Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 AL596211.1-201ENST00000569873 2277 ntBASIC-0.1□□□□□ -2.43
HDDC3Q8N4P3 Y_RNA.19-201ENST00000362462 99 ntBASIC-0.11□□□□□ -2.43
HDDC3Q8N4P3 Y_RNA.31-201ENST00000362574 102 ntBASIC-0.11□□□□□ -2.43
HDDC3Q8N4P3 SNORD114-5-201ENST00000362928 70 ntBASIC-0.11□□□□□ -2.43
HDDC3Q8N4P3 Y_RNA.199-201ENST00000364014 102 ntBASIC-0.11□□□□□ -2.43
HDDC3Q8N4P3 RNU6-597P-201ENST00000365620 102 ntBASIC-0.11□□□□□ -2.43
HDDC3Q8N4P3 TRAJ54-201ENST00000390484 60 ntAPPRIS P1 BASIC-0.11□□□□□ -2.43
HDDC3Q8N4P3 U8.15-201ENST00000390947 134 ntBASIC-0.11□□□□□ -2.43
HDDC3Q8N4P3 RNU6-758P-201ENST00000516292 89 ntBASIC-0.11□□□□□ -2.43
HDDC3Q8N4P3 AC141846.1-201ENST00000568348 142 ntBASIC-0.11□□□□□ -2.43
HDDC3Q8N4P3 MIR6755-201ENST00000619993 66 ntBASIC-0.11□□□□□ -2.43
HDDC3Q8N4P3 Y_RNA.430-201ENST00000384081 110 ntBASIC-0.12□□□□□ -2.43
HDDC3Q8N4P3 Y_RNA.697-201ENST00000516776 113 ntBASIC-0.12□□□□□ -2.43
HDDC3Q8N4P3 RNU7-70P-201ENST00000516941 66 ntBASIC-0.12□□□□□ -2.43
HDDC3Q8N4P3 AC091932.4-201ENST00000623386 200 ntBASIC-0.12□□□□□ -2.43
HDDC3Q8N4P3 UBE2WP1-201ENST00000362030 340 ntBASIC-0.13□□□□□ -2.43
HDDC3Q8N4P3 SNORA1-201ENST00000384107 130 ntBASIC-0.13□□□□□ -2.43
HDDC3Q8N4P3 MIR760-201ENST00000390220 80 ntBASIC-0.13□□□□□ -2.43
HDDC3Q8N4P3 RNA5SP25-201ENST00000410815 110 ntBASIC-0.13□□□□□ -2.43
HDDC3Q8N4P3 RPL21P38-201ENST00000418090 167 ntBASIC-0.13□□□□□ -2.43
HDDC3Q8N4P3 AC141557.1-201ENST00000540982 400 ntBASIC-0.13□□□□□ -2.43
HDDC3Q8N4P3 MIR4491-201ENST00000581087 68 ntBASIC-0.13□□□□□ -2.43
HDDC3Q8N4P3 MIR6828-201ENST00000636181 60 ntBASIC-0.13□□□□□ -2.43
HDDC3Q8N4P3 RNA5SP368-201ENST00000364298 116 ntBASIC-0.14□□□□□ -2.43
HDDC3Q8N4P3 SNORD42.2-201ENST00000365570 69 ntBASIC-0.14□□□□□ -2.43
HDDC3Q8N4P3 RNU6-1289P-201ENST00000384431 106 ntBASIC-0.14□□□□□ -2.43
HDDC3Q8N4P3 Y_RNA.536-201ENST00000384621 113 ntBASIC-0.14□□□□□ -2.43
HDDC3Q8N4P3 RNU6-535P-201ENST00000384722 107 ntBASIC-0.14□□□□□ -2.43
HDDC3Q8N4P3 Y_RNA.588-201ENST00000391254 102 ntBASIC-0.14□□□□□ -2.43
HDDC3Q8N4P3 ELOCP20-201ENST00000422460 345 ntBASIC-0.14□□□□□ -2.43
HDDC3Q8N4P3 AL035258.1-201ENST00000439450 439 ntTSL 3 BASIC-0.14□□□□□ -2.43
HDDC3Q8N4P3 RNU6-1143P-201ENST00000516125 104 ntBASIC-0.14□□□□□ -2.43
HDDC3Q8N4P3 RNA5SP47-201ENST00000517230 109 ntBASIC-0.14□□□□□ -2.43
HDDC3Q8N4P3 RNU6-988P-201ENST00000519081 107 ntBASIC-0.14□□□□□ -2.43
HDDC3Q8N4P3 MIR3129-201ENST00000581095 76 ntBASIC-0.14□□□□□ -2.43
HDDC3Q8N4P3 MIR5197-201ENST00000583721 112 ntBASIC-0.14□□□□□ -2.43
HDDC3Q8N4P3 AP001180.6-201ENST00000584918 159 ntBASIC-0.14□□□□□ -2.43
HDDC3Q8N4P3 AC097639.2-201ENST00000603159 172 ntBASIC-0.14□□□□□ -2.43
HDDC3Q8N4P3 Y_RNA.16-201ENST00000362421 102 ntBASIC-0.15□□□□□ -2.43
HDDC3Q8N4P3 RNU6-187P-201ENST00000384139 106 ntBASIC-0.15□□□□□ -2.43
HDDC3Q8N4P3 RNU6-30P-201ENST00000384561 107 ntBASIC-0.15□□□□□ -2.43
HDDC3Q8N4P3 Y_RNA.542-201ENST00000384641 111 ntBASIC-0.15□□□□□ -2.43
HDDC3Q8N4P3 MT-TT-201ENST00000387460 66 ntBASIC-0.15□□□□□ -2.43
HDDC3Q8N4P3 SNRPGP8-201ENST00000454064 226 ntBASIC-0.15□□□□□ -2.43
HDDC3Q8N4P3 AC082651.2-201ENST00000496833 166 ntBASIC-0.15□□□□□ -2.43
HDDC3Q8N4P3 SERF1AP1-201ENST00000514575 187 ntBASIC-0.15□□□□□ -2.43
HDDC3Q8N4P3 SCARNA24.2-201ENST00000516968 130 ntBASIC-0.15□□□□□ -2.43
HDDC3Q8N4P3 MIR4639-201ENST00000584938 69 ntBASIC-0.15□□□□□ -2.43
HDDC3Q8N4P3 Y_RNA.28-201ENST00000362554 111 ntBASIC-0.16□□□□□ -2.44
HDDC3Q8N4P3 Y_RNA.152-201ENST00000363578 100 ntBASIC-0.16□□□□□ -2.44
HDDC3Q8N4P3 Y_RNA.210-201ENST00000364161 110 ntBASIC-0.16□□□□□ -2.44
HDDC3Q8N4P3 Y_RNA.214-201ENST00000364201 112 ntBASIC-0.16□□□□□ -2.44
HDDC3Q8N4P3 Y_RNA.419-201ENST00000384041 102 ntBASIC-0.16□□□□□ -2.44
HDDC3Q8N4P3 RNU6-291P-201ENST00000384720 107 ntBASIC-0.16□□□□□ -2.44
HDDC3Q8N4P3 MIR214-201ENST00000385214 110 ntBASIC-0.16□□□□□ -2.44
HDDC3Q8N4P3 MIR643-201ENST00000385267 97 ntBASIC-0.16□□□□□ -2.44
HDDC3Q8N4P3 TRAJ2-201ENST00000390535 66 ntAPPRIS P1 BASIC-0.16□□□□□ -2.44
HDDC3Q8N4P3 RNU6-1228P-201ENST00000391014 107 ntBASIC-0.16□□□□□ -2.44
HDDC3Q8N4P3 AL606845.1-201ENST00000404881 255 ntBASIC-0.16□□□□□ -2.44
HDDC3Q8N4P3 AL022718.1-201ENST00000412004 84 ntBASIC-0.16□□□□□ -2.44
HDDC3Q8N4P3 AC022028.1-201ENST00000412054 408 ntBASIC-0.16□□□□□ -2.44
HDDC3Q8N4P3 MIR4493-201ENST00000584016 73 ntBASIC-0.16□□□□□ -2.44
HDDC3Q8N4P3 MIR376A2-201ENST00000636782 80 ntBASIC-0.16□□□□□ -2.44
HDDC3Q8N4P3 Y_RNA.23-201ENST00000362496 106 ntBASIC-0.17□□□□□ -2.44
HDDC3Q8N4P3 SNORA22.1-201ENST00000362701 134 ntBASIC-0.17□□□□□ -2.44
HDDC3Q8N4P3 Y_RNA.276-201ENST00000364732 109 ntBASIC-0.17□□□□□ -2.44
HDDC3Q8N4P3 Y_RNA.362-201ENST00000365518 110 ntBASIC-0.17□□□□□ -2.44
HDDC3Q8N4P3 RNU6-949P-201ENST00000384040 107 ntBASIC-0.17□□□□□ -2.44
HDDC3Q8N4P3 Y_RNA.539-201ENST00000384635 107 ntBASIC-0.17□□□□□ -2.44
HDDC3Q8N4P3 SNORD28-201ENST00000384706 75 ntBASIC-0.17□□□□□ -2.44
HDDC3Q8N4P3 RNU6-127P-201ENST00000390897 107 ntBASIC-0.17□□□□□ -2.44
HDDC3Q8N4P3 SNORA79-201ENST00000408376 140 ntBASIC-0.17□□□□□ -2.44
HDDC3Q8N4P3 Y_RNA.618-201ENST00000410949 107 ntBASIC-0.17□□□□□ -2.44
HDDC3Q8N4P3 AC113618.1-201ENST00000416747 285 ntBASIC-0.17□□□□□ -2.44
HDDC3Q8N4P3 RNU6-848P-201ENST00000515948 107 ntBASIC-0.17□□□□□ -2.44
HDDC3Q8N4P3 RNU6-617P-201ENST00000516147 107 ntBASIC-0.17□□□□□ -2.44
HDDC3Q8N4P3 RNU6-473P-201ENST00000516164 107 ntBASIC-0.17□□□□□ -2.44
HDDC3Q8N4P3 RNU6-1049P-201ENST00000516414 107 ntBASIC-0.17□□□□□ -2.44
HDDC3Q8N4P3 MTND5P34-201ENST00000568888 325 ntBASIC-0.17□□□□□ -2.44
HDDC3Q8N4P3 AL627230.5-201ENST00000619807 58 ntBASIC-0.17□□□□□ -2.44
HDDC3Q8N4P3 KCNQ1OT1_5.1-201ENST00000621902 226 ntBASIC-0.17□□□□□ -2.44
HDDC3Q8N4P3 Y_RNA.275-201ENST00000364726 110 ntBASIC-0.18□□□□□ -2.44
HDDC3Q8N4P3 RNU5E-4P-201ENST00000364931 120 ntBASIC-0.18□□□□□ -2.44
HDDC3Q8N4P3 AC015818.4-201ENST00000580931 353 ntTSL 5 BASIC-0.18□□□□□ -2.44
HDDC3Q8N4P3 MIR4290-201ENST00000583807 95 ntBASIC-0.18□□□□□ -2.44
HDDC3Q8N4P3 RNU6-806P-201ENST00000365147 105 ntBASIC-0.19□□□□□ -2.44
HDDC3Q8N4P3 RNU6-1126P-201ENST00000384002 107 ntBASIC-0.19□□□□□ -2.44
HDDC3Q8N4P3 SNORA18-201ENST00000384416 132 ntBASIC-0.19□□□□□ -2.44
HDDC3Q8N4P3 Y_RNA.552-201ENST00000384665 112 ntBASIC-0.19□□□□□ -2.44
HDDC3Q8N4P3 MIR604-201ENST00000384880 94 ntBASIC-0.19□□□□□ -2.44
HDDC3Q8N4P3 MIR616-201ENST00000385293 97 ntBASIC-0.19□□□□□ -2.44
HDDC3Q8N4P3 RNU6-1203P-201ENST00000410703 110 ntBASIC-0.19□□□□□ -2.44
HDDC3Q8N4P3 AC244669.1-204ENST00000621564 178 ntBASIC-0.19□□□□□ -2.44
HDDC3Q8N4P3 MT-ATP8-201ENST00000361851 207 ntAPPRIS P1 BASIC-0.2□□□□□ -2.44
HDDC3Q8N4P3 Y_RNA.117-201ENST00000363294 101 ntBASIC-0.2□□□□□ -2.44
HDDC3Q8N4P3 RNA5SP128-201ENST00000365305 116 ntBASIC-0.2□□□□□ -2.44
HDDC3Q8N4P3 MIR593-201ENST00000384856 100 ntBASIC-0.2□□□□□ -2.44
HDDC3Q8N4P3 RNU5E-9P-201ENST00000411164 104 ntBASIC-0.2□□□□□ -2.44
HDDC3Q8N4P3 RNU6-1194P-201ENST00000516208 104 ntBASIC-0.2□□□□□ -2.44
HDDC3Q8N4P3 RNU6-1338P-201ENST00000516328 91 ntBASIC-0.2□□□□□ -2.44
Retrieved 100 of 98,524 protein–RNA pairs in 1185.3 ms