Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 RPL39P28-201ENST00000465655 155 ntBASIC0.88□□□□□ -2.27
HOXD4P09016 SNORA25.12-201ENST00000516202 82 ntBASIC0.88□□□□□ -2.27
HOXD4P09016 RNU11-2P-201ENST00000516898 142 ntBASIC0.88□□□□□ -2.27
HOXD4P09016 DLEU2_5.2-201ENST00000610606 84 ntBASIC0.88□□□□□ -2.27
HOXD4P09016 SEPT14P17-201ENST00000617978 177 ntBASIC0.88□□□□□ -2.27
HOXD4P09016 IST1-227ENST00000626438 126 ntTSL 5 BASIC0.88□□□□□ -2.27
HOXD4P09016 Z97988.1-201ENST00000637697 135 ntBASIC0.88□□□□□ -2.27
HOXD4P09016 RNU6-508P-201ENST00000363231 103 ntBASIC0.87□□□□□ -2.27
HOXD4P09016 SNORA1.1-201ENST00000364671 133 ntBASIC0.87□□□□□ -2.27
HOXD4P09016 RNU6-460P-201ENST00000391158 108 ntBASIC0.87□□□□□ -2.27
HOXD4P09016 RNU7-200P-201ENST00000516105 62 ntBASIC0.87□□□□□ -2.27
HOXD4P09016 Y_RNA.686-201ENST00000516548 134 ntBASIC0.87□□□□□ -2.27
HOXD4P09016 MIR2115-201ENST00000516657 100 ntBASIC0.87□□□□□ -2.27
HOXD4P09016 CYP3A137P-201ENST00000562436 69 ntBASIC0.87□□□□□ -2.27
HOXD4P09016 AC008163.1-202ENST00000636004 2889 ntBASIC0.87□□□□□ -2.27
HOXD4P09016 Y_RNA.215-201ENST00000364204 112 ntBASIC0.86□□□□□ -2.27
HOXD4P09016 RNU4-16P-201ENST00000364737 141 ntBASIC0.86□□□□□ -2.27
HOXD4P09016 RNU6-396P-201ENST00000365369 105 ntBASIC0.86□□□□□ -2.27
HOXD4P09016 MIR569-201ENST00000385228 96 ntBASIC0.86□□□□□ -2.27
HOXD4P09016 MIR513C-201ENST00000401352 84 ntBASIC0.86□□□□□ -2.27
HOXD4P09016 RNU6-613P-201ENST00000410412 108 ntBASIC0.86□□□□□ -2.27
HOXD4P09016 DIP2A-IT1-201ENST00000442434 428 ntTSL 2 BASIC0.86□□□□□ -2.27
HOXD4P09016 MIR548X2-201ENST00000579776 100 ntBASIC0.86□□□□□ -2.27
HOXD4P09016 AC079466.2-201ENST00000585394 185 ntTSL 5 BASIC0.86□□□□□ -2.27
HOXD4P09016 MIR6717-201ENST00000622747 73 ntBASIC0.86□□□□□ -2.27
HOXD4P09016 AC108866.1-201ENST00000503073 2339 ntTSL 5 BASIC0.86□□□□□ -2.27
HOXD4P09016 RNU6-349P-201ENST00000362402 107 ntBASIC0.85□□□□□ -2.27
HOXD4P09016 Y_RNA.120-201ENST00000363304 110 ntBASIC0.85□□□□□ -2.27
HOXD4P09016 RNY1P6-201ENST00000384193 109 ntBASIC0.85□□□□□ -2.27
HOXD4P09016 Y_RNA.506-201ENST00000384494 102 ntBASIC0.85□□□□□ -2.27
HOXD4P09016 RNU6-1319P-201ENST00000390855 104 ntBASIC0.85□□□□□ -2.27
HOXD4P09016 RNU6-205P-201ENST00000390858 107 ntBASIC0.85□□□□□ -2.27
HOXD4P09016 RNU6-747P-201ENST00000390928 104 ntBASIC0.85□□□□□ -2.27
HOXD4P09016 RNU6-241P-201ENST00000391148 104 ntBASIC0.85□□□□□ -2.27
HOXD4P09016 RNU6-602P-201ENST00000411155 105 ntBASIC0.85□□□□□ -2.27
HOXD4P09016 RNU6-177P-201ENST00000411257 104 ntBASIC0.85□□□□□ -2.27
HOXD4P09016 AC063976.4-201ENST00000421971 163 ntBASIC0.85□□□□□ -2.27
HOXD4P09016 AC244023.1-201ENST00000426884 112 ntBASIC0.85□□□□□ -2.27
HOXD4P09016 AC002429.1-201ENST00000437672 148 ntBASIC0.85□□□□□ -2.27
HOXD4P09016 AL353614.1-201ENST00000445631 206 ntTSL 5 BASIC0.85□□□□□ -2.27
HOXD4P09016 UBL5P1-201ENST00000507979 193 ntBASIC0.85□□□□□ -2.27
HOXD4P09016 RNA5SP436-201ENST00000516020 115 ntBASIC0.85□□□□□ -2.27
HOXD4P09016 RNU6-346P-201ENST00000516288 111 ntBASIC0.85□□□□□ -2.27
HOXD4P09016 AC023827.1-201ENST00000569247 97 ntBASIC0.85□□□□□ -2.27
HOXD4P09016 AC004148.1-201ENST00000571506 398 ntTSL 5 BASIC0.85□□□□□ -2.27
HOXD4P09016 AC242498.1-201ENST00000604134 111 ntBASIC0.85□□□□□ -2.27
HOXD4P09016 AC021613.1-201ENST00000623880 111 ntBASIC0.85□□□□□ -2.27
HOXD4P09016 LEKR1-212ENST00000640869 237 ntTSL 5 BASIC0.85□□□□□ -2.27
HOXD4P09016 RNU6-309P-201ENST00000364573 106 ntBASIC0.84□□□□□ -2.27
HOXD4P09016 RNU6-915P-201ENST00000364943 103 ntBASIC0.84□□□□□ -2.27
HOXD4P09016 SNORA20-201ENST00000384662 132 ntBASIC0.84□□□□□ -2.27
HOXD4P09016 MT-TN-201ENST00000387400 73 ntBASIC0.84□□□□□ -2.27
HOXD4P09016 TRAJ22-201ENST00000390515 63 ntAPPRIS P1 BASIC0.84□□□□□ -2.27
HOXD4P09016 MTATP6P21-201ENST00000440681 189 ntBASIC0.84□□□□□ -2.27
HOXD4P09016 RNU7-90P-201ENST00000459216 62 ntBASIC0.84□□□□□ -2.27
HOXD4P09016 Y_RNA.651-201ENST00000459380 103 ntBASIC0.84□□□□□ -2.27
HOXD4P09016 RNA5SP272-201ENST00000516095 111 ntBASIC0.84□□□□□ -2.27
HOXD4P09016 RNU6-426P-201ENST00000516464 97 ntBASIC0.84□□□□□ -2.27
HOXD4P09016 Y_RNA.690-201ENST00000516603 95 ntBASIC0.84□□□□□ -2.27
HOXD4P09016 MIR3973-201ENST00000579824 107 ntBASIC0.84□□□□□ -2.27
HOXD4P09016 MIR4661-201ENST00000582720 75 ntBASIC0.84□□□□□ -2.27
HOXD4P09016 MIR6841-201ENST00000637129 72 ntBASIC0.84□□□□□ -2.27
HOXD4P09016 MIR377-201ENST00000362145 69 ntBASIC0.83□□□□□ -2.28
HOXD4P09016 RNA5SP325-201ENST00000363756 130 ntBASIC0.83□□□□□ -2.28
HOXD4P09016 SNORD18B-201ENST00000365659 72 ntBASIC0.83□□□□□ -2.28
HOXD4P09016 RNY1P5-201ENST00000383890 115 ntBASIC0.83□□□□□ -2.28
HOXD4P09016 RNU6-1062P-201ENST00000383908 107 ntBASIC0.83□□□□□ -2.28
HOXD4P09016 Y_RNA.420-201ENST00000384043 110 ntBASIC0.83□□□□□ -2.28
HOXD4P09016 Y_RNA.488-201ENST00000384403 102 ntBASIC0.83□□□□□ -2.28
HOXD4P09016 SNORA2B-201ENST00000384583 137 ntBASIC0.83□□□□□ -2.28
HOXD4P09016 SNORD38B-201ENST00000384690 67 ntBASIC0.83□□□□□ -2.28
HOXD4P09016 AL603914.1-201ENST00000401964 204 ntBASIC0.83□□□□□ -2.28
HOXD4P09016 RNA5SP261-201ENST00000410536 106 ntBASIC0.83□□□□□ -2.28
HOXD4P09016 RPS3AP1-201ENST00000413190 320 ntBASIC0.83□□□□□ -2.28
HOXD4P09016 AL138808.1-201ENST00000441428 371 ntTSL 2 BASIC0.83□□□□□ -2.28
HOXD4P09016 AC036111.3-201ENST00000526389 112 ntBASIC0.83□□□□□ -2.28
HOXD4P09016 PNRC2-204ENST00000579103 171 ntTSL 2 BASIC0.83□□□□□ -2.28
HOXD4P09016 MIR4264-201ENST00000583520 66 ntBASIC0.83□□□□□ -2.28
HOXD4P09016 AP000753.3-201ENST00000604083 169 ntBASIC0.83□□□□□ -2.28
HOXD4P09016 SNORD38B-202ENST00000625943 69 ntBASIC0.83□□□□□ -2.28
HOXD4P09016 SNORA22.1-201ENST00000362701 134 ntBASIC0.82□□□□□ -2.28
HOXD4P09016 Y_RNA.205-201ENST00000364128 113 ntBASIC0.82□□□□□ -2.28
HOXD4P09016 Y_RNA.430-201ENST00000384081 110 ntBASIC0.82□□□□□ -2.28
HOXD4P09016 POLR2J4-204ENST00000418424 324 ntBASIC0.82□□□□□ -2.28
HOXD4P09016 RNU6-240P-201ENST00000516098 97 ntBASIC0.82□□□□□ -2.28
HOXD4P09016 MIR3152-201ENST00000579801 74 ntBASIC0.82□□□□□ -2.28
HOXD4P09016 AC106800.4-201ENST00000614905 153 ntBASIC0.82□□□□□ -2.28
HOXD4P09016 Y_RNA.168-201ENST00000363740 102 ntBASIC0.81□□□□□ -2.28
HOXD4P09016 SNORD114-24-201ENST00000365029 72 ntBASIC0.81□□□□□ -2.28
HOXD4P09016 RNU6-690P-201ENST00000365242 106 ntBASIC0.81□□□□□ -2.28
HOXD4P09016 MIR200A-201ENST00000384875 90 ntBASIC0.81□□□□□ -2.28
HOXD4P09016 MIR146A-201ENST00000385201 99 ntBASIC0.81□□□□□ -2.28
HOXD4P09016 SNORD12C-201ENST00000386307 89 ntBASIC0.81□□□□□ -2.28
HOXD4P09016 RNU5E-3P-201ENST00000515913 68 ntBASIC0.81□□□□□ -2.28
HOXD4P09016 RN7SL793P-201ENST00000583259 296 ntBASIC0.81□□□□□ -2.28
HOXD4P09016 RNU6-94P-201ENST00000607728 107 ntBASIC0.81□□□□□ -2.28
HOXD4P09016 AC011603.4-201ENST00000611325 277 ntBASIC0.81□□□□□ -2.28
HOXD4P09016 uc_338.6-201ENST00000613544 171 ntBASIC0.81□□□□□ -2.28
HOXD4P09016 MIR6740-201ENST00000618268 113 ntBASIC0.81□□□□□ -2.28
HOXD4P09016 RNU6-774P-201ENST00000363238 107 ntBASIC0.8□□□□□ -2.28
Retrieved 100 of 98,524 protein–RNA pairs in 173 ms