Protein–RNA interactions for Protein: Q9Y6I4

USP3, Ubiquitin carboxyl-terminal hydrolase 3, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP3Q9Y6I4 Y_RNA.448-201ENST00000384185 108 ntBASIC2.61□□□□□ -1.99
USP3Q9Y6I4 SNORD38B-201ENST00000384690 67 ntBASIC2.61□□□□□ -1.99
USP3Q9Y6I4 MIR653-201ENST00000385279 96 ntBASIC2.61□□□□□ -1.99
USP3Q9Y6I4 AL359511.1-201ENST00000402970 211 ntBASIC2.61□□□□□ -1.99
USP3Q9Y6I4 MIR548G-201ENST00000408442 89 ntBASIC2.61□□□□□ -1.99
USP3Q9Y6I4 RNA5SP450-201ENST00000411206 102 ntBASIC2.61□□□□□ -1.99
USP3Q9Y6I4 RNU6-917P-201ENST00000516294 104 ntBASIC2.61□□□□□ -1.99
USP3Q9Y6I4 SNORD67.1-201ENST00000516618 108 ntBASIC2.61□□□□□ -1.99
USP3Q9Y6I4 MIR4513-201ENST00000581077 86 ntBASIC2.61□□□□□ -1.99
USP3Q9Y6I4 SNORD38B-202ENST00000625943 69 ntBASIC2.61□□□□□ -1.99
USP3Q9Y6I4 NFIA-AS1-206ENST00000630199 220 ntTSL 5 BASIC2.61□□□□□ -1.99
USP3Q9Y6I4 RNU4-82P-201ENST00000362443 140 ntBASIC2.6□□□□□ -1.99
USP3Q9Y6I4 VTRNA1-1-201ENST00000363120 99 ntBASIC2.6□□□□□ -1.99
USP3Q9Y6I4 RNU6-1244P-201ENST00000363614 108 ntBASIC2.6□□□□□ -1.99
USP3Q9Y6I4 RNA5SP48-201ENST00000363969 126 ntBASIC2.6□□□□□ -1.99
USP3Q9Y6I4 Y_RNA.247-201ENST00000364500 92 ntBASIC2.6□□□□□ -1.99
USP3Q9Y6I4 MIR34C-201ENST00000384831 77 ntBASIC2.6□□□□□ -1.99
USP3Q9Y6I4 RNU6-279P-201ENST00000391297 101 ntBASIC2.6□□□□□ -1.99
USP3Q9Y6I4 MIR1255A-201ENST00000408338 113 ntBASIC2.6□□□□□ -1.99
USP3Q9Y6I4 RPS12P2-201ENST00000439728 269 ntBASIC2.6□□□□□ -1.99
USP3Q9Y6I4 RNU7-137P-201ENST00000516788 62 ntBASIC2.6□□□□□ -1.99
USP3Q9Y6I4 MIR3935-201ENST00000583472 104 ntBASIC2.6□□□□□ -1.99
USP3Q9Y6I4 TRAJ36-201ENST00000614481 58 ntAPPRIS P1 BASIC2.6□□□□□ -1.99
USP3Q9Y6I4 MIR4251-201ENST00000635819 61 ntBASIC2.6□□□□□ -1.99
USP3Q9Y6I4 DYNC2H1-202ENST00000375735 13678 ntAPPRIS ALT1 TSL 1 (best) BASIC2.6□□□□□ -1.99
USP3Q9Y6I4 AC016717.2-201ENST00000609089 5141 ntBASIC2.59□□□□□ -1.99
USP3Q9Y6I4 TAB3-205ENST00000378933 6671 ntAPPRIS P1 TSL 1 (best) BASIC2.59□□□□□ -1.99
USP3Q9Y6I4 Y_RNA.567-201ENST00000384736 106 ntBASIC2.59□□□□□ -1.99
USP3Q9Y6I4 RNU7-48P-201ENST00000458875 63 ntBASIC2.59□□□□□ -1.99
USP3Q9Y6I4 COX7A2-206ENST00000472311 325 ntTSL 2 BASIC2.59□□□□□ -1.99
USP3Q9Y6I4 AC008892.1-201ENST00000511861 384 ntTSL 3 BASIC2.59□□□□□ -1.99
USP3Q9Y6I4 SNORA31.17-201ENST00000516953 127 ntBASIC2.59□□□□□ -1.99
USP3Q9Y6I4 SNORA31.25-201ENST00000517242 134 ntBASIC2.59□□□□□ -1.99
USP3Q9Y6I4 RNU6-86P-201ENST00000606534 107 ntBASIC2.59□□□□□ -1.99
USP3Q9Y6I4 DNAH14-210ENST00000439375 13548 ntAPPRIS P1 TSL 5 BASIC2.59□□□□□ -2
USP3Q9Y6I4 FSIP2-206ENST00000611759 3882 ntAPPRIS ALT2 TSL 5 BASIC2.59□□□□□ -2
USP3Q9Y6I4 BRDT-206ENST00000402388 3125 ntAPPRIS P3 TSL 1 (best) BASIC2.58□□□□□ -2
USP3Q9Y6I4 HMGN2P35-201ENST00000412164 270 ntBASIC2.58□□□□□ -2
USP3Q9Y6I4 RPL23AP94-201ENST00000512518 302 ntBASIC2.58□□□□□ -2
USP3Q9Y6I4 AP001362.1-201ENST00000625165 124 ntBASIC2.58□□□□□ -2
USP3Q9Y6I4 NEDD1-204ENST00000457368 3162 ntTSL 2 BASIC2.58□□□□□ -2
USP3Q9Y6I4 ATP11C-201ENST00000327569 6115 ntAPPRIS P3 TSL 1 (best) BASIC2.57□□□□□ -2
USP3Q9Y6I4 RNY1P4-201ENST00000384595 115 ntBASIC2.57□□□□□ -2
USP3Q9Y6I4 SNORA11.2-201ENST00000408318 127 ntBASIC2.57□□□□□ -2
USP3Q9Y6I4 RNA5SP225-201ENST00000410874 135 ntBASIC2.57□□□□□ -2
USP3Q9Y6I4 AC234781.5-201ENST00000508429 271 ntBASIC2.57□□□□□ -2
USP3Q9Y6I4 SNORA31.15-201ENST00000516771 132 ntBASIC2.57□□□□□ -2
USP3Q9Y6I4 AC099850.3-201ENST00000577678 321 ntTSL 3 BASIC2.57□□□□□ -2
USP3Q9Y6I4 LINC01790-201ENST00000447194 2852 ntTSL 2 BASIC2.56□□□□□ -2
USP3Q9Y6I4 RNU6-633P-201ENST00000362612 103 ntBASIC2.56□□□□□ -2
USP3Q9Y6I4 RNU6-509P-201ENST00000363519 107 ntBASIC2.56□□□□□ -2
USP3Q9Y6I4 MIR194-1-201ENST00000384892 85 ntBASIC2.56□□□□□ -2
USP3Q9Y6I4 RNU6-1321P-201ENST00000390905 107 ntBASIC2.56□□□□□ -2
USP3Q9Y6I4 RNU6-1307P-201ENST00000391012 103 ntBASIC2.56□□□□□ -2
USP3Q9Y6I4 RNA5SP237-201ENST00000410414 113 ntBASIC2.56□□□□□ -2
USP3Q9Y6I4 AC004965.1-201ENST00000413033 213 ntBASIC2.56□□□□□ -2
USP3Q9Y6I4 AL161932.1-201ENST00000437408 146 ntBASIC2.56□□□□□ -2
USP3Q9Y6I4 RNU6-267P-201ENST00000516714 103 ntBASIC2.56□□□□□ -2
USP3Q9Y6I4 DEFB122-202ENST00000569013 197 ntBASIC2.56□□□□□ -2
USP3Q9Y6I4 AC008781.2-201ENST00000502205 2480 ntTSL 1 (best) BASIC2.56□□□□□ -2
USP3Q9Y6I4 RNU6-1125P-201ENST00000363601 107 ntBASIC2.55□□□□□ -2
USP3Q9Y6I4 Y_RNA.173-201ENST00000363776 113 ntBASIC2.55□□□□□ -2
USP3Q9Y6I4 RNU1-52P-201ENST00000384190 164 ntBASIC2.55□□□□□ -2
USP3Q9Y6I4 RNU6-480P-201ENST00000384332 107 ntBASIC2.55□□□□□ -2
USP3Q9Y6I4 Y_RNA.607-201ENST00000410597 98 ntBASIC2.55□□□□□ -2
USP3Q9Y6I4 AL035078.1-202ENST00000531627 413 ntTSL 2 BASIC2.55□□□□□ -2
USP3Q9Y6I4 MIR548AO-201ENST00000579992 96 ntBASIC2.55□□□□□ -2
USP3Q9Y6I4 SIRT1-203ENST00000406900 3295 ntTSL 2 BASIC2.55□□□□□ -2
USP3Q9Y6I4 RPL31P63-201ENST00000422565 375 ntBASIC2.54□□□□□ -2
USP3Q9Y6I4 SPINT5P-201ENST00000448174 155 ntBASIC2.54□□□□□ -2
USP3Q9Y6I4 MIR3670-2-201ENST00000582974 65 ntBASIC2.54□□□□□ -2
USP3Q9Y6I4 MIR3670-1-201ENST00000584160 65 ntBASIC2.54□□□□□ -2
USP3Q9Y6I4 MIR3670-3-201ENST00000584855 65 ntBASIC2.54□□□□□ -2
USP3Q9Y6I4 AL357312.1-201ENST00000603879 298 ntBASIC2.54□□□□□ -2
USP3Q9Y6I4 MIR3670-4-201ENST00000612260 65 ntBASIC2.54□□□□□ -2
USP3Q9Y6I4 MIR1291-201ENST00000627649 87 ntBASIC2.54□□□□□ -2
USP3Q9Y6I4 PCM1-222ENST00000524226 5955 ntTSL 1 (best) BASIC2.54□□□□□ -2
USP3Q9Y6I4 BRCA1-202ENST00000354071 4497 ntTSL 1 (best) BASIC2.54□□□□□ -2
USP3Q9Y6I4 RNA5SP289-201ENST00000362332 137 ntBASIC2.53□□□□□ -2
USP3Q9Y6I4 DEFA7P-201ENST00000382676 285 ntBASIC2.53□□□□□ -2
USP3Q9Y6I4 Y_RNA.437-201ENST00000384113 113 ntBASIC2.53□□□□□ -2
USP3Q9Y6I4 Y_RNA.611-201ENST00000410682 108 ntBASIC2.53□□□□□ -2
USP3Q9Y6I4 AC133485.1-201ENST00000567176 124 ntBASIC2.53□□□□□ -2
USP3Q9Y6I4 SEPT14P17-201ENST00000617978 177 ntBASIC2.53□□□□□ -2
USP3Q9Y6I4 AC006160.2-201ENST00000637708 154 ntBASIC2.53□□□□□ -2
USP3Q9Y6I4 ASPM-202ENST00000367408 3747 ntTSL 1 (best) BASIC2.53□□□□□ -2
USP3Q9Y6I4 RNY1P13-201ENST00000365030 105 ntBASIC2.52□□□□□ -2.01
USP3Q9Y6I4 RNU6-787P-201ENST00000384032 107 ntBASIC2.52□□□□□ -2.01
USP3Q9Y6I4 AC026436.1-201ENST00000510537 270 ntBASIC2.52□□□□□ -2.01
USP3Q9Y6I4 AC019288.1-201ENST00000557918 224 ntBASIC2.52□□□□□ -2.01
USP3Q9Y6I4 MTND5P40-201ENST00000559945 246 ntBASIC2.52□□□□□ -2.01
USP3Q9Y6I4 AC141846.1-201ENST00000568348 142 ntBASIC2.52□□□□□ -2.01
USP3Q9Y6I4 AC067747.1-201ENST00000608026 250 ntBASIC2.52□□□□□ -2.01
USP3Q9Y6I4 AC012676.2-201ENST00000619258 186 ntBASIC2.52□□□□□ -2.01
USP3Q9Y6I4 LIG4-203ENST00000442234 3982 ntAPPRIS P1 TSL 1 (best) BASIC2.52□□□□□ -2.01
USP3Q9Y6I4 HSBP1P2-201ENST00000299671 229 ntBASIC2.51□□□□□ -2.01
USP3Q9Y6I4 MIR6073-201ENST00000352083 89 ntBASIC2.51□□□□□ -2.01
USP3Q9Y6I4 Y_RNA.4-201ENST00000362333 112 ntBASIC2.51□□□□□ -2.01
USP3Q9Y6I4 RNA5SP138-201ENST00000365098 114 ntBASIC2.51□□□□□ -2.01
USP3Q9Y6I4 RNU6-203P-201ENST00000384038 104 ntBASIC2.51□□□□□ -2.01
Retrieved 100 of 98,524 protein–RNA pairs in 123.5 ms