Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 AC019288.1-201ENST00000557918 224 ntBASIC1.33□□□□□ -2.2
CIITAP33076 DLEU2_5.2-201ENST00000610606 84 ntBASIC1.33□□□□□ -2.2
CIITAP33076 MIR6078-201ENST00000611069 100 ntBASIC1.33□□□□□ -2.2
CIITAP33076 MIR6717-201ENST00000622747 73 ntBASIC1.33□□□□□ -2.2
CIITAP33076 AC021613.1-201ENST00000623880 111 ntBASIC1.33□□□□□ -2.2
CIITAP33076 MIR6841-201ENST00000637129 72 ntBASIC1.33□□□□□ -2.2
CIITAP33076 MIR539-201ENST00000365690 78 ntBASIC1.32□□□□□ -2.2
CIITAP33076 RNU7-107P-201ENST00000459121 61 ntBASIC1.32□□□□□ -2.2
CIITAP33076 RNU5E-3P-201ENST00000515913 68 ntBASIC1.32□□□□□ -2.2
CIITAP33076 RNA5SP480-201ENST00000516840 109 ntBASIC1.32□□□□□ -2.2
CIITAP33076 AC087277.2-201ENST00000533203 151 ntTSL 5 BASIC1.32□□□□□ -2.2
CIITAP33076 Y_RNA.757-201ENST00000578934 114 ntBASIC1.32□□□□□ -2.2
CIITAP33076 MIR302B-201ENST00000362188 73 ntBASIC1.31□□□□□ -2.2
CIITAP33076 MIR618-201ENST00000385287 98 ntBASIC1.31□□□□□ -2.2
CIITAP33076 AC245047.7-201ENST00000440265 293 ntBASIC1.31□□□□□ -2.2
CIITAP33076 RN7SKP19-201ENST00000516016 252 ntBASIC1.31□□□□□ -2.2
CIITAP33076 RNU6-781P-201ENST00000516377 101 ntBASIC1.31□□□□□ -2.2
CIITAP33076 RNU2-35P-201ENST00000516446 142 ntBASIC1.31□□□□□ -2.2
CIITAP33076 RNA5SP264-201ENST00000363115 107 ntBASIC1.3□□□□□ -2.2
CIITAP33076 RNU6-690P-201ENST00000365242 106 ntBASIC1.3□□□□□ -2.2
CIITAP33076 Y_RNA.430-201ENST00000384081 110 ntBASIC1.3□□□□□ -2.2
CIITAP33076 RNU6-80P-201ENST00000384195 107 ntBASIC1.3□□□□□ -2.2
CIITAP33076 RNU6-939P-201ENST00000384634 107 ntBASIC1.3□□□□□ -2.2
CIITAP33076 SNORA19-201ENST00000384737 128 ntBASIC1.3□□□□□ -2.2
CIITAP33076 MIRLET7F2-201ENST00000385277 83 ntBASIC1.3□□□□□ -2.2
CIITAP33076 RNA5SP144-201ENST00000410846 116 ntBASIC1.3□□□□□ -2.2
CIITAP33076 RNU6-602P-201ENST00000411155 105 ntBASIC1.3□□□□□ -2.2
CIITAP33076 AC244023.1-201ENST00000426884 112 ntBASIC1.3□□□□□ -2.2
CIITAP33076 RPL39P39-201ENST00000455840 151 ntBASIC1.3□□□□□ -2.2
CIITAP33076 RNU6-659P-201ENST00000516454 104 ntBASIC1.3□□□□□ -2.2
CIITAP33076 AC242498.1-201ENST00000604134 111 ntBASIC1.3□□□□□ -2.2
CIITAP33076 AL137067.1-201ENST00000615933 120 ntBASIC1.3□□□□□ -2.2
CIITAP33076 U2.22-201ENST00000636441 106 ntBASIC1.3□□□□□ -2.2
CIITAP33076 Y_RNA.630-201ENST00000411370 108 ntBASIC1.29□□□□□ -2.2
CIITAP33076 AL591704.2-201ENST00000421658 181 ntBASIC1.29□□□□□ -2.2
CIITAP33076 AC133485.4-201ENST00000561835 220 ntBASIC1.29□□□□□ -2.2
CIITAP33076 AC138907.4-201ENST00000570107 226 ntBASIC1.29□□□□□ -2.2
CIITAP33076 AL365222.1-201ENST00000614661 98 ntBASIC1.29□□□□□ -2.2
CIITAP33076 MIR6516-201ENST00000630554 81 ntBASIC1.29□□□□□ -2.2
CIITAP33076 C9orf84-201ENST00000318737 4661 ntAPPRIS P3 TSL 1 (best) BASIC1.28□□□□□ -2.2
CIITAP33076 RNU6-647P-201ENST00000364243 107 ntBASIC1.28□□□□□ -2.2
CIITAP33076 AL606753.1-201ENST00000427435 87 ntBASIC1.28□□□□□ -2.2
CIITAP33076 SNORA31.2-201ENST00000516019 134 ntBASIC1.28□□□□□ -2.2
CIITAP33076 RNA5SP102-201ENST00000516865 106 ntBASIC1.28□□□□□ -2.2
CIITAP33076 MIR4305-201ENST00000583252 102 ntBASIC1.28□□□□□ -2.2
CIITAP33076 RMST_2.1-201ENST00000617263 136 ntBASIC1.28□□□□□ -2.2
CIITAP33076 HOTAIRM1_4.1-201ENST00000617934 102 ntBASIC1.28□□□□□ -2.2
CIITAP33076 ZNF518A-210ENST00000624776 7994 ntAPPRIS P1 TSL 1 (best) BASIC1.28□□□□□ -2.21
CIITAP33076 Y_RNA.127-201ENST00000363386 109 ntBASIC1.27□□□□□ -2.21
CIITAP33076 Y_RNA.171-201ENST00000363760 102 ntBASIC1.27□□□□□ -2.21
CIITAP33076 Y_RNA.261-201ENST00000364631 102 ntBASIC1.27□□□□□ -2.21
CIITAP33076 SNORA1.1-201ENST00000364671 133 ntBASIC1.27□□□□□ -2.21
CIITAP33076 SNORD116-14-201ENST00000383894 92 ntBASIC1.27□□□□□ -2.21
CIITAP33076 SNORD116-17-201ENST00000383929 92 ntBASIC1.27□□□□□ -2.21
CIITAP33076 RNU6-22P-201ENST00000384355 107 ntBASIC1.27□□□□□ -2.21
CIITAP33076 SNORD116-15-201ENST00000384445 92 ntBASIC1.27□□□□□ -2.21
CIITAP33076 RNU6-1104P-201ENST00000384723 104 ntBASIC1.27□□□□□ -2.21
CIITAP33076 SNORD116-19-201ENST00000384729 92 ntBASIC1.27□□□□□ -2.21
CIITAP33076 MT-TI-201ENST00000387365 69 ntBASIC1.27□□□□□ -2.21
CIITAP33076 AL512326.2-201ENST00000426359 151 ntBASIC1.27□□□□□ -2.21
CIITAP33076 RNU6-772P-201ENST00000516042 105 ntBASIC1.27□□□□□ -2.21
CIITAP33076 AC021443.1-201ENST00000604478 211 ntBASIC1.27□□□□□ -2.21
CIITAP33076 SNORA22.1-201ENST00000362701 134 ntBASIC1.26□□□□□ -2.21
CIITAP33076 RNU6-654P-201ENST00000364373 107 ntBASIC1.26□□□□□ -2.21
CIITAP33076 Y_RNA.298-201ENST00000364960 107 ntBASIC1.26□□□□□ -2.21
CIITAP33076 SNORD58C-201ENST00000365223 64 ntBASIC1.26□□□□□ -2.21
CIITAP33076 SNORA75.2-201ENST00000391138 150 ntBASIC1.26□□□□□ -2.21
CIITAP33076 SNORA75.3-201ENST00000391231 150 ntBASIC1.26□□□□□ -2.21
CIITAP33076 RPS3AP1-201ENST00000413190 320 ntBASIC1.26□□□□□ -2.21
CIITAP33076 RNU7-123P-201ENST00000515911 60 ntBASIC1.26□□□□□ -2.21
CIITAP33076 RNU7-40P-201ENST00000516397 64 ntBASIC1.26□□□□□ -2.21
CIITAP33076 Y_RNA.712-201ENST00000517011 92 ntBASIC1.26□□□□□ -2.21
CIITAP33076 AC004148.1-201ENST00000571506 398 ntTSL 5 BASIC1.26□□□□□ -2.21
CIITAP33076 MIR103A2-201ENST00000362154 78 ntBASIC1.25□□□□□ -2.21
CIITAP33076 RNA5SP327-201ENST00000362494 101 ntBASIC1.25□□□□□ -2.21
CIITAP33076 SNORD114-26-201ENST00000363543 72 ntBASIC1.25□□□□□ -2.21
CIITAP33076 RNU6-1117P-201ENST00000384525 104 ntBASIC1.25□□□□□ -2.21
CIITAP33076 RNU6ATAC8P-201ENST00000408460 126 ntBASIC1.25□□□□□ -2.21
CIITAP33076 AC073127.1-201ENST00000447336 333 ntTSL 3 BASIC1.25□□□□□ -2.21
CIITAP33076 RNU7-164P-201ENST00000459221 62 ntBASIC1.25□□□□□ -2.21
CIITAP33076 RNY4P20-201ENST00000516678 93 ntBASIC1.25□□□□□ -2.21
CIITAP33076 RNU11-2P-201ENST00000516898 142 ntBASIC1.25□□□□□ -2.21
CIITAP33076 AC004812.1-201ENST00000540773 146 ntBASIC1.25□□□□□ -2.21
CIITAP33076 MIR3152-201ENST00000579801 74 ntBASIC1.25□□□□□ -2.21
CIITAP33076 SNORD115-2-201ENST00000362842 82 ntBASIC1.24□□□□□ -2.21
CIITAP33076 SNORD115-20-201ENST00000365099 82 ntBASIC1.24□□□□□ -2.21
CIITAP33076 Y_RNA.470-201ENST00000384307 117 ntBASIC1.24□□□□□ -2.21
CIITAP33076 SNORA25-201ENST00000384384 134 ntBASIC1.24□□□□□ -2.21
CIITAP33076 Y_RNA.540-201ENST00000384638 111 ntBASIC1.24□□□□□ -2.21
CIITAP33076 SNORD12C-201ENST00000386307 89 ntBASIC1.24□□□□□ -2.21
CIITAP33076 TRAJ3-201ENST00000390534 62 ntAPPRIS P1 BASIC1.24□□□□□ -2.21
CIITAP33076 RNU6-1168P-201ENST00000390831 104 ntBASIC1.24□□□□□ -2.21
CIITAP33076 RNU6-1333P-201ENST00000516162 93 ntBASIC1.24□□□□□ -2.21
CIITAP33076 AC022523.2-201ENST00000561045 150 ntBASIC1.24□□□□□ -2.21
CIITAP33076 MIR3914-2-201ENST00000637339 95 ntBASIC1.24□□□□□ -2.21
CIITAP33076 HECTD2-202ENST00000371667 4354 ntTSL 1 (best) BASIC1.23□□□□□ -2.21
CIITAP33076 SNORD38B-201ENST00000384690 67 ntBASIC1.23□□□□□ -2.21
CIITAP33076 RNA5SP95-201ENST00000410319 137 ntBASIC1.23□□□□□ -2.21
CIITAP33076 RNU6-613P-201ENST00000410412 108 ntBASIC1.23□□□□□ -2.21
CIITAP33076 RNA5SP261-201ENST00000410536 106 ntBASIC1.23□□□□□ -2.21
Retrieved 100 of 98,524 protein–RNA pairs in 186.3 ms