Protein–RNA interactions for Protein: P43246

MSH2, DNA mismatch repair protein Msh2, humanhuman

Predictions only

Length 934 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH2P43246 MIR3973-201ENST00000579824 107 ntBASIC0.8□□□□□ -2.28
MSH2P43246 MIR6841-201ENST00000637129 72 ntBASIC0.8□□□□□ -2.28
MSH2P43246 ANGPTL3-201ENST00000371129 2805 ntAPPRIS P1 TSL 1 (best) BASIC0.79□□□□□ -2.28
MSH2P43246 RNU6-682P-201ENST00000363843 106 ntBASIC0.79□□□□□ -2.28
MSH2P43246 Y_RNA.224-201ENST00000364308 111 ntBASIC0.79□□□□□ -2.28
MSH2P43246 MIR520E-201ENST00000384867 87 ntBASIC0.79□□□□□ -2.28
MSH2P43246 SNORA75.5-201ENST00000391291 81 ntBASIC0.79□□□□□ -2.28
MSH2P43246 RNU6ATAC27P-201ENST00000408289 119 ntBASIC0.79□□□□□ -2.28
MSH2P43246 SNORD99-201ENST00000408612 74 ntBASIC0.79□□□□□ -2.28
MSH2P43246 RNU5E-9P-201ENST00000411164 104 ntBASIC0.79□□□□□ -2.28
MSH2P43246 AC015818.7-201ENST00000428754 109 ntBASIC0.79□□□□□ -2.28
MSH2P43246 AC087499.7-201ENST00000441958 109 ntBASIC0.79□□□□□ -2.28
MSH2P43246 RNU7-121P-201ENST00000516604 62 ntBASIC0.79□□□□□ -2.28
MSH2P43246 RNU6-861P-201ENST00000516745 106 ntBASIC0.79□□□□□ -2.28
MSH2P43246 CLRN1-AS1.1-201ENST00000615643 79 ntBASIC0.79□□□□□ -2.28
MSH2P43246 RNU6-818P-201ENST00000364837 108 ntBASIC0.78□□□□□ -2.28
MSH2P43246 RNU6-977P-201ENST00000516411 103 ntBASIC0.78□□□□□ -2.28
MSH2P43246 AC107958.3-201ENST00000553410 431 ntTSL 3 BASIC0.78□□□□□ -2.28
MSH2P43246 MIR3646-201ENST00000578301 84 ntBASIC0.78□□□□□ -2.28
MSH2P43246 AC020891.4-201ENST00000605745 93 ntBASIC0.78□□□□□ -2.28
MSH2P43246 AC004792.1-201ENST00000614523 137 ntBASIC0.78□□□□□ -2.28
MSH2P43246 RMST_2.1-201ENST00000617263 136 ntBASIC0.78□□□□□ -2.28
MSH2P43246 MIR6844-201ENST00000637122 62 ntBASIC0.78□□□□□ -2.28
MSH2P43246 MIR6866-201ENST00000638146 69 ntBASIC0.78□□□□□ -2.28
MSH2P43246 HSBP1P2-201ENST00000299671 229 ntBASIC0.77□□□□□ -2.29
MSH2P43246 MIR30D-201ENST00000362283 70 ntBASIC0.77□□□□□ -2.29
MSH2P43246 SNORA22.1-201ENST00000362701 134 ntBASIC0.77□□□□□ -2.29
MSH2P43246 Y_RNA.226-201ENST00000364337 114 ntBASIC0.77□□□□□ -2.29
MSH2P43246 MIR1287-201ENST00000408492 90 ntBASIC0.77□□□□□ -2.29
MSH2P43246 RNA5SP247-201ENST00000411181 105 ntBASIC0.77□□□□□ -2.29
MSH2P43246 Y_RNA.662-201ENST00000516028 97 ntBASIC0.77□□□□□ -2.29
MSH2P43246 RNA5SP236-201ENST00000516169 116 ntBASIC0.77□□□□□ -2.29
MSH2P43246 MIR4676-201ENST00000583078 72 ntBASIC0.77□□□□□ -2.29
MSH2P43246 AC079466.2-201ENST00000585394 185 ntTSL 5 BASIC0.77□□□□□ -2.29
MSH2P43246 SENP7-207ENST00000394095 4945 ntAPPRIS P3 TSL 1 (best) BASIC0.77□□□□□ -2.29
MSH2P43246 RNU4-16P-201ENST00000364737 141 ntBASIC0.76□□□□□ -2.29
MSH2P43246 RNU6-1318P-201ENST00000365389 103 ntBASIC0.76□□□□□ -2.29
MSH2P43246 IL6ST-202ENST00000381286 201 ntTSL 1 (best) BASIC0.76□□□□□ -2.29
MSH2P43246 Y_RNA.441-201ENST00000384123 112 ntBASIC0.76□□□□□ -2.29
MSH2P43246 RNY1P6-201ENST00000384193 109 ntBASIC0.76□□□□□ -2.29
MSH2P43246 MT-TF-201ENST00000387314 71 ntBASIC0.76□□□□□ -2.29
MSH2P43246 MTND5P15-201ENST00000434246 349 ntBASIC0.76□□□□□ -2.29
MSH2P43246 AC012668.1-201ENST00000457625 228 ntTSL 3 BASIC0.76□□□□□ -2.29
MSH2P43246 RPS29P1-201ENST00000465274 159 ntBASIC0.76□□□□□ -2.29
MSH2P43246 MIR4804-201ENST00000581683 73 ntBASIC0.76□□□□□ -2.29
MSH2P43246 MIR373-201ENST00000362273 69 ntBASIC0.75□□□□□ -2.29
MSH2P43246 Y_RNA.497-201ENST00000384447 98 ntBASIC0.75□□□□□ -2.29
MSH2P43246 RNU6-110P-201ENST00000384508 104 ntBASIC0.75□□□□□ -2.29
MSH2P43246 MIR520F-201ENST00000384824 87 ntBASIC0.75□□□□□ -2.29
MSH2P43246 RNU6ATAC31P-201ENST00000408513 126 ntBASIC0.75□□□□□ -2.29
MSH2P43246 RNU6-588P-201ENST00000410281 105 ntBASIC0.75□□□□□ -2.29
MSH2P43246 RNU6-893P-201ENST00000458841 100 ntBASIC0.75□□□□□ -2.29
MSH2P43246 DNAJC19P2-201ENST00000593340 302 ntBASIC0.75□□□□□ -2.29
MSH2P43246 MIR3658-201ENST00000636291 56 ntBASIC0.75□□□□□ -2.29
MSH2P43246 RNU6-349P-201ENST00000362402 107 ntBASIC0.74□□□□□ -2.29
MSH2P43246 RNA5SP237-201ENST00000410414 113 ntBASIC0.74□□□□□ -2.29
MSH2P43246 RNU6-1135P-201ENST00000411083 103 ntBASIC0.74□□□□□ -2.29
MSH2P43246 AC244098.3-201ENST00000424803 96 ntBASIC0.74□□□□□ -2.29
MSH2P43246 AC004941.2-201ENST00000427009 228 ntBASIC0.74□□□□□ -2.29
MSH2P43246 RNU7-185P-201ENST00000459215 60 ntBASIC0.74□□□□□ -2.29
MSH2P43246 COX6CP6-201ENST00000490840 228 ntBASIC0.74□□□□□ -2.29
MSH2P43246 RNU6-1237P-201ENST00000384777 107 ntBASIC0.73□□□□□ -2.29
MSH2P43246 MIR520H-201ENST00000385126 88 ntBASIC0.73□□□□□ -2.29
MSH2P43246 RNU1-119P-201ENST00000391122 165 ntBASIC0.73□□□□□ -2.29
MSH2P43246 MIR1257-201ENST00000408490 117 ntBASIC0.73□□□□□ -2.29
MSH2P43246 RNU7-56P-201ENST00000458744 62 ntBASIC0.73□□□□□ -2.29
MSH2P43246 AC011195.1-201ENST00000578177 177 ntBASIC0.73□□□□□ -2.29
MSH2P43246 AL078603.1-201ENST00000603824 313 ntBASIC0.73□□□□□ -2.29
MSH2P43246 5S_rRNA.15-201ENST00000611169 127 ntBASIC0.73□□□□□ -2.29
MSH2P43246 AL662814.1-201ENST00000617364 121 ntBASIC0.73□□□□□ -2.29
MSH2P43246 Y_RNA.272-201ENST00000364696 102 ntBASIC0.72□□□□□ -2.29
MSH2P43246 MIR125B2-201ENST00000385128 89 ntBASIC0.72□□□□□ -2.29
MSH2P43246 SNORD37.2-201ENST00000391075 66 ntBASIC0.72□□□□□ -2.29
MSH2P43246 MIR938-201ENST00000401216 83 ntBASIC0.72□□□□□ -2.29
MSH2P43246 AC074198.2-201ENST00000508153 258 ntBASIC0.72□□□□□ -2.29
MSH2P43246 Y_RNA.757-201ENST00000578934 114 ntBASIC0.72□□□□□ -2.29
MSH2P43246 RNA5SP144-201ENST00000410846 116 ntBASIC0.71□□□□□ -2.3
MSH2P43246 MTATP6P21-201ENST00000440681 189 ntBASIC0.71□□□□□ -2.3
MSH2P43246 RNU6-1258P-201ENST00000516911 111 ntBASIC0.71□□□□□ -2.3
MSH2P43246 RNU6-182P-201ENST00000516970 105 ntBASIC0.71□□□□□ -2.3
MSH2P43246 RNU2-60P-201ENST00000517290 128 ntBASIC0.71□□□□□ -2.3
MSH2P43246 SNORA4-201ENST00000584302 138 ntBASIC0.71□□□□□ -2.3
MSH2P43246 AC011603.4-201ENST00000611325 277 ntBASIC0.71□□□□□ -2.3
MSH2P43246 RNY1P11-201ENST00000363759 113 ntBASIC0.7□□□□□ -2.3
MSH2P43246 MIR573-201ENST00000384964 99 ntBASIC0.7□□□□□ -2.3
MSH2P43246 RNU6ATAC42P-201ENST00000408637 95 ntBASIC0.7□□□□□ -2.3
MSH2P43246 RNA5SP220-201ENST00000516298 104 ntBASIC0.7□□□□□ -2.3
MSH2P43246 AC141846.1-201ENST00000568348 142 ntBASIC0.7□□□□□ -2.3
MSH2P43246 MIR6835-201ENST00000621552 64 ntBASIC0.7□□□□□ -2.3
MSH2P43246 OMD-201ENST00000375550 2449 ntAPPRIS P1 TSL 1 (best) BASIC0.69□□□□□ -2.3
MSH2P43246 CCDC73-201ENST00000335185 3849 ntAPPRIS P2 TSL 2 BASIC0.69□□□□□ -2.3
MSH2P43246 Y_RNA.171-201ENST00000363760 102 ntBASIC0.69□□□□□ -2.3
MSH2P43246 RPS27-201ENST00000368567 350 ntAPPRIS P1 TSL 1 (best) BASIC0.69□□□□□ -2.3
MSH2P43246 RNU6-364P-201ENST00000384387 107 ntBASIC0.69□□□□□ -2.3
MSH2P43246 SNORA18-201ENST00000384416 132 ntBASIC0.69□□□□□ -2.3
MSH2P43246 Y_RNA.584-201ENST00000391090 114 ntBASIC0.69□□□□□ -2.3
MSH2P43246 MIR548J-201ENST00000408833 112 ntBASIC0.69□□□□□ -2.3
MSH2P43246 RNU7-156P-201ENST00000517214 74 ntBASIC0.69□□□□□ -2.3
MSH2P43246 CYP3A137P-201ENST00000562436 69 ntBASIC0.69□□□□□ -2.3
MSH2P43246 MIR151B-201ENST00000584249 96 ntBASIC0.69□□□□□ -2.3
Retrieved 100 of 98,524 protein–RNA pairs in 336.2 ms