Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 RNU6-151P-201ENST00000364158 107 ntBASIC0.8□□□□□ -2.28
SOX3P41225 RNU6-205P-201ENST00000390858 107 ntBASIC0.8□□□□□ -2.28
SOX3P41225 SNORA75.5-201ENST00000391291 81 ntBASIC0.8□□□□□ -2.28
SOX3P41225 RNA5SP261-201ENST00000410536 106 ntBASIC0.8□□□□□ -2.28
SOX3P41225 Y_RNA.651-201ENST00000459380 103 ntBASIC0.8□□□□□ -2.28
SOX3P41225 RPL39P28-201ENST00000465655 155 ntBASIC0.8□□□□□ -2.28
SOX3P41225 RNU6-1258P-201ENST00000516911 111 ntBASIC0.8□□□□□ -2.28
SOX3P41225 AC010177.1-201ENST00000547819 366 ntTSL 3 BASIC0.8□□□□□ -2.28
SOX3P41225 AC004148.1-201ENST00000571506 398 ntTSL 5 BASIC0.8□□□□□ -2.28
SOX3P41225 AC013244.2-201ENST00000603396 103 ntBASIC0.8□□□□□ -2.28
SOX3P41225 RNU6-94P-201ENST00000607728 107 ntBASIC0.8□□□□□ -2.28
SOX3P41225 DLEU2_5.2-201ENST00000610606 84 ntBASIC0.8□□□□□ -2.28
SOX3P41225 RNU6-349P-201ENST00000362402 107 ntBASIC0.79□□□□□ -2.28
SOX3P41225 RNU4-16P-201ENST00000364737 141 ntBASIC0.79□□□□□ -2.28
SOX3P41225 Y_RNA.506-201ENST00000384494 102 ntBASIC0.79□□□□□ -2.28
SOX3P41225 RNU6-1319P-201ENST00000390855 104 ntBASIC0.79□□□□□ -2.28
SOX3P41225 RNU6-747P-201ENST00000390928 104 ntBASIC0.79□□□□□ -2.28
SOX3P41225 RNU6-241P-201ENST00000391148 104 ntBASIC0.79□□□□□ -2.28
SOX3P41225 RNU6-460P-201ENST00000391158 108 ntBASIC0.79□□□□□ -2.28
SOX3P41225 RNU6-177P-201ENST00000411257 104 ntBASIC0.79□□□□□ -2.28
SOX3P41225 U7.7-201ENST00000459276 60 ntBASIC0.79□□□□□ -2.28
SOX3P41225 PDCD5P2-201ENST00000507570 312 ntBASIC0.79□□□□□ -2.28
SOX3P41225 RNA5SP255-201ENST00000516370 107 ntBASIC0.79□□□□□ -2.28
SOX3P41225 FAM71BP1-201ENST00000604431 523 ntBASIC0.79□□□□□ -2.28
SOX3P41225 MIR6740-201ENST00000618268 113 ntBASIC0.79□□□□□ -2.28
SOX3P41225 Y_RNA.778-201ENST00000620203 90 ntBASIC0.79□□□□□ -2.28
SOX3P41225 RNU6-369P-201ENST00000362515 102 ntBASIC0.78□□□□□ -2.28
SOX3P41225 RNU6-309P-201ENST00000364573 106 ntBASIC0.78□□□□□ -2.28
SOX3P41225 RNU1-133P-201ENST00000364867 167 ntBASIC0.78□□□□□ -2.28
SOX3P41225 Y_RNA.354-201ENST00000365448 111 ntBASIC0.78□□□□□ -2.28
SOX3P41225 Y_RNA.430-201ENST00000384081 110 ntBASIC0.78□□□□□ -2.28
SOX3P41225 SNORA20-201ENST00000384662 132 ntBASIC0.78□□□□□ -2.28
SOX3P41225 SNORD12C-201ENST00000386307 89 ntBASIC0.78□□□□□ -2.28
SOX3P41225 RPS3AP1-201ENST00000413190 320 ntBASIC0.78□□□□□ -2.28
SOX3P41225 RNU6-346P-201ENST00000516288 111 ntBASIC0.78□□□□□ -2.28
SOX3P41225 RNU7-70P-201ENST00000516941 66 ntBASIC0.78□□□□□ -2.28
SOX3P41225 RNU6-1212P-201ENST00000517023 104 ntBASIC0.78□□□□□ -2.28
SOX3P41225 AC112693.2-201ENST00000556538 232 ntBASIC0.78□□□□□ -2.28
SOX3P41225 MIR3646-201ENST00000578301 84 ntBASIC0.78□□□□□ -2.28
SOX3P41225 MIR3152-201ENST00000579801 74 ntBASIC0.78□□□□□ -2.28
SOX3P41225 AL078603.1-201ENST00000603824 313 ntBASIC0.78□□□□□ -2.28
SOX3P41225 CCDC14-221ENST00000489746 6476 ntAPPRIS ALT2 TSL 1 (best) BASIC0.78□□□□□ -2.28
SOX3P41225 AC108866.1-201ENST00000503073 2339 ntTSL 5 BASIC0.77□□□□□ -2.29
SOX3P41225 SNORD114-2-201ENST00000363953 78 ntBASIC0.77□□□□□ -2.29
SOX3P41225 RNU6-994P-201ENST00000410507 111 ntBASIC0.77□□□□□ -2.29
SOX3P41225 POLR2J4-204ENST00000418424 324 ntBASIC0.77□□□□□ -2.29
SOX3P41225 AC015818.7-201ENST00000428754 109 ntBASIC0.77□□□□□ -2.29
SOX3P41225 AC087499.7-201ENST00000441958 109 ntBASIC0.77□□□□□ -2.29
SOX3P41225 AC073127.1-201ENST00000447336 333 ntTSL 3 BASIC0.77□□□□□ -2.29
SOX3P41225 AC067940.1-201ENST00000458411 300 ntBASIC0.77□□□□□ -2.29
SOX3P41225 snoU13.2-201ENST00000459201 104 ntBASIC0.77□□□□□ -2.29
SOX3P41225 RNU6-1110P-201ENST00000516462 101 ntBASIC0.77□□□□□ -2.29
SOX3P41225 AC108081.1-201ENST00000604358 221 ntBASIC0.77□□□□□ -2.29
SOX3P41225 MIR6788-201ENST00000618842 66 ntBASIC0.77□□□□□ -2.29
SOX3P41225 MIR6841-201ENST00000637129 72 ntBASIC0.77□□□□□ -2.29
SOX3P41225 RNU1-36P-201ENST00000365130 165 ntBASIC0.76□□□□□ -2.29
SOX3P41225 RNU6-449P-201ENST00000383914 107 ntBASIC0.76□□□□□ -2.29
SOX3P41225 RNU6-209P-201ENST00000384118 107 ntBASIC0.76□□□□□ -2.29
SOX3P41225 Y_RNA.464-201ENST00000384282 110 ntBASIC0.76□□□□□ -2.29
SOX3P41225 MIR569-201ENST00000385228 96 ntBASIC0.76□□□□□ -2.29
SOX3P41225 MIR518E-201ENST00000385252 88 ntBASIC0.76□□□□□ -2.29
SOX3P41225 SNORD37.2-201ENST00000391075 66 ntBASIC0.76□□□□□ -2.29
SOX3P41225 RNU6ATAC33P-201ENST00000408647 126 ntBASIC0.76□□□□□ -2.29
SOX3P41225 MIR548J-201ENST00000408833 112 ntBASIC0.76□□□□□ -2.29
SOX3P41225 RNU7-62P-201ENST00000458856 62 ntBASIC0.76□□□□□ -2.29
SOX3P41225 RNU7-200P-201ENST00000516105 62 ntBASIC0.76□□□□□ -2.29
SOX3P41225 SNORA25.12-201ENST00000516202 82 ntBASIC0.76□□□□□ -2.29
SOX3P41225 AC025627.3-201ENST00000582078 182 ntBASIC0.76□□□□□ -2.29
SOX3P41225 AC092071.1-201ENST00000597260 549 ntTSL 5 BASIC0.76□□□□□ -2.29
SOX3P41225 AC021613.1-201ENST00000623880 111 ntBASIC0.76□□□□□ -2.29
SOX3P41225 MIR1-1-201ENST00000362147 71 ntBASIC0.75□□□□□ -2.29
SOX3P41225 Y_RNA.294-201ENST00000364916 102 ntBASIC0.75□□□□□ -2.29
SOX3P41225 RNU6-934P-201ENST00000365154 107 ntBASIC0.75□□□□□ -2.29
SOX3P41225 RNU6-1335P-201ENST00000365426 107 ntBASIC0.75□□□□□ -2.29
SOX3P41225 MIR588-201ENST00000384900 83 ntBASIC0.75□□□□□ -2.29
SOX3P41225 MIR146A-201ENST00000385201 99 ntBASIC0.75□□□□□ -2.29
SOX3P41225 SNORD89-201ENST00000390981 114 ntBASIC0.75□□□□□ -2.29
SOX3P41225 MIR1827-201ENST00000408549 66 ntBASIC0.75□□□□□ -2.29
SOX3P41225 IGKV1-22-201ENST00000524313 326 ntBASIC0.75□□□□□ -2.29
SOX3P41225 MIR151B-201ENST00000584249 96 ntBASIC0.75□□□□□ -2.29
SOX3P41225 SNORA4-201ENST00000584302 138 ntBASIC0.75□□□□□ -2.29
SOX3P41225 AL136317.1-201ENST00000612653 226 ntBASIC0.75□□□□□ -2.29
SOX3P41225 Y_RNA.171-201ENST00000363760 102 ntBASIC0.74□□□□□ -2.29
SOX3P41225 Y_RNA.215-201ENST00000364204 112 ntBASIC0.74□□□□□ -2.29
SOX3P41225 Y_RNA.400-201ENST00000383963 111 ntBASIC0.74□□□□□ -2.29
SOX3P41225 MIR563-201ENST00000385080 79 ntBASIC0.74□□□□□ -2.29
SOX3P41225 Y_RNA.584-201ENST00000391090 114 ntBASIC0.74□□□□□ -2.29
SOX3P41225 RNU6ATAC6P-201ENST00000408132 126 ntBASIC0.74□□□□□ -2.29
SOX3P41225 RNU6ATAC27P-201ENST00000408289 119 ntBASIC0.74□□□□□ -2.29
SOX3P41225 RPS26P5-201ENST00000418544 335 ntBASIC0.74□□□□□ -2.29
SOX3P41225 MIR18B-201ENST00000454574 71 ntBASIC0.74□□□□□ -2.29
SOX3P41225 RNU6-426P-201ENST00000516464 97 ntBASIC0.74□□□□□ -2.29
SOX3P41225 CYP3A137P-201ENST00000562436 69 ntBASIC0.74□□□□□ -2.29
SOX3P41225 RNU6-774P-201ENST00000363238 107 ntBASIC0.73□□□□□ -2.29
SOX3P41225 RNY1P6-201ENST00000384193 109 ntBASIC0.73□□□□□ -2.29
SOX3P41225 Y_RNA.470-201ENST00000384307 117 ntBASIC0.73□□□□□ -2.29
SOX3P41225 MIR608-201ENST00000384820 100 ntBASIC0.73□□□□□ -2.29
SOX3P41225 RNU6ATAC31P-201ENST00000408513 126 ntBASIC0.73□□□□□ -2.29
SOX3P41225 SNORD83.1-201ENST00000411362 77 ntBASIC0.73□□□□□ -2.29
SOX3P41225 MIR1270-201ENST00000459320 83 ntBASIC0.73□□□□□ -2.29
Retrieved 100 of 98,524 protein–RNA pairs in 114.8 ms