Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 LTN1-201ENST00000361371 7685 ntAPPRIS P1 TSL 1 (best) BASIC2.53□□□□□ -2
MSX1P28360 RNA5SP393-201ENST00000363423 117 ntBASIC2.53□□□□□ -2
MSX1P28360 RNU6-949P-201ENST00000384040 107 ntBASIC2.53□□□□□ -2
MSX1P28360 MIR196B-201ENST00000384852 84 ntBASIC2.53□□□□□ -2
MSX1P28360 MIR653-201ENST00000385279 96 ntBASIC2.53□□□□□ -2
MSX1P28360 SNORD109B-201ENST00000458961 67 ntBASIC2.53□□□□□ -2
MSX1P28360 SNORD4B-201ENST00000459083 72 ntBASIC2.53□□□□□ -2
MSX1P28360 SNORD109A-201ENST00000459128 67 ntBASIC2.53□□□□□ -2
MSX1P28360 SNORA31.15-201ENST00000516771 132 ntBASIC2.53□□□□□ -2
MSX1P28360 ZNRD1-AS1_1.6-201ENST00000610339 68 ntBASIC2.53□□□□□ -2
MSX1P28360 U7.4-201ENST00000614961 63 ntBASIC2.53□□□□□ -2
MSX1P28360 AC010297.1-201ENST00000623948 149 ntBASIC2.53□□□□□ -2
MSX1P28360 HS1BP3-208ENST00000631166 78 ntTSL 5 BASIC2.53□□□□□ -2
MSX1P28360 UHMK1-204ENST00000545294 8117 ntTSL 2 BASIC2.53□□□□□ -2
MSX1P28360 RNU6-203P-201ENST00000384038 104 ntBASIC2.52□□□□□ -2.01
MSX1P28360 MIR9-1-201ENST00000385198 89 ntBASIC2.52□□□□□ -2.01
MSX1P28360 SNORD88.1-201ENST00000408684 91 ntBASIC2.52□□□□□ -2.01
MSX1P28360 RNA5SP270-201ENST00000411361 118 ntBASIC2.52□□□□□ -2.01
MSX1P28360 AC009474.2-201ENST00000451383 136 ntBASIC2.52□□□□□ -2.01
MSX1P28360 SNORA31.17-201ENST00000516953 127 ntBASIC2.52□□□□□ -2.01
MSX1P28360 DEFB122-202ENST00000569013 197 ntBASIC2.52□□□□□ -2.01
MSX1P28360 AC090897.1-201ENST00000580909 226 ntBASIC2.52□□□□□ -2.01
MSX1P28360 AL049779.4-201ENST00000604500 156 ntBASIC2.52□□□□□ -2.01
MSX1P28360 AL512598.1-201ENST00000610158 273 ntBASIC2.52□□□□□ -2.01
MSX1P28360 Metazoa_SRP.32-201ENST00000622685 286 ntBASIC2.52□□□□□ -2.01
MSX1P28360 SLC4A7-201ENST00000295736 7757 ntAPPRIS P3 TSL 1 (best) BASIC2.52□□□□□ -2.01
MSX1P28360 AL138827.1-201ENST00000402666 306 ntBASIC2.51□□□□□ -2.01
MSX1P28360 RNA5SP21-201ENST00000410917 96 ntBASIC2.51□□□□□ -2.01
MSX1P28360 SNRPGP12-201ENST00000449481 213 ntBASIC2.51□□□□□ -2.01
MSX1P28360 AC003982.1-202ENST00000469928 248 ntBASIC2.51□□□□□ -2.01
MSX1P28360 AC090255.1-201ENST00000495779 349 ntBASIC2.51□□□□□ -2.01
MSX1P28360 AC079600.2-201ENST00000550076 130 ntBASIC2.51□□□□□ -2.01
MSX1P28360 Z82195.2-201ENST00000612348 18351 ntBASIC2.51□□□□□ -2.01
MSX1P28360 DYNC2H1-202ENST00000375735 13678 ntAPPRIS ALT1 TSL 1 (best) BASIC2.51□□□□□ -2.01
MSX1P28360 MYSM1-208ENST00000622766 6020 ntTSL 1 (best) BASIC2.51□□□□□ -2.01
MSX1P28360 SACS-201ENST00000382292 15324 ntAPPRIS P1 TSL 5 BASIC2.5□□□□□ -2.01
MSX1P28360 RNU6-859P-201ENST00000362728 107 ntBASIC2.5□□□□□ -2.01
MSX1P28360 Y_RNA.57-201ENST00000362806 113 ntBASIC2.5□□□□□ -2.01
MSX1P28360 RNU4-32P-201ENST00000363404 141 ntBASIC2.5□□□□□ -2.01
MSX1P28360 Y_RNA.545-201ENST00000384652 105 ntBASIC2.5□□□□□ -2.01
MSX1P28360 MIR194-1-201ENST00000384892 85 ntBASIC2.5□□□□□ -2.01
MSX1P28360 AC244023.1-201ENST00000426884 112 ntBASIC2.5□□□□□ -2.01
MSX1P28360 RPS27P21-201ENST00000486977 252 ntBASIC2.5□□□□□ -2.01
MSX1P28360 RNA5SP445-201ENST00000515889 115 ntBASIC2.5□□□□□ -2.01
MSX1P28360 MIR4446-201ENST00000578505 67 ntBASIC2.5□□□□□ -2.01
MSX1P28360 MIR5194-201ENST00000582634 120 ntBASIC2.5□□□□□ -2.01
MSX1P28360 AC242498.1-201ENST00000604134 111 ntBASIC2.5□□□□□ -2.01
MSX1P28360 AGTPBP1-205ENST00000376083 4208 ntAPPRIS P1 TSL 1 (best) BASIC2.49□□□□□ -2.01
MSX1P28360 RNU6-1094P-201ENST00000362416 104 ntBASIC2.49□□□□□ -2.01
MSX1P28360 RNU6-624P-201ENST00000363411 107 ntBASIC2.49□□□□□ -2.01
MSX1P28360 RNU6-478P-201ENST00000363904 110 ntBASIC2.49□□□□□ -2.01
MSX1P28360 RNU4-83P-201ENST00000410863 133 ntBASIC2.49□□□□□ -2.01
MSX1P28360 AC004965.1-201ENST00000413033 213 ntBASIC2.49□□□□□ -2.01
MSX1P28360 snoU13.2-201ENST00000459201 104 ntBASIC2.49□□□□□ -2.01
MSX1P28360 MIR4500-201ENST00000579472 76 ntBASIC2.49□□□□□ -2.01
MSX1P28360 FAS-AS1.1-201ENST00000615327 126 ntBASIC2.49□□□□□ -2.01
MSX1P28360 GS1-279B7.1-204ENST00000641809 378 ntBASIC2.49□□□□□ -2.01
MSX1P28360 OR2J3-203ENST00000641960 3342 ntAPPRIS P1 BASIC2.49□□□□□ -2.01
MSX1P28360 CLLU1-201ENST00000378485 3897 ntAPPRIS P1 TSL 1 (best) BASIC2.49□□□□□ -2.01
MSX1P28360 DNAH7-201ENST00000312428 12394 ntAPPRIS P1 TSL 1 (best) BASIC2.49□□□□□ -2.01
MSX1P28360 TAB3-205ENST00000378933 6671 ntAPPRIS P1 TSL 1 (best) BASIC2.49□□□□□ -2.01
MSX1P28360 SENP7-205ENST00000394091 4434 ntAPPRIS ALT2 TSL 1 (best) BASIC2.48□□□□□ -2.01
MSX1P28360 LCORL-202ENST00000382224 4984 ntAPPRIS ALT2 TSL 5 BASIC2.48□□□□□ -2.01
MSX1P28360 RNA5SP48-201ENST00000363969 126 ntBASIC2.48□□□□□ -2.01
MSX1P28360 RNU6ATAC42P-201ENST00000408637 95 ntBASIC2.48□□□□□ -2.01
MSX1P28360 RNA5SP450-201ENST00000411206 102 ntBASIC2.48□□□□□ -2.01
MSX1P28360 AC138749.4-201ENST00000563970 127 ntBASIC2.48□□□□□ -2.01
MSX1P28360 AC024610.1-201ENST00000582685 323 ntTSL 3 BASIC2.48□□□□□ -2.01
MSX1P28360 SIRT1-203ENST00000406900 3295 ntTSL 2 BASIC2.47□□□□□ -2.01
MSX1P28360 DENND4A-202ENST00000443035 8665 ntTSL 1 (best) BASIC2.47□□□□□ -2.01
MSX1P28360 AL450471.1-201ENST00000447509 127 ntBASIC2.47□□□□□ -2.01
MSX1P28360 RNU7-85P-201ENST00000458851 63 ntBASIC2.47□□□□□ -2.01
MSX1P28360 Y_RNA.648-201ENST00000459455 110 ntBASIC2.47□□□□□ -2.01
MSX1P28360 AC008413.1-201ENST00000511864 177 ntBASIC2.47□□□□□ -2.01
MSX1P28360 RNU6-850P-201ENST00000516934 103 ntBASIC2.47□□□□□ -2.01
MSX1P28360 MIR3670-2-201ENST00000582974 65 ntBASIC2.47□□□□□ -2.01
MSX1P28360 MIR3670-1-201ENST00000584160 65 ntBASIC2.47□□□□□ -2.01
MSX1P28360 MIR3670-3-201ENST00000584855 65 ntBASIC2.47□□□□□ -2.01
MSX1P28360 PRELID3BP2-201ENST00000605362 201 ntBASIC2.47□□□□□ -2.01
MSX1P28360 MIR3670-4-201ENST00000612260 65 ntBASIC2.47□□□□□ -2.01
MSX1P28360 TRAJ36-201ENST00000614481 58 ntAPPRIS P1 BASIC2.47□□□□□ -2.01
MSX1P28360 WWP1P1-201ENST00000466609 2769 ntBASIC2.47□□□□□ -2.01
MSX1P28360 ZBTB6-201ENST00000373659 4106 ntAPPRIS P1 TSL 1 (best) BASIC2.46□□□□□ -2.02
MSX1P28360 RNU6-571P-201ENST00000384128 107 ntBASIC2.46□□□□□ -2.02
MSX1P28360 MIR588-201ENST00000384900 83 ntBASIC2.46□□□□□ -2.02
MSX1P28360 RNU4ATAC16P-201ENST00000408512 126 ntBASIC2.46□□□□□ -2.02
MSX1P28360 AL355388.1-201ENST00000415726 401 ntTSL 2 BASIC2.46□□□□□ -2.02
MSX1P28360 AL513328.1-201ENST00000446460 224 ntBASIC2.46□□□□□ -2.02
MSX1P28360 snoU13.11-201ENST00000459219 104 ntBASIC2.46□□□□□ -2.02
MSX1P28360 SNORD111.1-201ENST00000516421 86 ntBASIC2.46□□□□□ -2.02
MSX1P28360 TXLNGY-201ENST00000253320 7299 ntTSL 2 BASIC2.46□□□□□ -2.02
MSX1P28360 FAR1-204ENST00000532502 5820 ntTSL 2 BASIC2.45□□□□□ -2.02
MSX1P28360 RNU1-112P-201ENST00000364401 164 ntBASIC2.45□□□□□ -2.02
MSX1P28360 Y_RNA.508-201ENST00000384502 114 ntBASIC2.45□□□□□ -2.02
MSX1P28360 AC025887.1-201ENST00000578349 264 ntTSL 3 BASIC2.45□□□□□ -2.02
MSX1P28360 CERS6-AS1-202ENST00000594898 499 ntTSL 5 BASIC2.45□□□□□ -2.02
MSX1P28360 MIPOL1-203ENST00000537471 5954 ntAPPRIS P1 TSL 5 BASIC2.45□□□□□ -2.02
MSX1P28360 ATP11C-201ENST00000327569 6115 ntAPPRIS P3 TSL 1 (best) BASIC2.45□□□□□ -2.02
MSX1P28360 SENP7-206ENST00000394094 4703 ntAPPRIS ALT2 TSL 1 (best) BASIC2.45□□□□□ -2.02
MSX1P28360 CCPG1-203ENST00000442196 3453 ntAPPRIS P1 TSL 2 BASIC2.44□□□□□ -2.02
Retrieved 100 of 98,524 protein–RNA pairs in 22.6 ms