Protein–RNA interactions for Protein: P35498

SCN1A, Sodium channel protein type 1 subunit alpha, humanhuman

Predictions only

Length 2,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1AP35498 RNU6-705P-201ENST00000410601 104 ntBASIC0.2□□□□□ -2.38
SCN1AP35498 RNU6-1100P-201ENST00000410691 104 ntBASIC0.2□□□□□ -2.38
SCN1AP35498 RNU6-860P-201ENST00000410860 104 ntBASIC0.2□□□□□ -2.38
SCN1AP35498 RNU6-1217P-201ENST00000411276 104 ntBASIC0.2□□□□□ -2.38
SCN1AP35498 RNU6-785P-201ENST00000411324 104 ntBASIC0.2□□□□□ -2.38
SCN1AP35498 AL138752.1-201ENST00000452964 351 ntBASIC0.2□□□□□ -2.38
SCN1AP35498 AC006504.6-201ENST00000590142 199 ntBASIC0.2□□□□□ -2.38
SCN1AP35498 U6.90-201ENST00000614007 104 ntBASIC0.2□□□□□ -2.38
SCN1AP35498 AL109933.3-201ENST00000619095 188 ntBASIC0.2□□□□□ -2.38
SCN1AP35498 U6.70-201ENST00000620287 104 ntBASIC0.2□□□□□ -2.38
SCN1AP35498 KCNQ1OT1_5.1-201ENST00000621902 226 ntBASIC0.2□□□□□ -2.38
SCN1AP35498 Y_RNA.11-201ENST00000362375 109 ntBASIC0.19□□□□□ -2.38
SCN1AP35498 RNU6-238P-201ENST00000363313 106 ntBASIC0.19□□□□□ -2.38
SCN1AP35498 RNU6-738P-201ENST00000384531 106 ntBASIC0.19□□□□□ -2.38
SCN1AP35498 TRAJ2-201ENST00000390535 66 ntAPPRIS P1 BASIC0.19□□□□□ -2.38
SCN1AP35498 RNU6-679P-201ENST00000391003 106 ntBASIC0.19□□□□□ -2.38
SCN1AP35498 RNA5SP237-201ENST00000410414 113 ntBASIC0.19□□□□□ -2.38
SCN1AP35498 SEPT7P4-201ENST00000437076 306 ntBASIC0.19□□□□□ -2.38
SCN1AP35498 MIR3612-201ENST00000579753 87 ntBASIC0.19□□□□□ -2.38
SCN1AP35498 MIR5197-201ENST00000583721 112 ntBASIC0.19□□□□□ -2.38
SCN1AP35498 AL162376.1-201ENST00000624117 175 ntBASIC0.19□□□□□ -2.38
SCN1AP35498 RNU6-653P-201ENST00000363074 106 ntBASIC0.18□□□□□ -2.38
SCN1AP35498 Y_RNA.294-201ENST00000364916 102 ntBASIC0.18□□□□□ -2.38
SCN1AP35498 RNU6-326P-201ENST00000365480 107 ntBASIC0.18□□□□□ -2.38
SCN1AP35498 RNU6-1227P-201ENST00000383981 107 ntBASIC0.18□□□□□ -2.38
SCN1AP35498 TRAJ1-201ENST00000390536 62 ntAPPRIS P1 BASIC0.18□□□□□ -2.38
SCN1AP35498 SNORA40.8-201ENST00000411034 126 ntBASIC0.18□□□□□ -2.38
SCN1AP35498 MTCYBP6-201ENST00000441810 138 ntBASIC0.18□□□□□ -2.38
SCN1AP35498 U2.14-201ENST00000615943 113 ntBASIC0.18□□□□□ -2.38
SCN1AP35498 SNORD36C-201ENST00000516733 66 ntBASIC0.18□□□□□ -2.38
SCN1AP35498 AC008608.1-201ENST00000603910 127 ntBASIC0.18□□□□□ -2.38
SCN1AP35498 Y_RNA.54-201ENST00000362766 105 ntBASIC0.17□□□□□ -2.38
SCN1AP35498 Y_RNA.202-201ENST00000364083 110 ntBASIC0.17□□□□□ -2.38
SCN1AP35498 RNU6-1190P-201ENST00000410811 104 ntBASIC0.17□□□□□ -2.38
SCN1AP35498 RNA5SP127-201ENST00000411051 133 ntBASIC0.17□□□□□ -2.38
SCN1AP35498 RNU5E-9P-201ENST00000411164 104 ntBASIC0.17□□□□□ -2.38
SCN1AP35498 RNU6-469P-201ENST00000516253 101 ntBASIC0.17□□□□□ -2.38
SCN1AP35498 RNU6-135P-201ENST00000516769 101 ntBASIC0.17□□□□□ -2.38
SCN1AP35498 MIR4744-201ENST00000581563 82 ntBASIC0.17□□□□□ -2.38
SCN1AP35498 AC008737.2-201ENST00000599446 118 ntBASIC0.17□□□□□ -2.38
SCN1AP35498 MIR6717-201ENST00000622747 73 ntBASIC0.17□□□□□ -2.38
SCN1AP35498 Y_RNA.47-201ENST00000362697 108 ntBASIC0.16□□□□□ -2.38
SCN1AP35498 Y_RNA.299-201ENST00000364973 94 ntBASIC0.16□□□□□ -2.38
SCN1AP35498 Y_RNA.396-201ENST00000383949 103 ntBASIC0.16□□□□□ -2.38
SCN1AP35498 SNORA1-201ENST00000384107 130 ntBASIC0.16□□□□□ -2.38
SCN1AP35498 RNU6-493P-201ENST00000391321 108 ntBASIC0.16□□□□□ -2.38
SCN1AP35498 Y_RNA.622-201ENST00000411091 108 ntBASIC0.16□□□□□ -2.38
SCN1AP35498 RNU6-1299P-201ENST00000516316 100 ntBASIC0.16□□□□□ -2.38
SCN1AP35498 AC133485.4-201ENST00000561835 220 ntBASIC0.16□□□□□ -2.38
SCN1AP35498 RNU6-888P-201ENST00000363010 101 ntBASIC0.16□□□□□ -2.38
SCN1AP35498 Y_RNA.145-201ENST00000363527 102 ntBASIC0.16□□□□□ -2.38
SCN1AP35498 RNU6-1099P-201ENST00000363533 107 ntBASIC0.16□□□□□ -2.38
SCN1AP35498 Y_RNA.280-201ENST00000364765 112 ntBASIC0.16□□□□□ -2.38
SCN1AP35498 ATP6V0E1P1-201ENST00000412537 226 ntBASIC0.16□□□□□ -2.38
SCN1AP35498 MIR4514-201ENST00000581410 57 ntBASIC0.16□□□□□ -2.38
SCN1AP35498 AC104408.1-201ENST00000605241 170 ntBASIC0.16□□□□□ -2.38
SCN1AP35498 5S_rRNA.15-201ENST00000611169 127 ntBASIC0.16□□□□□ -2.38
SCN1AP35498 HOTAIRM1_4.1-201ENST00000617934 102 ntBASIC0.16□□□□□ -2.38
SCN1AP35498 ABCA9-AS1-203ENST00000627596 426 ntTSL 5 BASIC0.16□□□□□ -2.38
SCN1AP35498 RNU6-349P-201ENST00000362402 107 ntBASIC0.15□□□□□ -2.39
SCN1AP35498 Y_RNA.133-201ENST00000363428 110 ntBASIC0.15□□□□□ -2.39
SCN1AP35498 Y_RNA.174-201ENST00000363781 105 ntBASIC0.15□□□□□ -2.39
SCN1AP35498 SNORD27-201ENST00000363981 72 ntBASIC0.15□□□□□ -2.39
SCN1AP35498 Y_RNA.262-201ENST00000364641 102 ntBASIC0.15□□□□□ -2.39
SCN1AP35498 RNU6-702P-201ENST00000364982 107 ntBASIC0.15□□□□□ -2.39
SCN1AP35498 Y_RNA.326-201ENST00000365176 113 ntBASIC0.15□□□□□ -2.39
SCN1AP35498 SNORA18-201ENST00000384416 132 ntBASIC0.15□□□□□ -2.39
SCN1AP35498 Y_RNA.515-201ENST00000384535 112 ntBASIC0.15□□□□□ -2.39
SCN1AP35498 MIR624-201ENST00000385217 97 ntBASIC0.15□□□□□ -2.39
SCN1AP35498 AC096949.1-201ENST00000412047 152 ntBASIC0.15□□□□□ -2.39
SCN1AP35498 RNU6-893P-201ENST00000458841 100 ntBASIC0.15□□□□□ -2.39
SCN1AP35498 RNU6-1194P-201ENST00000516208 104 ntBASIC0.15□□□□□ -2.39
SCN1AP35498 Y_RNA.697-201ENST00000516776 113 ntBASIC0.15□□□□□ -2.39
SCN1AP35498 MIR30D-201ENST00000362283 70 ntBASIC0.14□□□□□ -2.39
SCN1AP35498 RNU6-403P-201ENST00000363163 104 ntBASIC0.14□□□□□ -2.39
SCN1AP35498 RNA5SP117-201ENST00000365294 118 ntBASIC0.14□□□□□ -2.39
SCN1AP35498 MIRLET7F2-201ENST00000385277 83 ntBASIC0.14□□□□□ -2.39
SCN1AP35498 RNU6-561P-201ENST00000516222 102 ntBASIC0.14□□□□□ -2.39
SCN1AP35498 RNU7-53P-201ENST00000516705 60 ntBASIC0.14□□□□□ -2.39
SCN1AP35498 RNA5SP94-201ENST00000516917 108 ntBASIC0.14□□□□□ -2.39
SCN1AP35498 MIR4282-201ENST00000583613 67 ntBASIC0.14□□□□□ -2.39
SCN1AP35498 AC021443.1-201ENST00000604478 211 ntBASIC0.14□□□□□ -2.39
SCN1AP35498 DEFB131A-201ENST00000334879 213 ntAPPRIS P1 TSL 1 (best) BASIC0.14□□□□□ -2.39
SCN1AP35498 RNU6-1082P-201ENST00000364574 107 ntBASIC0.14□□□□□ -2.39
SCN1AP35498 Y_RNA.423-201ENST00000384057 113 ntBASIC0.14□□□□□ -2.39
SCN1AP35498 Y_RNA.454-201ENST00000384224 113 ntBASIC0.14□□□□□ -2.39
SCN1AP35498 SNORA8.2-201ENST00000384372 139 ntBASIC0.14□□□□□ -2.39
SCN1AP35498 Y_RNA.536-201ENST00000384621 113 ntBASIC0.14□□□□□ -2.39
SCN1AP35498 MIR329-2-201ENST00000385029 84 ntBASIC0.14□□□□□ -2.39
SCN1AP35498 AC108740.1-201ENST00000498629 225 ntBASIC0.14□□□□□ -2.39
SCN1AP35498 AC020891.4-201ENST00000605745 93 ntBASIC0.14□□□□□ -2.39
SCN1AP35498 RNU2-4P-201ENST00000606190 192 ntBASIC0.14□□□□□ -2.39
SCN1AP35498 SNORD118-201ENST00000363593 134 ntBASIC0.13□□□□□ -2.39
SCN1AP35498 RNA5SP517-201ENST00000364724 117 ntBASIC0.13□□□□□ -2.39
SCN1AP35498 RNU4-16P-201ENST00000364737 141 ntBASIC0.13□□□□□ -2.39
SCN1AP35498 Y_RNA.430-201ENST00000384081 110 ntBASIC0.13□□□□□ -2.39
SCN1AP35498 MIR760-201ENST00000390220 80 ntBASIC0.13□□□□□ -2.39
SCN1AP35498 RNU7-113P-201ENST00000459273 62 ntBASIC0.13□□□□□ -2.39
SCN1AP35498 MIR4305-201ENST00000583252 102 ntBASIC0.13□□□□□ -2.39
SCN1AP35498 AC078938.1-201ENST00000620993 318 ntBASIC0.13□□□□□ -2.39
Retrieved 100 of 98,524 protein–RNA pairs in 242.3 ms