Protein–RNA interactions for Protein: Q96CM3

RPUSD4, Mitochondrial RNA pseudouridine synthase RPUSD4, humanhuman

Known RBP Predictions only

Length 377 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPUSD4Q96CM3 Y_RNA.54-201ENST00000362766 105 ntBASIC0.28□□□□□ -2.36
RPUSD4Q96CM3 RNU1-133P-201ENST00000364867 167 ntBASIC0.28□□□□□ -2.36
RPUSD4Q96CM3 RNU6-275P-201ENST00000364910 107 ntBASIC0.28□□□□□ -2.36
RPUSD4Q96CM3 RNU6-643P-201ENST00000384018 107 ntBASIC0.28□□□□□ -2.36
RPUSD4Q96CM3 Y_RNA.515-201ENST00000384535 112 ntBASIC0.28□□□□□ -2.36
RPUSD4Q96CM3 SNORA20-201ENST00000384662 132 ntBASIC0.28□□□□□ -2.36
RPUSD4Q96CM3 Y_RNA.571-201ENST00000384753 98 ntBASIC0.28□□□□□ -2.36
RPUSD4Q96CM3 MIR518A1-201ENST00000385068 85 ntBASIC0.28□□□□□ -2.36
RPUSD4Q96CM3 AC096949.1-201ENST00000412047 152 ntBASIC0.28□□□□□ -2.36
RPUSD4Q96CM3 RNA5SP94-201ENST00000516917 108 ntBASIC0.28□□□□□ -2.36
RPUSD4Q96CM3 AC141846.1-201ENST00000568348 142 ntBASIC0.28□□□□□ -2.36
RPUSD4Q96CM3 AL162730.1-201ENST00000605734 292 ntBASIC0.28□□□□□ -2.36
RPUSD4Q96CM3 uc_338.16-201ENST00000621804 95 ntBASIC0.28□□□□□ -2.36
RPUSD4Q96CM3 AL596211.1-201ENST00000569873 2277 ntBASIC0.27□□□□□ -2.37
RPUSD4Q96CM3 DEFB131A-201ENST00000334879 213 ntAPPRIS P1 TSL 1 (best) BASIC0.27□□□□□ -2.37
RPUSD4Q96CM3 Y_RNA.4-201ENST00000362333 112 ntBASIC0.27□□□□□ -2.37
RPUSD4Q96CM3 Y_RNA.75-201ENST00000362927 97 ntBASIC0.27□□□□□ -2.37
RPUSD4Q96CM3 RNU6-1327P-201ENST00000365302 105 ntBASIC0.27□□□□□ -2.37
RPUSD4Q96CM3 Y_RNA.350-201ENST00000365409 98 ntBASIC0.27□□□□□ -2.37
RPUSD4Q96CM3 RNU6-949P-201ENST00000384040 107 ntBASIC0.27□□□□□ -2.37
RPUSD4Q96CM3 MIR568-201ENST00000385036 95 ntBASIC0.27□□□□□ -2.37
RPUSD4Q96CM3 Y_RNA.588-201ENST00000391254 102 ntBASIC0.27□□□□□ -2.37
RPUSD4Q96CM3 MIR1302-3-201ENST00000408128 138 ntBASIC0.27□□□□□ -2.37
RPUSD4Q96CM3 RNU6ATAC20P-201ENST00000408436 127 ntBASIC0.27□□□□□ -2.37
RPUSD4Q96CM3 RNA5SP237-201ENST00000410414 113 ntBASIC0.27□□□□□ -2.37
RPUSD4Q96CM3 RNU6-1086P-201ENST00000410930 100 ntBASIC0.27□□□□□ -2.37
RPUSD4Q96CM3 SNORA40.8-201ENST00000411034 126 ntBASIC0.27□□□□□ -2.37
RPUSD4Q96CM3 Y_RNA.626-201ENST00000411288 95 ntBASIC0.27□□□□□ -2.37
RPUSD4Q96CM3 RNU6-863P-201ENST00000515989 104 ntBASIC0.27□□□□□ -2.37
RPUSD4Q96CM3 RNU4-71P-201ENST00000516258 113 ntBASIC0.27□□□□□ -2.37
RPUSD4Q96CM3 MRPS18CP4-201ENST00000535821 231 ntBASIC0.27□□□□□ -2.37
RPUSD4Q96CM3 MIR4308-201ENST00000580634 81 ntBASIC0.27□□□□□ -2.37
RPUSD4Q96CM3 AL360085.1-201ENST00000604713 532 ntBASIC0.27□□□□□ -2.37
RPUSD4Q96CM3 FAM19A1-204ENST00000617084 159 ntTSL 5 BASIC0.27□□□□□ -2.37
RPUSD4Q96CM3 CCDC73-201ENST00000335185 3849 ntAPPRIS P2 TSL 2 BASIC0.27□□□□□ -2.37
RPUSD4Q96CM3 Y_RNA.269-201ENST00000364685 89 ntBASIC0.26□□□□□ -2.37
RPUSD4Q96CM3 RNA5SP517-201ENST00000364724 117 ntBASIC0.26□□□□□ -2.37
RPUSD4Q96CM3 Y_RNA.308-201ENST00000365043 101 ntBASIC0.26□□□□□ -2.37
RPUSD4Q96CM3 U8.15-201ENST00000390947 134 ntBASIC0.26□□□□□ -2.37
RPUSD4Q96CM3 RNU6ATAC42P-201ENST00000408637 95 ntBASIC0.26□□□□□ -2.37
RPUSD4Q96CM3 SNORD93-201ENST00000408813 74 ntBASIC0.26□□□□□ -2.37
RPUSD4Q96CM3 RNU4-83P-201ENST00000410863 133 ntBASIC0.26□□□□□ -2.37
RPUSD4Q96CM3 MTND2P23-201ENST00000422990 651 ntBASIC0.26□□□□□ -2.37
RPUSD4Q96CM3 SEPT7P4-201ENST00000437076 306 ntBASIC0.26□□□□□ -2.37
RPUSD4Q96CM3 AC108740.1-201ENST00000498629 225 ntBASIC0.26□□□□□ -2.37
RPUSD4Q96CM3 Y_RNA.797-201ENST00000515977 94 ntBASIC0.26□□□□□ -2.37
RPUSD4Q96CM3 RNU6-1149P-201ENST00000516810 97 ntBASIC0.26□□□□□ -2.37
RPUSD4Q96CM3 RNU7-70P-201ENST00000516941 66 ntBASIC0.26□□□□□ -2.37
RPUSD4Q96CM3 SNORD118-201ENST00000363593 134 ntBASIC0.25□□□□□ -2.37
RPUSD4Q96CM3 Y_RNA.224-201ENST00000364308 111 ntBASIC0.25□□□□□ -2.37
RPUSD4Q96CM3 SNORA25.7-201ENST00000364375 127 ntBASIC0.25□□□□□ -2.37
RPUSD4Q96CM3 RNA5SP117-201ENST00000365294 118 ntBASIC0.25□□□□□ -2.37
RPUSD4Q96CM3 RNU5E-9P-201ENST00000411164 104 ntBASIC0.25□□□□□ -2.37
RPUSD4Q96CM3 RNY3P16-201ENST00000516338 101 ntBASIC0.25□□□□□ -2.37
RPUSD4Q96CM3 RNU6-135P-201ENST00000516769 101 ntBASIC0.25□□□□□ -2.37
RPUSD4Q96CM3 MIR3678-201ENST00000578455 94 ntBASIC0.25□□□□□ -2.37
RPUSD4Q96CM3 RNU2-4P-201ENST00000606190 192 ntBASIC0.25□□□□□ -2.37
RPUSD4Q96CM3 AC062037.2-201ENST00000610137 73 ntBASIC0.25□□□□□ -2.37
RPUSD4Q96CM3 MIR6082-201ENST00000613604 109 ntBASIC0.25□□□□□ -2.37
RPUSD4Q96CM3 AC243829.3-201ENST00000622177 108 ntBASIC0.25□□□□□ -2.37
RPUSD4Q96CM3 SNORD44.1-201ENST00000363202 61 ntBASIC0.24□□□□□ -2.37
RPUSD4Q96CM3 MIR499A-201ENST00000384903 122 ntBASIC0.24□□□□□ -2.37
RPUSD4Q96CM3 RNU6-493P-201ENST00000391321 108 ntBASIC0.24□□□□□ -2.37
RPUSD4Q96CM3 RNU6-1023P-201ENST00000516137 106 ntBASIC0.24□□□□□ -2.37
RPUSD4Q96CM3 RNU6-1194P-201ENST00000516208 104 ntBASIC0.24□□□□□ -2.37
RPUSD4Q96CM3 RNU6-327P-201ENST00000516270 127 ntBASIC0.24□□□□□ -2.37
RPUSD4Q96CM3 RNA5SP134-201ENST00000516492 96 ntBASIC0.24□□□□□ -2.37
RPUSD4Q96CM3 Y_RNA.757-201ENST00000578934 114 ntBASIC0.24□□□□□ -2.37
RPUSD4Q96CM3 MIR4719-201ENST00000585233 84 ntBASIC0.24□□□□□ -2.37
RPUSD4Q96CM3 AC078938.1-201ENST00000620993 318 ntBASIC0.24□□□□□ -2.37
RPUSD4Q96CM3 SNORD115-2-201ENST00000362842 82 ntBASIC0.23□□□□□ -2.37
RPUSD4Q96CM3 Y_RNA.174-201ENST00000363781 105 ntBASIC0.23□□□□□ -2.37
RPUSD4Q96CM3 SNORD27-201ENST00000363981 72 ntBASIC0.23□□□□□ -2.37
RPUSD4Q96CM3 SNORD115-20-201ENST00000365099 82 ntBASIC0.23□□□□□ -2.37
RPUSD4Q96CM3 SNORA8.2-201ENST00000384372 139 ntBASIC0.23□□□□□ -2.37
RPUSD4Q96CM3 RNU4-70P-201ENST00000384579 139 ntBASIC0.23□□□□□ -2.37
RPUSD4Q96CM3 RNA5SP247-201ENST00000411181 105 ntBASIC0.23□□□□□ -2.37
RPUSD4Q96CM3 SNORD71-201ENST00000411292 86 ntBASIC0.23□□□□□ -2.37
RPUSD4Q96CM3 RNA5SP236-201ENST00000516169 116 ntBASIC0.23□□□□□ -2.37
RPUSD4Q96CM3 RNU6-1045P-201ENST00000516321 107 ntBASIC0.23□□□□□ -2.37
RPUSD4Q96CM3 RNU6-1223P-201ENST00000517124 104 ntBASIC0.23□□□□□ -2.37
RPUSD4Q96CM3 AC243829.6-201ENST00000612652 106 ntBASIC0.23□□□□□ -2.37
RPUSD4Q96CM3 NEAT1_2.1-201ENST00000620525 105 ntBASIC0.23□□□□□ -2.37
RPUSD4Q96CM3 UGP2-230ENST00000626380 276 ntTSL 5 BASIC0.23□□□□□ -2.37
RPUSD4Q96CM3 Y_RNA.13-201ENST00000362403 112 ntBASIC0.22□□□□□ -2.37
RPUSD4Q96CM3 Y_RNA.182-201ENST00000363880 111 ntBASIC0.22□□□□□ -2.37
RPUSD4Q96CM3 RNY1P13-201ENST00000365030 105 ntBASIC0.22□□□□□ -2.37
RPUSD4Q96CM3 Y_RNA.412-201ENST00000384001 104 ntBASIC0.22□□□□□ -2.37
RPUSD4Q96CM3 RNY1P6-201ENST00000384193 109 ntBASIC0.22□□□□□ -2.37
RPUSD4Q96CM3 RNU6-918P-201ENST00000391219 106 ntBASIC0.22□□□□□ -2.37
RPUSD4Q96CM3 RNA5SP220-201ENST00000516298 104 ntBASIC0.22□□□□□ -2.37
RPUSD4Q96CM3 RNU7-35P-201ENST00000517174 62 ntBASIC0.22□□□□□ -2.37
RPUSD4Q96CM3 AC022523.2-201ENST00000561045 150 ntBASIC0.22□□□□□ -2.37
RPUSD4Q96CM3 MIR4431-201ENST00000579990 94 ntBASIC0.22□□□□□ -2.37
RPUSD4Q96CM3 MIR4491-201ENST00000581087 68 ntBASIC0.22□□□□□ -2.37
RPUSD4Q96CM3 MIR3149-201ENST00000584629 83 ntBASIC0.22□□□□□ -2.37
RPUSD4Q96CM3 U4.1-201ENST00000620349 87 ntBASIC0.22□□□□□ -2.37
RPUSD4Q96CM3 MIR6513-201ENST00000621188 64 ntBASIC0.22□□□□□ -2.37
RPUSD4Q96CM3 MIR6828-201ENST00000636181 60 ntBASIC0.22□□□□□ -2.37
RPUSD4Q96CM3 MIR103A1-201ENST00000362165 78 ntBASIC0.21□□□□□ -2.38
Retrieved 100 of 98,524 protein–RNA pairs in 450.1 ms