1 SNORD93-201ENST00000408813 74 ntBASIC0.37□□□□□ -2.35
VPS39Q96JC1 RNA5SP436-201ENST00000516020 115 ntBASIC0.37□□□□□ -2.35
VPS39Q96JC1 SCARNA15-202ENST00000516881 127 ntBASIC0.37□□□□□ -2.35
VPS39Q96JC1 RNU6-1258P-201ENST00000516911 111 ntBASIC0.37□□□□□ -2.35
VPS39Q96JC1 MIR4711-201ENST00000578274 70 ntBASIC0.37□□□□□ -2.35
VPS39Q96JC1 MIR378D2-201ENST00000580636 98 ntBASIC0.37□□□□□ -2.35
VPS39Q96JC1 RNU6-103P-201ENST00000363686 107 ntBASIC0.36□□□□□ -2.35
VPS39Q96JC1 RNU6-1292P-201ENST00000383856 107 ntBASIC0.36□□□□□ -2.35
VPS39Q96JC1 MIR489-201ENST00000384923 84 ntBASIC0.36□□□□□ -2.35
VPS39Q96JC1 U8.15-201ENST00000390947 134 ntBASIC0.36□□□□□ -2.35
VPS39Q96JC1 Y_RNA.626-201ENST00000411288 95 ntBASIC0.36□□□□□ -2.35
VPS39Q96JC1 MTCYBP9-201ENST00000431021 303 ntBASIC0.36□□□□□ -2.35
VPS39Q96JC1 RNU7-80P-201ENST00000459562 61 ntBASIC0.36□□□□□ -2.35
VPS39Q96JC1 Y_RNA.797-201ENST00000515977 94 ntBASIC0.36□□□□□ -2.35
VPS39Q96JC1 RNU6-327P-201ENST00000516270 127 ntBASIC0.36□□□□□ -2.35
VPS39Q96JC1 SCARNA15.1-201ENST00000516384 125 ntBASIC0.36□□□□□ -2.35
VPS39Q96JC1 AC007991.2-201ENST00000520185 102 ntTSL 5 BASIC0.36□□□□□ -2.35
VPS39Q96JC1 MIR3128-201ENST00000581957 66 ntBASIC0.36□□□□□ -2.35
VPS39Q96JC1 AC243829.6-201ENST00000612652 106 ntBASIC0.36□□□□□ -2.35
VPS39Q96JC1 FAM19A1-204ENST00000617084 159 ntTSL 5 BASIC0.36□□□□□ -2.35
VPS39Q96JC1 MIR8066-201ENST00000617280 78 ntBASIC0.36□□□□□ -2.35
VPS39Q96JC1 AL662814.1-201ENST00000617364 121 ntBASIC0.36□□□□□ -2.35
VPS39Q96JC1 CALCRL-202ENST00000409998 5223 ntAPPRIS P1 TSL 5 BASIC0.35□□□□□ -2.35
VPS39Q96JC1 MT-TF-201ENST00000387314 71 ntBASIC0.35□□□□□ -2.35
VPS39Q96JC1 RNU4-83P-201ENST00000410863 133 ntBASIC0.35□□□□□ -2.35
VPS39Q96JC1 AC096949.1-201ENST00000412047 152 ntBASIC0.35□□□□□ -2.35
VPS39Q96JC1 RNA5SP134-201ENST00000516492 96 ntBASIC0.35□□□□□ -2.35
VPS39Q96JC1 SNORD116-25-201ENST00000516517 92 ntBASIC0.35□□□□□ -2.35
VPS39Q96JC1 RNU6-1149P-201ENST00000516810 97 ntBASIC0.35□□□□□ -2.35
VPS39Q96JC1 DLEU2_5.2-201ENST00000610606 84 ntBASIC0.35□□□□□ -2.35
VPS39Q96JC1 AC021613.1-201ENST00000623880 111 ntBASIC0.35□□□□□ -2.35
VPS39Q96JC1 AL589743.1-201ENST00000551932 2712 ntBASIC0.34□□□□□ -2.35
VPS39Q96JC1 AC090625.1-201ENST00000357130 210 ntBASIC0.34□□□□□ -2.36
VPS39Q96JC1 MIR103A1-201ENST00000362165 78 ntBASIC0.34□□□□□ -2.36
VPS39Q96JC1 RNU6-403P-201ENST00000363163 104 ntBASIC0.34□□□□□ -2.36
VPS39Q96JC1 Y_RNA.182-201ENST00000363880 111 ntBASIC0.34□□□□□ -2.36
VPS39Q96JC1 RNU6-342P-201ENST00000384521 104 ntBASIC0.34□□□□□ -2.36
VPS39Q96JC1 MIR644A-201ENST00000385262 94 ntBASIC0.34□□□□□ -2.36
VPS39Q96JC1 RNA5SP237-201ENST00000410414 113 ntBASIC0.34□□□□□ -2.36
VPS39Q96JC1 Y_RNA.668-201ENST00000516233 93 ntBASIC0.34□□□□□ -2.36
VPS39Q96JC1 RNA5SP94-201ENST00000516917 108 ntBASIC0.34□□□□□ -2.36
VPS39Q96JC1 AC141846.1-201ENST00000568348 142 ntBASIC0.34□□□□□ -2.36
VPS39Q96JC1 MIR3678-201ENST00000578455 94 ntBASIC0.34□□□□□ -2.36
VPS39Q96JC1 AC092634.7-201ENST00000621022 103 ntBASIC0.34□□□□□ -2.36
VPS39Q96JC1 MIR6841-201ENST00000637129 72 ntBASIC0.34□□□□□ -2.36
VPS39Q96JC1 MIRLET7D-201ENST00000362263 87 ntBASIC0.33□□□□□ -2.36
VPS39Q96JC1 Y_RNA.13-201ENST00000362403 112 ntBASIC0.33□□□□□ -2.36
VPS39Q96JC1 SNORA22.1-201ENST00000362701 134 ntBASIC0.33□□□□□ -2.36
VPS39Q96JC1 Y_RNA.430-201ENST00000384081 110 ntBASIC0.33□□□□□ -2.36
VPS39Q96JC1 RNU6-574P-201ENST00000384265 107 ntBASIC0.33□□□□□ -2.36
VPS39Q96JC1 Y_RNA.588-201ENST00000391254 102 ntBASIC0.33□□□□□ -2.36
VPS39Q96JC1 MIR548H3-201ENST00000408771 118 ntBASIC0.33□□□□□ -2.36
VPS39Q96JC1 SNORA25.12-201ENST00000516202 82 ntBASIC0.33□□□□□ -2.36
VPS39Q96JC1 RNU6-448P-201ENST00000517052 107 ntBASIC0.33□□□□□ -2.36
VPS39Q96JC1 MRPS18CP4-201ENST00000535821 231 ntBASIC0.33□□□□□ -2.36
VPS39Q96JC1 SNORA25.18-201ENST00000607153 114 ntBASIC0.33□□□□□ -2.36
VPS39Q96JC1 PVT1_3.1-201ENST00000620853 95 ntBASIC0.33□□□□□ -2.36
VPS39Q96JC1 IST1-227ENST00000626438 126 ntTSL 5 BASIC0.33□□□□□ -2.36
VPS39Q96JC1 U6.106-201ENST00000636360 105 ntBASIC0.33□□□□□ -2.36
VPS39Q96JC1 OMD-201ENST00000375550 2449 ntAPPRIS P1 TSL 1 (best) BASIC0.32□□□□□ -2.36
VPS39Q96JC1 Y_RNA.42-201ENST00000362660 108 ntBASIC0.32□□□□□ -2.36
VPS39Q96JC1 Y_RNA.60-201ENST00000362831 98 ntBASIC0.32□□□□□ -2.36
VPS39Q96JC1 Y_RNA.171-201ENST00000363760 102 ntBASIC0.32□□□□□ -2.36
VPS39Q96JC1 Y_RNA.454-201ENST00000384224 113 ntBASIC0.32□□□□□ -2.36
VPS39Q96JC1 Y_RNA.571-201ENST00000384753 98 ntBASIC0.32□□□□□ -2.36
VPS39Q96JC1 MIR216A-201ENST00000385063 110 ntBASIC0.32□□□□□ -2.36
VPS39Q96JC1 AL162399.1-201ENST00000426090 130 ntTSL 3 BASIC0.32□□□□□ -2.36
VPS39Q96JC1 AC133485.4-201ENST00000561835 220 ntBASIC0.32□□□□□ -2.36
VPS39Q96JC1 MIR4491-201ENST00000581087 68 ntBASIC0.32□□□□□ -2.36
VPS39Q96JC1 Y_RNA.20-201ENST00000362479 113 ntBASIC0.31□□□□□ -2.36
VPS39Q96JC1 SNORD114-23-201ENST00000363536 72 ntBASIC0.31□□□□□ -2.36
VPS39Q96JC1 RNA5SP117-201ENST00000365294 118 ntBASIC0.31□□□□□ -2.36
VPS39Q96JC1 RNU4-45P-201ENST00000365469 141 ntBASIC0.31□□□□□ -2.36
VPS39Q96JC1 VTRNA1-3-201ENST00000365645 89 ntBASIC0.31□□□□□ -2.36
VPS39Q96JC1 Y_RNA.412-201ENST00000384001 104 ntBASIC0.31□□□□□ -2.36
VPS39Q96JC1 RNU6-643P-201ENST00000384018 107 ntBASIC0.31□□□□□ -2.36
VPS39Q96JC1 SNORA18-201ENST00000384416 132 ntBASIC0.31□□□□□ -2.36
VPS39Q96JC1 MIR613-201ENST00000385248 95 ntBASIC0.31□□□□□ -2.36
VPS39Q96JC1 RNA5SP193-201ENST00000410353 107 ntBASIC0.31□□□□□ -2.36
VPS39Q96JC1 RNA5SP127-201ENST00000411051 133 ntBASIC0.31□□□□□ -2.36
VPS39Q96JC1 AL118496.2-201ENST00000448300 230 ntBASIC0.31□□□□□ -2.36
VPS39Q96JC1 RNU7-70P-201ENST00000516941 66 ntBASIC0.31□□□□□ -2.36
VPS39Q96JC1 RNU6-111P-201ENST00000517179 105 ntBASIC0.31□□□□□ -2.36
VPS39Q96JC1 DEFB131B-201ENST00000530210 213 ntAPPRIS P1 TSL 1 (best) BASIC0.31□□□□□ -2.36
VPS39Q96JC1 MIR3152-201ENST00000579801 74 ntBASIC0.31□□□□□ -2.36
VPS39Q96JC1 DEFB131A-201ENST00000334879 213 ntAPPRIS P1 TSL 1 (best) BASIC0.3□□□□□ -2.36
VPS39Q96JC1 SNORD44.1-201ENST00000363202 61 ntBASIC0.3□□□□□ -2.36
VPS39Q96JC1 SNORA36.1-201ENST00000363424 132 ntBASIC0.3□□□□□ -2.36
Retrieved 100 of 98,524 protein–RNA pairs in 282.8 ms