Protein–RNA interactions for Protein: A0A0J9YXS1

NPHP3-ACAD11, NPHP3-ACAD11 readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 232 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3-ACAD11A0A0J9YXS1 SNORA18-201ENST00000384416 132 ntBASIC1.91□□□□□ -2.1
NPHP3-ACAD11A0A0J9YXS1 RNU6-905P-201ENST00000384434 107 ntBASIC1.91□□□□□ -2.1
NPHP3-ACAD11A0A0J9YXS1 MIR764-201ENST00000390811 85 ntBASIC1.91□□□□□ -2.1
NPHP3-ACAD11A0A0J9YXS1 AL356379.1-201ENST00000414105 126 ntBASIC1.91□□□□□ -2.1
NPHP3-ACAD11A0A0J9YXS1 HSPE1P24-201ENST00000450782 238 ntBASIC1.91□□□□□ -2.1
NPHP3-ACAD11A0A0J9YXS1 RPS27P21-201ENST00000486977 252 ntBASIC1.91□□□□□ -2.1
NPHP3-ACAD11A0A0J9YXS1 RNU6-109P-201ENST00000516364 107 ntBASIC1.91□□□□□ -2.1
NPHP3-ACAD11A0A0J9YXS1 RNU6-184P-201ENST00000516514 107 ntBASIC1.91□□□□□ -2.1
NPHP3-ACAD11A0A0J9YXS1 RNU6-1255P-201ENST00000363434 112 ntBASIC1.9□□□□□ -2.11
NPHP3-ACAD11A0A0J9YXS1 RNU6-640P-201ENST00000363693 105 ntBASIC1.9□□□□□ -2.11
NPHP3-ACAD11A0A0J9YXS1 Y_RNA.544-201ENST00000384650 113 ntBASIC1.9□□□□□ -2.11
NPHP3-ACAD11A0A0J9YXS1 SNORD38B-201ENST00000384690 67 ntBASIC1.9□□□□□ -2.11
NPHP3-ACAD11A0A0J9YXS1 MIR504-201ENST00000385065 83 ntBASIC1.9□□□□□ -2.11
NPHP3-ACAD11A0A0J9YXS1 MIR605-201ENST00000385078 83 ntBASIC1.9□□□□□ -2.11
NPHP3-ACAD11A0A0J9YXS1 SNORA7.5-201ENST00000410672 110 ntBASIC1.9□□□□□ -2.11
NPHP3-ACAD11A0A0J9YXS1 RNU6-733P-201ENST00000410759 104 ntBASIC1.9□□□□□ -2.11
NPHP3-ACAD11A0A0J9YXS1 AL353813.1-201ENST00000440700 253 ntBASIC1.9□□□□□ -2.11
NPHP3-ACAD11A0A0J9YXS1 snoU13.9-201ENST00000458927 103 ntBASIC1.9□□□□□ -2.11
NPHP3-ACAD11A0A0J9YXS1 RNA5SP445-201ENST00000515889 115 ntBASIC1.9□□□□□ -2.11
NPHP3-ACAD11A0A0J9YXS1 SNORD38B-202ENST00000625943 69 ntBASIC1.9□□□□□ -2.11
NPHP3-ACAD11A0A0J9YXS1 AL359851.1-201ENST00000569460 4997 ntBASIC1.89□□□□□ -2.11
NPHP3-ACAD11A0A0J9YXS1 WWP1P1-201ENST00000466609 2769 ntBASIC1.89□□□□□ -2.11
NPHP3-ACAD11A0A0J9YXS1 MBNL3-212ENST00000538204 11294 ntTSL 1 (best) BASIC1.89□□□□□ -2.11
NPHP3-ACAD11A0A0J9YXS1 Y_RNA.360-201ENST00000365512 102 ntBASIC1.89□□□□□ -2.11
NPHP3-ACAD11A0A0J9YXS1 snoU13.25-201ENST00000458945 104 ntBASIC1.89□□□□□ -2.11
NPHP3-ACAD11A0A0J9YXS1 RNU7-35P-201ENST00000517174 62 ntBASIC1.89□□□□□ -2.11
NPHP3-ACAD11A0A0J9YXS1 FAM71BP1-201ENST00000604431 523 ntBASIC1.89□□□□□ -2.11
NPHP3-ACAD11A0A0J9YXS1 AL627230.6-201ENST00000611129 280 ntBASIC1.89□□□□□ -2.11
NPHP3-ACAD11A0A0J9YXS1 Y_RNA.818-201ENST00000618813 71 ntBASIC1.89□□□□□ -2.11
NPHP3-ACAD11A0A0J9YXS1 SENP7-201ENST00000314261 4736 ntAPPRIS ALT2 TSL 1 (best) BASIC1.88□□□□□ -2.11
NPHP3-ACAD11A0A0J9YXS1 RNU6-1099P-201ENST00000363533 107 ntBASIC1.88□□□□□ -2.11
NPHP3-ACAD11A0A0J9YXS1 MIR30A-201ENST00000385092 71 ntBASIC1.88□□□□□ -2.11
NPHP3-ACAD11A0A0J9YXS1 RNU6-679P-201ENST00000391003 106 ntBASIC1.88□□□□□ -2.11
NPHP3-ACAD11A0A0J9YXS1 MIR1302-7-201ENST00000408841 72 ntBASIC1.88□□□□□ -2.11
NPHP3-ACAD11A0A0J9YXS1 RNU6-947P-201ENST00000516264 106 ntBASIC1.88□□□□□ -2.11
NPHP3-ACAD11A0A0J9YXS1 SNORA40.13-201ENST00000516379 120 ntBASIC1.88□□□□□ -2.11
NPHP3-ACAD11A0A0J9YXS1 RNU6-521P-201ENST00000516663 105 ntBASIC1.88□□□□□ -2.11
NPHP3-ACAD11A0A0J9YXS1 DEFB131E-201ENST00000532329 154 ntBASIC1.88□□□□□ -2.11
NPHP3-ACAD11A0A0J9YXS1 AP000942.3-201ENST00000603702 160 ntBASIC1.88□□□□□ -2.11
NPHP3-ACAD11A0A0J9YXS1 PRELID3BP2-201ENST00000605362 201 ntBASIC1.88□□□□□ -2.11
NPHP3-ACAD11A0A0J9YXS1 RNY3P2-201ENST00000362918 102 ntBASIC1.87□□□□□ -2.11
NPHP3-ACAD11A0A0J9YXS1 SNORA25.3-201ENST00000363205 127 ntBASIC1.87□□□□□ -2.11
NPHP3-ACAD11A0A0J9YXS1 RNU4-36P-201ENST00000364294 144 ntBASIC1.87□□□□□ -2.11
NPHP3-ACAD11A0A0J9YXS1 SNORD1A-201ENST00000364968 72 ntBASIC1.87□□□□□ -2.11
NPHP3-ACAD11A0A0J9YXS1 MIR577-201ENST00000385196 96 ntBASIC1.87□□□□□ -2.11
NPHP3-ACAD11A0A0J9YXS1 SNORA26.9-201ENST00000391322 122 ntBASIC1.87□□□□□ -2.11
NPHP3-ACAD11A0A0J9YXS1 RNY4P30-201ENST00000410216 95 ntBASIC1.87□□□□□ -2.11
NPHP3-ACAD11A0A0J9YXS1 RNU2-40P-201ENST00000410833 196 ntBASIC1.87□□□□□ -2.11
NPHP3-ACAD11A0A0J9YXS1 RPL31P63-201ENST00000422565 375 ntBASIC1.87□□□□□ -2.11
NPHP3-ACAD11A0A0J9YXS1 RPL23AP42-201ENST00000471152 471 ntBASIC1.87□□□□□ -2.11
NPHP3-ACAD11A0A0J9YXS1 MIR4694-201ENST00000578534 80 ntBASIC1.87□□□□□ -2.11
NPHP3-ACAD11A0A0J9YXS1 FAS-AS1.2-201ENST00000620386 170 ntBASIC1.87□□□□□ -2.11
NPHP3-ACAD11A0A0J9YXS1 RNU6-832P-201ENST00000363319 107 ntBASIC1.86□□□□□ -2.11
NPHP3-ACAD11A0A0J9YXS1 TRAJ11-201ENST00000390526 60 ntAPPRIS P1 BASIC1.86□□□□□ -2.11
NPHP3-ACAD11A0A0J9YXS1 AL591806.2-201ENST00000433122 173 ntBASIC1.86□□□□□ -2.11
NPHP3-ACAD11A0A0J9YXS1 RNA5SP233-201ENST00000459153 113 ntBASIC1.86□□□□□ -2.11
NPHP3-ACAD11A0A0J9YXS1 AC108752.1-201ENST00000484679 576 ntTSL 5 BASIC1.86□□□□□ -2.11
NPHP3-ACAD11A0A0J9YXS1 RNU7-79P-201ENST00000516082 62 ntBASIC1.86□□□□□ -2.11
NPHP3-ACAD11A0A0J9YXS1 SNORA44.1-201ENST00000517031 108 ntBASIC1.86□□□□□ -2.11
NPHP3-ACAD11A0A0J9YXS1 AC019176.1-201ENST00000518519 225 ntBASIC1.86□□□□□ -2.11
NPHP3-ACAD11A0A0J9YXS1 MIR5582-201ENST00000579697 68 ntBASIC1.86□□□□□ -2.11
NPHP3-ACAD11A0A0J9YXS1 AC008781.2-201ENST00000502205 2480 ntTSL 1 (best) BASIC1.85□□□□□ -2.11
NPHP3-ACAD11A0A0J9YXS1 SNORD115-35-201ENST00000365122 82 ntBASIC1.85□□□□□ -2.11
NPHP3-ACAD11A0A0J9YXS1 RNU6-1237P-201ENST00000384777 107 ntBASIC1.85□□□□□ -2.11
NPHP3-ACAD11A0A0J9YXS1 RNU6-1086P-201ENST00000410930 100 ntBASIC1.85□□□□□ -2.11
NPHP3-ACAD11A0A0J9YXS1 AC244023.1-201ENST00000426884 112 ntBASIC1.85□□□□□ -2.11
NPHP3-ACAD11A0A0J9YXS1 RPL39P39-201ENST00000455840 151 ntBASIC1.85□□□□□ -2.11
NPHP3-ACAD11A0A0J9YXS1 AC079140.2-201ENST00000506193 142 ntBASIC1.85□□□□□ -2.11
NPHP3-ACAD11A0A0J9YXS1 AC024614.2-201ENST00000577584 372 ntBASIC1.85□□□□□ -2.11
NPHP3-ACAD11A0A0J9YXS1 AC242498.1-201ENST00000604134 111 ntBASIC1.85□□□□□ -2.11
NPHP3-ACAD11A0A0J9YXS1 FSD1L-201ENST00000374707 7062 ntTSL 1 (best) BASIC1.85□□□□□ -2.11
NPHP3-ACAD11A0A0J9YXS1 MIR206-201ENST00000384872 86 ntBASIC1.84□□□□□ -2.11
NPHP3-ACAD11A0A0J9YXS1 SCARNA23-201ENST00000516060 130 ntBASIC1.84□□□□□ -2.11
NPHP3-ACAD11A0A0J9YXS1 RNU7-2P-201ENST00000516096 62 ntBASIC1.84□□□□□ -2.11
NPHP3-ACAD11A0A0J9YXS1 SNORA25.15-201ENST00000516487 89 ntBASIC1.84□□□□□ -2.11
NPHP3-ACAD11A0A0J9YXS1 MIR676-201ENST00000390702 67 ntBASIC1.83□□□□□ -2.12
NPHP3-ACAD11A0A0J9YXS1 RNU6-1018P-201ENST00000516577 106 ntBASIC1.83□□□□□ -2.12
NPHP3-ACAD11A0A0J9YXS1 SNORD67.1-201ENST00000516618 108 ntBASIC1.83□□□□□ -2.12
NPHP3-ACAD11A0A0J9YXS1 RNU6-158P-201ENST00000517104 100 ntBASIC1.83□□□□□ -2.12
NPHP3-ACAD11A0A0J9YXS1 AC009093.3-203ENST00000565800 121 ntTSL 2 BASIC1.83□□□□□ -2.12
NPHP3-ACAD11A0A0J9YXS1 SPTSSB-205ENST00000620149 231 ntAPPRIS P1 BASIC1.83□□□□□ -2.12
NPHP3-ACAD11A0A0J9YXS1 RNA5SP363-201ENST00000365072 115 ntBASIC1.82□□□□□ -2.12
NPHP3-ACAD11A0A0J9YXS1 RNU6-1201P-201ENST00000384227 107 ntBASIC1.82□□□□□ -2.12
NPHP3-ACAD11A0A0J9YXS1 RNU6-1307P-201ENST00000391012 103 ntBASIC1.82□□□□□ -2.12
NPHP3-ACAD11A0A0J9YXS1 Y_RNA.601-201ENST00000410500 113 ntBASIC1.82□□□□□ -2.12
NPHP3-ACAD11A0A0J9YXS1 AL365434.1-201ENST00000412362 380 ntTSL 3 BASIC1.82□□□□□ -2.12
NPHP3-ACAD11A0A0J9YXS1 MTATP8P2-201ENST00000435212 202 ntBASIC1.82□□□□□ -2.12
NPHP3-ACAD11A0A0J9YXS1 SNORD13-201ENST00000459299 104 ntBASIC1.82□□□□□ -2.12
NPHP3-ACAD11A0A0J9YXS1 AL133373.1-201ENST00000497098 94 ntBASIC1.82□□□□□ -2.12
NPHP3-ACAD11A0A0J9YXS1 RNU6-970P-201ENST00000516312 107 ntBASIC1.82□□□□□ -2.12
NPHP3-ACAD11A0A0J9YXS1 AP003716.2-201ENST00000528260 108 ntBASIC1.82□□□□□ -2.12
NPHP3-ACAD11A0A0J9YXS1 MIR3122-201ENST00000577243 73 ntBASIC1.82□□□□□ -2.12
NPHP3-ACAD11A0A0J9YXS1 PNRC2-204ENST00000579103 171 ntTSL 2 BASIC1.82□□□□□ -2.12
NPHP3-ACAD11A0A0J9YXS1 AL096840.1-201ENST00000603287 93 ntBASIC1.82□□□□□ -2.12
NPHP3-ACAD11A0A0J9YXS1 MIR7843-201ENST00000622274 79 ntBASIC1.82□□□□□ -2.12
NPHP3-ACAD11A0A0J9YXS1 Y_RNA.10-201ENST00000362371 110 ntBASIC1.81□□□□□ -2.12
NPHP3-ACAD11A0A0J9YXS1 RNU6-1313P-201ENST00000362622 102 ntBASIC1.81□□□□□ -2.12
NPHP3-ACAD11A0A0J9YXS1 SNORD33-201ENST00000362761 85 ntBASIC1.81□□□□□ -2.12
NPHP3-ACAD11A0A0J9YXS1 Y_RNA.93-201ENST00000363066 109 ntBASIC1.81□□□□□ -2.12
NPHP3-ACAD11A0A0J9YXS1 RNA5SP190-201ENST00000365222 118 ntBASIC1.81□□□□□ -2.12
Retrieved 100 of 98,524 protein–RNA pairs in 10.6 ms