Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 AC092071.1-201ENST00000597260 549 ntTSL 5 BASIC0.94□□□□□ -2.26
HNF4AP41235 AC021613.1-201ENST00000623880 111 ntBASIC0.94□□□□□ -2.26
HNF4AP41235 AP001340.1-201ENST00000624405 217 ntBASIC0.94□□□□□ -2.26
HNF4AP41235 EYS-205ENST00000393380 5450 ntTSL 1 (best) BASIC0.93□□□□□ -2.26
HNF4AP41235 MIR337-201ENST00000362281 93 ntBASIC0.93□□□□□ -2.26
HNF4AP41235 RNY1P10-201ENST00000363268 113 ntBASIC0.93□□□□□ -2.26
HNF4AP41235 SNORA1.1-201ENST00000364671 133 ntBASIC0.93□□□□□ -2.26
HNF4AP41235 Y_RNA.294-201ENST00000364916 102 ntBASIC0.93□□□□□ -2.26
HNF4AP41235 Y_RNA.330-201ENST00000365230 109 ntBASIC0.93□□□□□ -2.26
HNF4AP41235 RNU6-396P-201ENST00000365369 105 ntBASIC0.93□□□□□ -2.26
HNF4AP41235 RNY1P6-201ENST00000384193 109 ntBASIC0.93□□□□□ -2.26
HNF4AP41235 RNA5SP95-201ENST00000410319 137 ntBASIC0.93□□□□□ -2.26
HNF4AP41235 DIP2A-IT1-201ENST00000442434 428 ntTSL 2 BASIC0.93□□□□□ -2.26
HNF4AP41235 AP001328.1-201ENST00000528550 176 ntBASIC0.93□□□□□ -2.26
HNF4AP41235 SEPT14P17-201ENST00000617978 177 ntBASIC0.93□□□□□ -2.26
HNF4AP41235 AC010332.2-201ENST00000613083 1904 ntBASIC0.93□□□□□ -2.26
HNF4AP41235 Y_RNA.343-201ENST00000365354 112 ntBASIC0.92□□□□□ -2.26
HNF4AP41235 RNU6-257P-201ENST00000410238 98 ntBASIC0.92□□□□□ -2.26
HNF4AP41235 RPS3AP1-201ENST00000413190 320 ntBASIC0.92□□□□□ -2.26
HNF4AP41235 MTND4LP9-201ENST00000427694 174 ntBASIC0.92□□□□□ -2.26
HNF4AP41235 SUMO1P3-201ENST00000439961 304 ntBASIC0.92□□□□□ -2.26
HNF4AP41235 MTATP6P21-201ENST00000440681 189 ntBASIC0.92□□□□□ -2.26
HNF4AP41235 RNU5E-3P-201ENST00000515913 68 ntBASIC0.92□□□□□ -2.26
HNF4AP41235 RNU6-240P-201ENST00000516098 97 ntBASIC0.92□□□□□ -2.26
HNF4AP41235 RNU6-1258P-201ENST00000516911 111 ntBASIC0.92□□□□□ -2.26
HNF4AP41235 AC108081.1-201ENST00000604358 221 ntBASIC0.92□□□□□ -2.26
HNF4AP41235 SNORD38B-201ENST00000384690 67 ntBASIC0.91□□□□□ -2.26
HNF4AP41235 SNORD12C-201ENST00000386307 89 ntBASIC0.91□□□□□ -2.26
HNF4AP41235 MIR548M-201ENST00000408260 86 ntBASIC0.91□□□□□ -2.26
HNF4AP41235 RNU6-613P-201ENST00000410412 108 ntBASIC0.91□□□□□ -2.26
HNF4AP41235 AC013248.1-201ENST00000455092 232 ntTSL 3 BASIC0.91□□□□□ -2.26
HNF4AP41235 MIR2115-201ENST00000516657 100 ntBASIC0.91□□□□□ -2.26
HNF4AP41235 RNA5SP102-201ENST00000516865 106 ntBASIC0.91□□□□□ -2.26
HNF4AP41235 AC004148.1-201ENST00000571506 398 ntTSL 5 BASIC0.91□□□□□ -2.26
HNF4AP41235 MIR3152-201ENST00000579801 74 ntBASIC0.91□□□□□ -2.26
HNF4AP41235 SNORD38B-202ENST00000625943 69 ntBASIC0.91□□□□□ -2.26
HNF4AP41235 MIR6841-201ENST00000637129 72 ntBASIC0.91□□□□□ -2.26
HNF4AP41235 Y_RNA.4-201ENST00000362333 112 ntBASIC0.9□□□□□ -2.27
HNF4AP41235 RNU6-690P-201ENST00000365242 106 ntBASIC0.9□□□□□ -2.27
HNF4AP41235 Y_RNA.430-201ENST00000384081 110 ntBASIC0.9□□□□□ -2.27
HNF4AP41235 MIR608-201ENST00000384820 100 ntBASIC0.9□□□□□ -2.27
HNF4AP41235 RNU6-205P-201ENST00000390858 107 ntBASIC0.9□□□□□ -2.27
HNF4AP41235 FABP5P4-201ENST00000437203 171 ntBASIC0.9□□□□□ -2.27
HNF4AP41235 PSMC1P5-201ENST00000512850 177 ntBASIC0.9□□□□□ -2.27
HNF4AP41235 Y_RNA.692-201ENST00000516627 105 ntBASIC0.9□□□□□ -2.27
HNF4AP41235 AC036111.3-201ENST00000526389 112 ntBASIC0.9□□□□□ -2.27
HNF4AP41235 AC023827.1-201ENST00000569247 97 ntBASIC0.9□□□□□ -2.27
HNF4AP41235 AC011603.4-201ENST00000611325 277 ntBASIC0.9□□□□□ -2.27
HNF4AP41235 MIR96-201ENST00000362288 78 ntBASIC0.89□□□□□ -2.27
HNF4AP41235 SNORA22.1-201ENST00000362701 134 ntBASIC0.89□□□□□ -2.27
HNF4AP41235 Y_RNA.114-201ENST00000363265 113 ntBASIC0.89□□□□□ -2.27
HNF4AP41235 Y_RNA.171-201ENST00000363760 102 ntBASIC0.89□□□□□ -2.27
HNF4AP41235 RNU6-580P-201ENST00000365159 107 ntBASIC0.89□□□□□ -2.27
HNF4AP41235 Y_RNA.366-201ENST00000365540 102 ntBASIC0.89□□□□□ -2.27
HNF4AP41235 RNA5SP261-201ENST00000410536 106 ntBASIC0.89□□□□□ -2.27
HNF4AP41235 RNA5SP144-201ENST00000410846 116 ntBASIC0.89□□□□□ -2.27
HNF4AP41235 AC073127.1-201ENST00000447336 333 ntTSL 3 BASIC0.89□□□□□ -2.27
HNF4AP41235 RNU2-35P-201ENST00000516446 142 ntBASIC0.89□□□□□ -2.27
HNF4AP41235 IGKV1-22-201ENST00000524313 326 ntBASIC0.89□□□□□ -2.27
HNF4AP41235 Y_RNA.757-201ENST00000578934 114 ntBASIC0.89□□□□□ -2.27
HNF4AP41235 Y_RNA.280-201ENST00000364765 112 ntBASIC0.88□□□□□ -2.27
HNF4AP41235 MIR532-201ENST00000385025 91 ntBASIC0.88□□□□□ -2.27
HNF4AP41235 MIR613-201ENST00000385248 95 ntBASIC0.88□□□□□ -2.27
HNF4AP41235 MT-TN-201ENST00000387400 73 ntBASIC0.88□□□□□ -2.27
HNF4AP41235 SNORA40-201ENST00000388090 126 ntBASIC0.88□□□□□ -2.27
HNF4AP41235 Y_RNA.586-201ENST00000391146 98 ntBASIC0.88□□□□□ -2.27
HNF4AP41235 AL512326.2-201ENST00000426359 151 ntBASIC0.88□□□□□ -2.27
HNF4AP41235 RNA5SP255-201ENST00000516370 107 ntBASIC0.88□□□□□ -2.27
HNF4AP41235 RNU6-113P-201ENST00000516653 101 ntBASIC0.88□□□□□ -2.27
HNF4AP41235 AC133485.4-201ENST00000561835 220 ntBASIC0.88□□□□□ -2.27
HNF4AP41235 AC138907.4-201ENST00000570107 226 ntBASIC0.88□□□□□ -2.27
HNF4AP41235 MIR4698-201ENST00000577795 80 ntBASIC0.88□□□□□ -2.27
HNF4AP41235 MIR4305-201ENST00000583252 102 ntBASIC0.88□□□□□ -2.27
HNF4AP41235 uc_338.6-201ENST00000613544 171 ntBASIC0.88□□□□□ -2.27
HNF4AP41235 MIR6740-201ENST00000618268 113 ntBASIC0.88□□□□□ -2.27
HNF4AP41235 RNU6-704P-201ENST00000364162 103 ntBASIC0.87□□□□□ -2.27
HNF4AP41235 SNORD113.3-201ENST00000364630 78 ntBASIC0.87□□□□□ -2.27
HNF4AP41235 SNORD50.2-201ENST00000365465 70 ntBASIC0.87□□□□□ -2.27
HNF4AP41235 SNORA2B-201ENST00000384583 137 ntBASIC0.87□□□□□ -2.27
HNF4AP41235 snoU13.21-201ENST00000459368 105 ntBASIC0.87□□□□□ -2.27
HNF4AP41235 MIR4264-201ENST00000583520 66 ntBASIC0.87□□□□□ -2.27
HNF4AP41235 MIR4653-201ENST00000585107 83 ntBASIC0.87□□□□□ -2.27
HNF4AP41235 AP000753.3-201ENST00000604083 169 ntBASIC0.87□□□□□ -2.27
HNF4AP41235 AC021443.1-201ENST00000604478 211 ntBASIC0.87□□□□□ -2.27
HNF4AP41235 U7.2-201ENST00000607576 63 ntBASIC0.87□□□□□ -2.27
HNF4AP41235 HOTAIRM1_4.1-201ENST00000617934 102 ntBASIC0.87□□□□□ -2.27
HNF4AP41235 TEX15-201ENST00000256246 10110 ntTSL 1 (best) BASIC0.86□□□□□ -2.27
HNF4AP41235 Y_RNA.168-201ENST00000363740 102 ntBASIC0.86□□□□□ -2.27
HNF4AP41235 Y_RNA.354-201ENST00000365448 111 ntBASIC0.86□□□□□ -2.27
HNF4AP41235 Y_RNA.470-201ENST00000384307 117 ntBASIC0.86□□□□□ -2.27
HNF4AP41235 MIR588-201ENST00000384900 83 ntBASIC0.86□□□□□ -2.27
HNF4AP41235 AL158147.1-201ENST00000443970 75 ntBASIC0.86□□□□□ -2.27
HNF4AP41235 snoU13.2-201ENST00000459201 104 ntBASIC0.86□□□□□ -2.27
HNF4AP41235 MIR6857-201ENST00000613267 93 ntBASIC0.86□□□□□ -2.27
HNF4AP41235 AC106800.4-201ENST00000614905 153 ntBASIC0.86□□□□□ -2.27
HNF4AP41235 AL137067.1-201ENST00000615933 120 ntBASIC0.86□□□□□ -2.27
HNF4AP41235 TUG1_4.1-201ENST00000619464 181 ntBASIC0.86□□□□□ -2.27
HNF4AP41235 MIR377-201ENST00000362145 69 ntBASIC0.85□□□□□ -2.27
HNF4AP41235 RNU6-235P-201ENST00000362644 107 ntBASIC0.85□□□□□ -2.27
HNF4AP41235 RNU6-1237P-201ENST00000384777 107 ntBASIC0.85□□□□□ -2.27
Retrieved 100 of 98,524 protein–RNA pairs in 38.8 ms