Protein–RNA interactions for Protein: O00257

CBX4, E3 SUMO-protein ligase CBX4, humanhuman

Predictions only

Length 560 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CBX4O00257 COX6CP6-201ENST00000490840 228 ntBASIC1.65□□□□□ -2.15
CBX4O00257 SNORA31.2-201ENST00000516019 134 ntBASIC1.65□□□□□ -2.15
CBX4O00257 RNU2-35P-201ENST00000516446 142 ntBASIC1.65□□□□□ -2.15
CBX4O00257 AP000753.3-201ENST00000604083 169 ntBASIC1.65□□□□□ -2.15
CBX4O00257 SLC9C2-201ENST00000367714 4428 ntAPPRIS P1 TSL 1 (best) BASIC1.65□□□□□ -2.15
CBX4O00257 RNY1P10-201ENST00000363268 113 ntBASIC1.64□□□□□ -2.15
CBX4O00257 MIRLET7F2-201ENST00000385277 83 ntBASIC1.64□□□□□ -2.15
CBX4O00257 SNORA67.5-201ENST00000391036 107 ntBASIC1.64□□□□□ -2.15
CBX4O00257 AC090844.1-201ENST00000422019 156 ntBASIC1.64□□□□□ -2.15
CBX4O00257 AC048334.1-201ENST00000477975 159 ntBASIC1.64□□□□□ -2.15
CBX4O00257 AP003716.2-201ENST00000528260 108 ntBASIC1.64□□□□□ -2.15
CBX4O00257 AC004812.1-201ENST00000540773 146 ntBASIC1.64□□□□□ -2.15
CBX4O00257 PRELID3BP2-201ENST00000605362 201 ntBASIC1.64□□□□□ -2.15
CBX4O00257 MTND5P18-201ENST00000445624 1801 ntBASIC1.63□□□□□ -2.15
CBX4O00257 AC008781.2-201ENST00000502205 2480 ntTSL 1 (best) BASIC1.63□□□□□ -2.15
CBX4O00257 Y_RNA.116-201ENST00000363292 103 ntBASIC1.63□□□□□ -2.15
CBX4O00257 Y_RNA.171-201ENST00000363760 102 ntBASIC1.63□□□□□ -2.15
CBX4O00257 RNU1-42P-201ENST00000364033 160 ntBASIC1.63□□□□□ -2.15
CBX4O00257 Y_RNA.531-201ENST00000384589 121 ntBASIC1.63□□□□□ -2.15
CBX4O00257 MIR489-201ENST00000384923 84 ntBASIC1.63□□□□□ -2.15
CBX4O00257 MIR1302-7-201ENST00000408841 72 ntBASIC1.63□□□□□ -2.15
CBX4O00257 snoU13.18-201ENST00000459483 104 ntBASIC1.63□□□□□ -2.15
CBX4O00257 AC078980.1-201ENST00000485384 262 ntTSL 2 BASIC1.63□□□□□ -2.15
CBX4O00257 NPAT-201ENST00000278612 6117 ntAPPRIS P2 TSL 1 (best) BASIC1.63□□□□□ -2.15
CBX4O00257 TFEC-204ENST00000457268 6309 ntTSL 3 BASIC1.62□□□□□ -2.15
CBX4O00257 Y_RNA.198-201ENST00000364013 98 ntBASIC1.62□□□□□ -2.15
CBX4O00257 Y_RNA.299-201ENST00000364973 94 ntBASIC1.62□□□□□ -2.15
CBX4O00257 Y_RNA.563-201ENST00000384707 108 ntBASIC1.62□□□□□ -2.15
CBX4O00257 MIR1185-1-201ENST00000408598 86 ntBASIC1.62□□□□□ -2.15
CBX4O00257 Y_RNA.630-201ENST00000411370 108 ntBASIC1.62□□□□□ -2.15
CBX4O00257 AL512326.2-201ENST00000426359 151 ntBASIC1.62□□□□□ -2.15
CBX4O00257 AC113410.1-201ENST00000505029 247 ntBASIC1.62□□□□□ -2.15
CBX4O00257 SNORD53B-201ENST00000577887 78 ntBASIC1.62□□□□□ -2.15
CBX4O00257 MIR4264-201ENST00000583520 66 ntBASIC1.62□□□□□ -2.15
CBX4O00257 AL512598.1-201ENST00000610158 273 ntBASIC1.62□□□□□ -2.15
CBX4O00257 ZNF260-203ENST00000588993 4174 ntAPPRIS P1 TSL 1 (best) BASIC1.61□□□□□ -2.15
CBX4O00257 MT-TN-201ENST00000387400 73 ntBASIC1.61□□□□□ -2.15
CBX4O00257 RNA5SP33-201ENST00000516687 98 ntBASIC1.61□□□□□ -2.15
CBX4O00257 ZFAT-AS1_2.1-201ENST00000613742 201 ntBASIC1.61□□□□□ -2.15
CBX4O00257 RNA5SP363-201ENST00000365072 115 ntBASIC1.6□□□□□ -2.15
CBX4O00257 RNU6-1258P-201ENST00000516911 111 ntBASIC1.6□□□□□ -2.15
CBX4O00257 MIR6516-201ENST00000630554 81 ntBASIC1.6□□□□□ -2.15
CBX4O00257 SNORD115-2-201ENST00000362842 82 ntBASIC1.59□□□□□ -2.15
CBX4O00257 SNORD115-20-201ENST00000365099 82 ntBASIC1.59□□□□□ -2.15
CBX4O00257 MIR548A3-201ENST00000385297 97 ntBASIC1.59□□□□□ -2.15
CBX4O00257 AL670379.3-201ENST00000605040 251 ntBASIC1.59□□□□□ -2.15
CBX4O00257 SEPT14P17-201ENST00000617978 177 ntBASIC1.59□□□□□ -2.15
CBX4O00257 Y_RNA.327-201ENST00000365201 102 ntBASIC1.58□□□□□ -2.16
CBX4O00257 MIR1323-201ENST00000408090 73 ntBASIC1.58□□□□□ -2.16
CBX4O00257 RNU6-613P-201ENST00000410412 108 ntBASIC1.58□□□□□ -2.16
CBX4O00257 RNA5SP237-201ENST00000410414 113 ntBASIC1.58□□□□□ -2.16
CBX4O00257 Y_RNA.649-201ENST00000459077 103 ntBASIC1.58□□□□□ -2.16
CBX4O00257 NMTRQ-TTG12-1-201ENST00000467595 72 ntBASIC1.58□□□□□ -2.16
CBX4O00257 RPS23P4-201ENST00000487908 423 ntBASIC1.58□□□□□ -2.16
CBX4O00257 SNORD33.1-201ENST00000516213 88 ntBASIC1.58□□□□□ -2.16
CBX4O00257 AC022523.2-201ENST00000561045 150 ntBASIC1.58□□□□□ -2.16
CBX4O00257 MIR3163-201ENST00000581592 73 ntBASIC1.58□□□□□ -2.16
CBX4O00257 PPP1R3A-201ENST00000284601 4384 ntAPPRIS P1 TSL 1 (best) BASIC1.57□□□□□ -2.16
CBX4O00257 RNU6-834P-201ENST00000362367 110 ntBASIC1.57□□□□□ -2.16
CBX4O00257 RNU6-60P-201ENST00000364792 103 ntBASIC1.57□□□□□ -2.16
CBX4O00257 Y_RNA.330-201ENST00000365230 109 ntBASIC1.57□□□□□ -2.16
CBX4O00257 Y_RNA.353-201ENST00000365440 108 ntBASIC1.57□□□□□ -2.16
CBX4O00257 Y_RNA.470-201ENST00000384307 117 ntBASIC1.57□□□□□ -2.16
CBX4O00257 RNU6-910P-201ENST00000390844 107 ntBASIC1.57□□□□□ -2.16
CBX4O00257 SNORA67.6-201ENST00000391093 99 ntBASIC1.57□□□□□ -2.16
CBX4O00257 RNU4-69P-201ENST00000410677 143 ntBASIC1.57□□□□□ -2.16
CBX4O00257 AL591704.2-201ENST00000421658 181 ntBASIC1.57□□□□□ -2.16
CBX4O00257 GNAS-AS1_4.1-201ENST00000616546 112 ntBASIC1.57□□□□□ -2.16
CBX4O00257 MIR377-201ENST00000362145 69 ntBASIC1.56□□□□□ -2.16
CBX4O00257 Y_RNA.224-201ENST00000364308 111 ntBASIC1.56□□□□□ -2.16
CBX4O00257 Y_RNA.273-201ENST00000364703 102 ntBASIC1.56□□□□□ -2.16
CBX4O00257 SNORA18-201ENST00000384416 132 ntBASIC1.56□□□□□ -2.16
CBX4O00257 SNORA80D-201ENST00000384488 135 ntBASIC1.56□□□□□ -2.16
CBX4O00257 MIR517C-201ENST00000385103 95 ntBASIC1.56□□□□□ -2.16
CBX4O00257 SNORD12C-201ENST00000386307 89 ntBASIC1.56□□□□□ -2.16
CBX4O00257 RNU6-205P-201ENST00000390858 107 ntBASIC1.56□□□□□ -2.16
CBX4O00257 SNORD77B-201ENST00000391112 67 ntBASIC1.56□□□□□ -2.16
CBX4O00257 MRPL35P3-201ENST00000421557 364 ntBASIC1.56□□□□□ -2.16
CBX4O00257 AC244023.1-201ENST00000426884 112 ntBASIC1.56□□□□□ -2.16
CBX4O00257 RNU6-970P-201ENST00000516312 107 ntBASIC1.56□□□□□ -2.16
CBX4O00257 SNORA70.22-201ENST00000517160 124 ntBASIC1.56□□□□□ -2.16
CBX4O00257 MTND5P34-201ENST00000568888 325 ntBASIC1.56□□□□□ -2.16
CBX4O00257 AC242498.1-201ENST00000604134 111 ntBASIC1.56□□□□□ -2.16
CBX4O00257 KIAA1551-201ENST00000312561 6230 ntAPPRIS P1 TSL 1 (best) BASIC1.55□□□□□ -2.16
CBX4O00257 RNY4P6-201ENST00000363667 96 ntBASIC1.55□□□□□ -2.16
CBX4O00257 RNU6-1056P-201ENST00000383996 107 ntBASIC1.55□□□□□ -2.16
CBX4O00257 RNU6-1104P-201ENST00000384723 104 ntBASIC1.55□□□□□ -2.16
CBX4O00257 MIR7-2-201ENST00000384970 110 ntBASIC1.55□□□□□ -2.16
CBX4O00257 Y_RNA.629-201ENST00000411368 105 ntBASIC1.55□□□□□ -2.16
CBX4O00257 MIR548AE2-201ENST00000583456 67 ntBASIC1.55□□□□□ -2.16
CBX4O00257 RNU6-654P-201ENST00000364373 107 ntBASIC1.54□□□□□ -2.16
CBX4O00257 RNU6-476P-201ENST00000384726 107 ntBASIC1.54□□□□□ -2.16
CBX4O00257 RNU6-1237P-201ENST00000384777 107 ntBASIC1.54□□□□□ -2.16
CBX4O00257 MIR588-201ENST00000384900 83 ntBASIC1.54□□□□□ -2.16
CBX4O00257 MIR222-201ENST00000384992 110 ntBASIC1.54□□□□□ -2.16
CBX4O00257 SNORA75.2-201ENST00000391138 150 ntBASIC1.54□□□□□ -2.16
CBX4O00257 SNORA75.3-201ENST00000391231 150 ntBASIC1.54□□□□□ -2.16
CBX4O00257 MIR1304-201ENST00000408243 91 ntBASIC1.54□□□□□ -2.16
CBX4O00257 RNU6-1064P-201ENST00000410626 104 ntBASIC1.54□□□□□ -2.16
CBX4O00257 AL031386.1-201ENST00000411940 142 ntTSL 5 BASIC1.54□□□□□ -2.16
Retrieved 100 of 98,524 protein–RNA pairs in 127.9 ms