Protein–RNA interactions for Protein: Q3LFD5

USP41, Putative ubiquitin carboxyl-terminal hydrolase 41, humanhuman

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP41Q3LFD5 SNORD12C-201ENST00000386307 89 ntBASIC0.93□□□□□ -2.26
USP41Q3LFD5 TRAJ22-201ENST00000390515 63 ntAPPRIS P1 BASIC0.93□□□□□ -2.26
USP41Q3LFD5 RNU6-1319P-201ENST00000390855 104 ntBASIC0.93□□□□□ -2.26
USP41Q3LFD5 RNU6-747P-201ENST00000390928 104 ntBASIC0.93□□□□□ -2.26
USP41Q3LFD5 RNU6-241P-201ENST00000391148 104 ntBASIC0.93□□□□□ -2.26
USP41Q3LFD5 CPEB3_ribozyme.1-201ENST00000408115 78 ntBASIC0.93□□□□□ -2.26
USP41Q3LFD5 RNU6-177P-201ENST00000411257 104 ntBASIC0.93□□□□□ -2.26
USP41Q3LFD5 SNORD83.1-201ENST00000411362 77 ntBASIC0.93□□□□□ -2.26
USP41Q3LFD5 snoU13.21-201ENST00000459368 105 ntBASIC0.93□□□□□ -2.26
USP41Q3LFD5 RNU7-121P-201ENST00000516604 62 ntBASIC0.93□□□□□ -2.26
USP41Q3LFD5 MIR3646-201ENST00000578301 84 ntBASIC0.93□□□□□ -2.26
USP41Q3LFD5 MIR3671-201ENST00000580455 88 ntBASIC0.93□□□□□ -2.26
USP41Q3LFD5 DNAJC19P2-201ENST00000593340 302 ntBASIC0.93□□□□□ -2.26
USP41Q3LFD5 MIR6740-201ENST00000618268 113 ntBASIC0.93□□□□□ -2.26
USP41Q3LFD5 Y_RNA.270-201ENST00000364693 104 ntBASIC0.92□□□□□ -2.26
USP41Q3LFD5 Y_RNA.272-201ENST00000364696 102 ntBASIC0.92□□□□□ -2.26
USP41Q3LFD5 RNU6-934P-201ENST00000365154 107 ntBASIC0.92□□□□□ -2.26
USP41Q3LFD5 Y_RNA.441-201ENST00000384123 112 ntBASIC0.92□□□□□ -2.26
USP41Q3LFD5 RNU6ATAC33P-201ENST00000408647 126 ntBASIC0.92□□□□□ -2.26
USP41Q3LFD5 POLR2J4-204ENST00000418424 324 ntBASIC0.92□□□□□ -2.26
USP41Q3LFD5 RNU6-794P-201ENST00000517261 64 ntBASIC0.92□□□□□ -2.26
USP41Q3LFD5 AC087277.2-201ENST00000533203 151 ntTSL 5 BASIC0.92□□□□□ -2.26
USP41Q3LFD5 AC104465.1-201ENST00000611365 139 ntBASIC0.92□□□□□ -2.26
USP41Q3LFD5 AC021613.1-201ENST00000623880 111 ntBASIC0.92□□□□□ -2.26
USP41Q3LFD5 Y_RNA.497-201ENST00000384447 98 ntBASIC0.91□□□□□ -2.26
USP41Q3LFD5 Y_RNA.540-201ENST00000384638 111 ntBASIC0.91□□□□□ -2.26
USP41Q3LFD5 MIR598-201ENST00000384868 97 ntBASIC0.91□□□□□ -2.26
USP41Q3LFD5 MIR100-201ENST00000385259 80 ntBASIC0.91□□□□□ -2.26
USP41Q3LFD5 RNU6-1135P-201ENST00000411083 103 ntBASIC0.91□□□□□ -2.26
USP41Q3LFD5 AC015818.7-201ENST00000428754 109 ntBASIC0.91□□□□□ -2.26
USP41Q3LFD5 AC087499.7-201ENST00000441958 109 ntBASIC0.91□□□□□ -2.26
USP41Q3LFD5 AC073127.1-201ENST00000447336 333 ntTSL 3 BASIC0.91□□□□□ -2.26
USP41Q3LFD5 RNA5SP255-201ENST00000516370 107 ntBASIC0.91□□□□□ -2.26
USP41Q3LFD5 AC010332.2-201ENST00000613083 1904 ntBASIC0.91□□□□□ -2.26
USP41Q3LFD5 MIR1-1-201ENST00000362147 71 ntBASIC0.9□□□□□ -2.27
USP41Q3LFD5 Y_RNA.150-201ENST00000363562 102 ntBASIC0.9□□□□□ -2.27
USP41Q3LFD5 RNU1-36P-201ENST00000365130 165 ntBASIC0.9□□□□□ -2.27
USP41Q3LFD5 AC004941.2-201ENST00000427009 228 ntBASIC0.9□□□□□ -2.27
USP41Q3LFD5 AC108059.2-201ENST00000434626 151 ntBASIC0.9□□□□□ -2.27
USP41Q3LFD5 snoU13.2-201ENST00000459201 104 ntBASIC0.9□□□□□ -2.27
USP41Q3LFD5 AC092071.1-201ENST00000597260 549 ntTSL 5 BASIC0.9□□□□□ -2.27
USP41Q3LFD5 FAM71BP1-201ENST00000604431 523 ntBASIC0.9□□□□□ -2.27
USP41Q3LFD5 AL136317.1-201ENST00000612653 226 ntBASIC0.9□□□□□ -2.27
USP41Q3LFD5 PVT1_3.1-201ENST00000620853 95 ntBASIC0.9□□□□□ -2.27
USP41Q3LFD5 SNORA22.1-201ENST00000362701 134 ntBASIC0.89□□□□□ -2.27
USP41Q3LFD5 RNU4-11P-201ENST00000365287 132 ntBASIC0.89□□□□□ -2.27
USP41Q3LFD5 RNY1P6-201ENST00000384193 109 ntBASIC0.89□□□□□ -2.27
USP41Q3LFD5 RNU6-1237P-201ENST00000384777 107 ntBASIC0.89□□□□□ -2.27
USP41Q3LFD5 RNU6ATAC6P-201ENST00000408132 126 ntBASIC0.89□□□□□ -2.27
USP41Q3LFD5 MTATP6P21-201ENST00000440681 189 ntBASIC0.89□□□□□ -2.27
USP41Q3LFD5 U7.7-201ENST00000459276 60 ntBASIC0.89□□□□□ -2.27
USP41Q3LFD5 RPL39P28-201ENST00000465655 155 ntBASIC0.89□□□□□ -2.27
USP41Q3LFD5 RNU6-1110P-201ENST00000516462 101 ntBASIC0.89□□□□□ -2.27
USP41Q3LFD5 MIR4771-2-201ENST00000577758 74 ntBASIC0.89□□□□□ -2.27
USP41Q3LFD5 MIR4771-1-201ENST00000582617 74 ntBASIC0.89□□□□□ -2.27
USP41Q3LFD5 uc_338.6-201ENST00000613544 171 ntBASIC0.89□□□□□ -2.27
USP41Q3LFD5 RNY1P11-201ENST00000363759 113 ntBASIC0.88□□□□□ -2.27
USP41Q3LFD5 RNU6-151P-201ENST00000364158 107 ntBASIC0.88□□□□□ -2.27
USP41Q3LFD5 RNU6-1335P-201ENST00000365426 107 ntBASIC0.88□□□□□ -2.27
USP41Q3LFD5 RNU6-449P-201ENST00000383914 107 ntBASIC0.88□□□□□ -2.27
USP41Q3LFD5 Y_RNA.430-201ENST00000384081 110 ntBASIC0.88□□□□□ -2.27
USP41Q3LFD5 MIR1827-201ENST00000408549 66 ntBASIC0.88□□□□□ -2.27
USP41Q3LFD5 RNU6-1165P-201ENST00000410119 107 ntBASIC0.88□□□□□ -2.27
USP41Q3LFD5 RPS26P5-201ENST00000418544 335 ntBASIC0.88□□□□□ -2.27
USP41Q3LFD5 ACA64.5-201ENST00000516207 127 ntBASIC0.88□□□□□ -2.27
USP41Q3LFD5 FTX_2.1-201ENST00000618816 94 ntBASIC0.88□□□□□ -2.27
USP41Q3LFD5 Y_RNA.8-201ENST00000362353 102 ntBASIC0.87□□□□□ -2.27
USP41Q3LFD5 RNU6-1130P-201ENST00000365434 107 ntBASIC0.87□□□□□ -2.27
USP41Q3LFD5 SNORD18B-201ENST00000365659 72 ntBASIC0.87□□□□□ -2.27
USP41Q3LFD5 Y_RNA.584-201ENST00000391090 114 ntBASIC0.87□□□□□ -2.27
USP41Q3LFD5 RNA5SP237-201ENST00000410414 113 ntBASIC0.87□□□□□ -2.27
USP41Q3LFD5 AC113410.1-201ENST00000505029 247 ntBASIC0.87□□□□□ -2.27
USP41Q3LFD5 RNA5SP236-201ENST00000516169 116 ntBASIC0.87□□□□□ -2.27
USP41Q3LFD5 AC112693.2-201ENST00000556538 232 ntBASIC0.87□□□□□ -2.27
USP41Q3LFD5 SNORD116-18-201ENST00000383961 92 ntBASIC0.86□□□□□ -2.27
USP41Q3LFD5 RNU6-804P-201ENST00000384286 107 ntBASIC0.86□□□□□ -2.27
USP41Q3LFD5 RNU6-342P-201ENST00000384521 104 ntBASIC0.86□□□□□ -2.27
USP41Q3LFD5 RNA5SP436-201ENST00000516020 115 ntBASIC0.86□□□□□ -2.27
USP41Q3LFD5 RNU6-977P-201ENST00000516411 103 ntBASIC0.86□□□□□ -2.27
USP41Q3LFD5 Y_RNA.778-201ENST00000620203 90 ntBASIC0.86□□□□□ -2.27
USP41Q3LFD5 MIR6841-201ENST00000637129 72 ntBASIC0.86□□□□□ -2.27
USP41Q3LFD5 CCDC14-221ENST00000489746 6476 ntAPPRIS ALT2 TSL 1 (best) BASIC0.85□□□□□ -2.27
USP41Q3LFD5 RNU6-690P-201ENST00000365242 106 ntBASIC0.85□□□□□ -2.27
USP41Q3LFD5 RNU6-886P-201ENST00000384319 105 ntBASIC0.85□□□□□ -2.27
USP41Q3LFD5 RNU2-64P-201ENST00000411315 191 ntBASIC0.85□□□□□ -2.27
USP41Q3LFD5 MIR18B-201ENST00000454574 71 ntBASIC0.85□□□□□ -2.27
USP41Q3LFD5 RNU6-893P-201ENST00000458841 100 ntBASIC0.85□□□□□ -2.27
USP41Q3LFD5 RNA5SP480-201ENST00000516840 109 ntBASIC0.85□□□□□ -2.27
USP41Q3LFD5 RNU2-60P-201ENST00000517290 128 ntBASIC0.85□□□□□ -2.27
USP41Q3LFD5 AC025627.3-201ENST00000582078 182 ntBASIC0.85□□□□□ -2.27
USP41Q3LFD5 FAM19A1-204ENST00000617084 159 ntTSL 5 BASIC0.85□□□□□ -2.27
USP41Q3LFD5 AC023934.1-201ENST00000574529 2389 ntBASIC0.85□□□□□ -2.27
USP41Q3LFD5 RNU6-349P-201ENST00000362402 107 ntBASIC0.84□□□□□ -2.27
USP41Q3LFD5 SNORD114-2-201ENST00000363953 78 ntBASIC0.84□□□□□ -2.27
USP41Q3LFD5 SNORD105-201ENST00000386910 85 ntBASIC0.84□□□□□ -2.27
USP41Q3LFD5 RNU6-394P-201ENST00000410735 107 ntBASIC0.84□□□□□ -2.27
USP41Q3LFD5 RNU5E-3P-201ENST00000515913 68 ntBASIC0.84□□□□□ -2.27
USP41Q3LFD5 RNU6-351P-201ENST00000516097 100 ntBASIC0.84□□□□□ -2.27
USP41Q3LFD5 AC020891.4-201ENST00000605745 93 ntBASIC0.84□□□□□ -2.27
USP41Q3LFD5 AC098479.1-201ENST00000609225 154 ntBASIC0.84□□□□□ -2.27
Retrieved 100 of 98,524 protein–RNA pairs in 166.9 ms