Protein–RNA interactions for Protein: Q15475

SIX1, Homeobox protein SIX1, humanhuman

Predicted RBP Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX1Q15475 Y_RNA.662-201ENST00000516028 97 ntBASIC0.73□□□□□ -2.29
SIX1Q15475 MIR3646-201ENST00000578301 84 ntBASIC0.73□□□□□ -2.29
SIX1Q15475 Y_RNA.430-201ENST00000384081 110 ntBASIC0.72□□□□□ -2.29
SIX1Q15475 MIR598-201ENST00000384868 97 ntBASIC0.72□□□□□ -2.29
SIX1Q15475 MIR1827-201ENST00000408549 66 ntBASIC0.72□□□□□ -2.29
SIX1Q15475 MTND5P15-201ENST00000434246 349 ntBASIC0.72□□□□□ -2.29
SIX1Q15475 U7.7-201ENST00000459276 60 ntBASIC0.72□□□□□ -2.29
SIX1Q15475 snoU13.21-201ENST00000459368 105 ntBASIC0.72□□□□□ -2.29
SIX1Q15475 RNU6-1110P-201ENST00000516462 101 ntBASIC0.72□□□□□ -2.29
SIX1Q15475 MIR6740-201ENST00000618268 113 ntBASIC0.72□□□□□ -2.29
SIX1Q15475 MIR6866-201ENST00000638146 69 ntBASIC0.72□□□□□ -2.29
SIX1Q15475 CCDC14-221ENST00000489746 6476 ntAPPRIS ALT2 TSL 1 (best) BASIC0.71□□□□□ -2.3
SIX1Q15475 RNU6-818P-201ENST00000364837 108 ntBASIC0.71□□□□□ -2.3
SIX1Q15475 RNU1-36P-201ENST00000365130 165 ntBASIC0.71□□□□□ -2.3
SIX1Q15475 RNU6-1318P-201ENST00000365389 103 ntBASIC0.71□□□□□ -2.3
SIX1Q15475 RNU6ATAC33P-201ENST00000408647 126 ntBASIC0.71□□□□□ -2.3
SIX1Q15475 RNU6-1135P-201ENST00000411083 103 ntBASIC0.71□□□□□ -2.3
SIX1Q15475 AC073127.1-201ENST00000447336 333 ntTSL 3 BASIC0.71□□□□□ -2.3
SIX1Q15475 snoU13.2-201ENST00000459201 104 ntBASIC0.71□□□□□ -2.3
SIX1Q15475 RNA5SP236-201ENST00000516169 116 ntBASIC0.71□□□□□ -2.3
SIX1Q15475 MIR3152-201ENST00000579801 74 ntBASIC0.71□□□□□ -2.3
SIX1Q15475 AC092071.1-201ENST00000597260 549 ntTSL 5 BASIC0.71□□□□□ -2.3
SIX1Q15475 uc_338.6-201ENST00000613544 171 ntBASIC0.71□□□□□ -2.3
SIX1Q15475 AC021613.1-201ENST00000623880 111 ntBASIC0.71□□□□□ -2.3
SIX1Q15475 MIR6844-201ENST00000637122 62 ntBASIC0.71□□□□□ -2.3
SIX1Q15475 MIR6841-201ENST00000637129 72 ntBASIC0.71□□□□□ -2.3
SIX1Q15475 RNU6-369P-201ENST00000362515 102 ntBASIC0.7□□□□□ -2.3
SIX1Q15475 MIR588-201ENST00000384900 83 ntBASIC0.7□□□□□ -2.3
SIX1Q15475 MIR563-201ENST00000385080 79 ntBASIC0.7□□□□□ -2.3
SIX1Q15475 SNORD12C-201ENST00000386307 89 ntBASIC0.7□□□□□ -2.3
SIX1Q15475 SNORD89-201ENST00000390981 114 ntBASIC0.7□□□□□ -2.3
SIX1Q15475 RNU6-182P-201ENST00000516970 105 ntBASIC0.7□□□□□ -2.3
SIX1Q15475 AC087277.2-201ENST00000533203 151 ntTSL 5 BASIC0.7□□□□□ -2.3
SIX1Q15475 DNAJC19P2-201ENST00000593340 302 ntBASIC0.7□□□□□ -2.3
SIX1Q15475 AC090425.1-201ENST00000610007 140 ntBASIC0.7□□□□□ -2.3
SIX1Q15475 AL136317.1-201ENST00000612653 226 ntBASIC0.7□□□□□ -2.3
SIX1Q15475 CLRN1-AS1.1-201ENST00000615643 79 ntBASIC0.7□□□□□ -2.3
SIX1Q15475 MIR3658-201ENST00000636291 56 ntBASIC0.7□□□□□ -2.3
SIX1Q15475 MIR1-1-201ENST00000362147 71 ntBASIC0.69□□□□□ -2.3
SIX1Q15475 Y_RNA.272-201ENST00000364696 102 ntBASIC0.69□□□□□ -2.3
SIX1Q15475 RNU6-934P-201ENST00000365154 107 ntBASIC0.69□□□□□ -2.3
SIX1Q15475 RNU6-1335P-201ENST00000365426 107 ntBASIC0.69□□□□□ -2.3
SIX1Q15475 Y_RNA.466-201ENST00000384294 113 ntBASIC0.69□□□□□ -2.3
SIX1Q15475 Y_RNA.497-201ENST00000384447 98 ntBASIC0.69□□□□□ -2.3
SIX1Q15475 SNORA20-201ENST00000384662 132 ntBASIC0.69□□□□□ -2.3
SIX1Q15475 RNU6-1165P-201ENST00000410119 107 ntBASIC0.69□□□□□ -2.3
SIX1Q15475 SNORD83.1-201ENST00000411362 77 ntBASIC0.69□□□□□ -2.3
SIX1Q15475 RPS26P5-201ENST00000418544 335 ntBASIC0.69□□□□□ -2.3
SIX1Q15475 AC074198.2-201ENST00000508153 258 ntBASIC0.69□□□□□ -2.3
SIX1Q15475 RNU6-794P-201ENST00000517261 64 ntBASIC0.69□□□□□ -2.3
SIX1Q15475 AC133485.1-201ENST00000567176 124 ntBASIC0.69□□□□□ -2.3
SIX1Q15475 AC138907.6-201ENST00000568401 126 ntBASIC0.69□□□□□ -2.3
SIX1Q15475 AC079466.2-201ENST00000585394 185 ntTSL 5 BASIC0.69□□□□□ -2.3
SIX1Q15475 MIR6835-201ENST00000621552 64 ntBASIC0.69□□□□□ -2.3
SIX1Q15475 AC010332.2-201ENST00000613083 1904 ntBASIC0.68□□□□□ -2.3
SIX1Q15475 SNORA22.1-201ENST00000362701 134 ntBASIC0.68□□□□□ -2.3
SIX1Q15475 RNY1P6-201ENST00000384193 109 ntBASIC0.68□□□□□ -2.3
SIX1Q15475 MIR100-201ENST00000385259 80 ntBASIC0.68□□□□□ -2.3
SIX1Q15475 RNU6ATAC6P-201ENST00000408132 126 ntBASIC0.68□□□□□ -2.3
SIX1Q15475 RNU6-588P-201ENST00000410281 105 ntBASIC0.68□□□□□ -2.3
SIX1Q15475 MIR18B-201ENST00000454574 71 ntBASIC0.68□□□□□ -2.3
SIX1Q15475 AC025627.3-201ENST00000582078 182 ntBASIC0.68□□□□□ -2.3
SIX1Q15475 FTX_2.1-201ENST00000618816 94 ntBASIC0.68□□□□□ -2.3
SIX1Q15475 TEX15-201ENST00000256246 10110 ntTSL 1 (best) BASIC0.67□□□□□ -2.3
SIX1Q15475 RNU6-349P-201ENST00000362402 107 ntBASIC0.67□□□□□ -2.3
SIX1Q15475 RNU4-16P-201ENST00000364737 141 ntBASIC0.67□□□□□ -2.3
SIX1Q15475 SNORD37.2-201ENST00000391075 66 ntBASIC0.67□□□□□ -2.3
SIX1Q15475 AC113410.1-201ENST00000505029 247 ntBASIC0.67□□□□□ -2.3
SIX1Q15475 ACA64.5-201ENST00000516207 127 ntBASIC0.67□□□□□ -2.3
SIX1Q15475 RNU2-60P-201ENST00000517290 128 ntBASIC0.67□□□□□ -2.3
SIX1Q15475 MIR4771-2-201ENST00000577758 74 ntBASIC0.67□□□□□ -2.3
SIX1Q15475 MIR4714-201ENST00000580728 77 ntBASIC0.67□□□□□ -2.3
SIX1Q15475 MIR4771-1-201ENST00000582617 74 ntBASIC0.67□□□□□ -2.3
SIX1Q15475 MIR4653-201ENST00000585107 83 ntBASIC0.67□□□□□ -2.3
SIX1Q15475 MIR30D-201ENST00000362283 70 ntBASIC0.66□□□□□ -2.3
SIX1Q15475 RNU6-342P-201ENST00000384521 104 ntBASIC0.66□□□□□ -2.3
SIX1Q15475 MIR608-201ENST00000384820 100 ntBASIC0.66□□□□□ -2.3
SIX1Q15475 SNORD105-201ENST00000386910 85 ntBASIC0.66□□□□□ -2.3
SIX1Q15475 MT-TF-201ENST00000387314 71 ntBASIC0.66□□□□□ -2.3
SIX1Q15475 RNU2-64P-201ENST00000411315 191 ntBASIC0.66□□□□□ -2.3
SIX1Q15475 AC015818.7-201ENST00000428754 109 ntBASIC0.66□□□□□ -2.3
SIX1Q15475 AC087499.7-201ENST00000441958 109 ntBASIC0.66□□□□□ -2.3
SIX1Q15475 RNU6-893P-201ENST00000458841 100 ntBASIC0.66□□□□□ -2.3
SIX1Q15475 AL590095.2-201ENST00000604136 117 ntBASIC0.66□□□□□ -2.3
SIX1Q15475 AL353765.1-201ENST00000605514 183 ntBASIC0.66□□□□□ -2.3
SIX1Q15475 PVT1_3.1-201ENST00000620853 95 ntBASIC0.66□□□□□ -2.3
SIX1Q15475 IST1-227ENST00000626438 126 ntTSL 5 BASIC0.66□□□□□ -2.3
SIX1Q15475 RNY1P11-201ENST00000363759 113 ntBASIC0.65□□□□□ -2.31
SIX1Q15475 Y_RNA.251-201ENST00000364551 99 ntBASIC0.65□□□□□ -2.31
SIX1Q15475 MIR508-201ENST00000384857 115 ntBASIC0.65□□□□□ -2.31
SIX1Q15475 PCNPP3-201ENST00000393579 471 ntBASIC0.65□□□□□ -2.31
SIX1Q15475 MTATP6P21-201ENST00000440681 189 ntBASIC0.65□□□□□ -2.31
SIX1Q15475 MIR3671-201ENST00000580455 88 ntBASIC0.65□□□□□ -2.31
SIX1Q15475 AC020891.4-201ENST00000605745 93 ntBASIC0.65□□□□□ -2.31
SIX1Q15475 AC011603.4-201ENST00000611325 277 ntBASIC0.65□□□□□ -2.31
SIX1Q15475 AL662814.1-201ENST00000617364 121 ntBASIC0.65□□□□□ -2.31
SIX1Q15475 HSBP1P2-201ENST00000299671 229 ntBASIC0.64□□□□□ -2.31
SIX1Q15475 MIR605-201ENST00000385078 83 ntBASIC0.64□□□□□ -2.31
SIX1Q15475 Y_RNA.580-201ENST00000391004 95 ntBASIC0.64□□□□□ -2.31
SIX1Q15475 SNORD99-201ENST00000408612 74 ntBASIC0.64□□□□□ -2.31
Retrieved 100 of 98,524 protein–RNA pairs in 188.8 ms