Protein–RNA interactions for Protein: Q9Y5I3

PCDHA1, Protocadherin alpha-1, humanhuman

Predictions only

Length 950 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA1Q9Y5I3 RNY1P6-201ENST00000384193 109 ntBASIC1.5□□□□□ -2.17
PCDHA1Q9Y5I3 RNU6-1319P-201ENST00000390855 104 ntBASIC1.5□□□□□ -2.17
PCDHA1Q9Y5I3 RNU6-747P-201ENST00000390928 104 ntBASIC1.5□□□□□ -2.17
PCDHA1Q9Y5I3 RNU6-241P-201ENST00000391148 104 ntBASIC1.5□□□□□ -2.17
PCDHA1Q9Y5I3 MIR1302-7-201ENST00000408841 72 ntBASIC1.5□□□□□ -2.17
PCDHA1Q9Y5I3 RNA5SP247-201ENST00000411181 105 ntBASIC1.5□□□□□ -2.17
PCDHA1Q9Y5I3 RNU6-177P-201ENST00000411257 104 ntBASIC1.5□□□□□ -2.17
PCDHA1Q9Y5I3 MIR3152-201ENST00000579801 74 ntBASIC1.5□□□□□ -2.17
PCDHA1Q9Y5I3 MIR3660-201ENST00000584845 100 ntBASIC1.5□□□□□ -2.17
PCDHA1Q9Y5I3 MIR8065-201ENST00000620577 100 ntBASIC1.5□□□□□ -2.17
PCDHA1Q9Y5I3 Z97988.1-201ENST00000637697 135 ntBASIC1.5□□□□□ -2.17
PCDHA1Q9Y5I3 Y_RNA.586-201ENST00000391146 98 ntBASIC1.49□□□□□ -2.17
PCDHA1Q9Y5I3 SNORA40.6-201ENST00000391153 128 ntBASIC1.49□□□□□ -2.17
PCDHA1Q9Y5I3 SNORA26.6-201ENST00000391256 115 ntBASIC1.49□□□□□ -2.17
PCDHA1Q9Y5I3 Y_RNA.757-201ENST00000578934 114 ntBASIC1.49□□□□□ -2.17
PCDHA1Q9Y5I3 AC108866.1-201ENST00000503073 2339 ntTSL 5 BASIC1.49□□□□□ -2.17
PCDHA1Q9Y5I3 RNU6-508P-201ENST00000363231 103 ntBASIC1.48□□□□□ -2.17
PCDHA1Q9Y5I3 Y_RNA.430-201ENST00000384081 110 ntBASIC1.48□□□□□ -2.17
PCDHA1Q9Y5I3 MIR758-201ENST00000390227 88 ntBASIC1.48□□□□□ -2.17
PCDHA1Q9Y5I3 AC013248.1-201ENST00000455092 232 ntTSL 3 BASIC1.48□□□□□ -2.17
PCDHA1Q9Y5I3 AC048334.1-201ENST00000477975 159 ntBASIC1.48□□□□□ -2.17
PCDHA1Q9Y5I3 MIR8070-201ENST00000616510 88 ntBASIC1.48□□□□□ -2.17
PCDHA1Q9Y5I3 MIR6717-201ENST00000622747 73 ntBASIC1.48□□□□□ -2.17
PCDHA1Q9Y5I3 AC021613.1-201ENST00000623880 111 ntBASIC1.48□□□□□ -2.17
PCDHA1Q9Y5I3 Y_RNA.280-201ENST00000364765 112 ntBASIC1.47□□□□□ -2.17
PCDHA1Q9Y5I3 MIR1185-1-201ENST00000408598 86 ntBASIC1.47□□□□□ -2.17
PCDHA1Q9Y5I3 SNORA31.2-201ENST00000516019 134 ntBASIC1.47□□□□□ -2.17
PCDHA1Q9Y5I3 MIR6078-201ENST00000611069 100 ntBASIC1.47□□□□□ -2.17
PCDHA1Q9Y5I3 SNORA25.3-201ENST00000363205 127 ntBASIC1.46□□□□□ -2.18
PCDHA1Q9Y5I3 SNORA1.1-201ENST00000364671 133 ntBASIC1.46□□□□□ -2.18
PCDHA1Q9Y5I3 MIR539-201ENST00000365690 78 ntBASIC1.46□□□□□ -2.18
PCDHA1Q9Y5I3 RNU6-893P-201ENST00000458841 100 ntBASIC1.46□□□□□ -2.18
PCDHA1Q9Y5I3 AC024382.1-201ENST00000520224 292 ntTSL 3 BASIC1.46□□□□□ -2.18
PCDHA1Q9Y5I3 AC004148.1-201ENST00000571506 398 ntTSL 5 BASIC1.46□□□□□ -2.18
PCDHA1Q9Y5I3 AC091895.1-201ENST00000624494 256 ntBASIC1.46□□□□□ -2.18
PCDHA1Q9Y5I3 FAM135A-203ENST00000370479 5930 ntTSL 1 (best) BASIC1.46□□□□□ -2.18
PCDHA1Q9Y5I3 ABCA5-201ENST00000392676 8220 ntAPPRIS P1 TSL 1 (best) BASIC1.45□□□□□ -2.18
PCDHA1Q9Y5I3 MIR103A2-201ENST00000362154 78 ntBASIC1.45□□□□□ -2.18
PCDHA1Q9Y5I3 RNU6-396P-201ENST00000365369 105 ntBASIC1.45□□□□□ -2.18
PCDHA1Q9Y5I3 RNU6-1190P-201ENST00000410811 104 ntBASIC1.45□□□□□ -2.18
PCDHA1Q9Y5I3 RPS3AP1-201ENST00000413190 320 ntBASIC1.45□□□□□ -2.18
PCDHA1Q9Y5I3 TMSB4XP3-201ENST00000445144 114 ntBASIC1.45□□□□□ -2.18
PCDHA1Q9Y5I3 RNU7-45P-201ENST00000459460 63 ntBASIC1.45□□□□□ -2.18
PCDHA1Q9Y5I3 IGLVVI-22-1-201ENST00000521183 211 ntBASIC1.45□□□□□ -2.18
PCDHA1Q9Y5I3 AC068338.1-201ENST00000565567 176 ntBASIC1.45□□□□□ -2.18
PCDHA1Q9Y5I3 Y_RNA.114-201ENST00000363265 113 ntBASIC1.44□□□□□ -2.18
PCDHA1Q9Y5I3 Y_RNA.226-201ENST00000364337 114 ntBASIC1.44□□□□□ -2.18
PCDHA1Q9Y5I3 RNU6-690P-201ENST00000365242 106 ntBASIC1.44□□□□□ -2.18
PCDHA1Q9Y5I3 RNU6-81P-201ENST00000365608 104 ntBASIC1.44□□□□□ -2.18
PCDHA1Q9Y5I3 AC073127.1-201ENST00000447336 333 ntTSL 3 BASIC1.44□□□□□ -2.18
PCDHA1Q9Y5I3 MIR2115-201ENST00000516657 100 ntBASIC1.44□□□□□ -2.18
PCDHA1Q9Y5I3 HSPE1P19-201ENST00000603327 295 ntBASIC1.44□□□□□ -2.18
PCDHA1Q9Y5I3 MIR6841-201ENST00000637129 72 ntBASIC1.44□□□□□ -2.18
PCDHA1Q9Y5I3 GNPDA2-204ENST00000509756 5382 ntAPPRIS ALT1 TSL 1 (best) BASIC1.43□□□□□ -2.18
PCDHA1Q9Y5I3 AL161722.3-201ENST00000605789 2983 ntBASIC1.43□□□□□ -2.18
PCDHA1Q9Y5I3 RNU6-647P-201ENST00000364243 107 ntBASIC1.43□□□□□ -2.18
PCDHA1Q9Y5I3 RNU6-53P-201ENST00000365367 106 ntBASIC1.43□□□□□ -2.18
PCDHA1Q9Y5I3 Y_RNA.354-201ENST00000365448 111 ntBASIC1.43□□□□□ -2.18
PCDHA1Q9Y5I3 SNORD38B-201ENST00000384690 67 ntBASIC1.43□□□□□ -2.18
PCDHA1Q9Y5I3 MT-TN-201ENST00000387400 73 ntBASIC1.43□□□□□ -2.18
PCDHA1Q9Y5I3 AC090844.1-201ENST00000422019 156 ntBASIC1.43□□□□□ -2.18
PCDHA1Q9Y5I3 HMGN1P33-201ENST00000432945 451 ntBASIC1.43□□□□□ -2.18
PCDHA1Q9Y5I3 AL158147.1-201ENST00000443970 75 ntBASIC1.43□□□□□ -2.18
PCDHA1Q9Y5I3 SNORD38B-202ENST00000625943 69 ntBASIC1.43□□□□□ -2.18
PCDHA1Q9Y5I3 SNORA25.9-201ENST00000365087 128 ntBASIC1.42□□□□□ -2.18
PCDHA1Q9Y5I3 Y_RNA.363-201ENST00000365529 113 ntBASIC1.42□□□□□ -2.18
PCDHA1Q9Y5I3 SNORD26-201ENST00000384147 75 ntBASIC1.42□□□□□ -2.18
PCDHA1Q9Y5I3 RNU6-602P-201ENST00000411155 105 ntBASIC1.42□□□□□ -2.18
PCDHA1Q9Y5I3 POLR2J4-204ENST00000418424 324 ntBASIC1.42□□□□□ -2.18
PCDHA1Q9Y5I3 RNU6-240P-201ENST00000516098 97 ntBASIC1.42□□□□□ -2.18
PCDHA1Q9Y5I3 AC133485.4-201ENST00000561835 220 ntBASIC1.42□□□□□ -2.18
PCDHA1Q9Y5I3 AC138907.4-201ENST00000570107 226 ntBASIC1.42□□□□□ -2.18
PCDHA1Q9Y5I3 MIR3910-1-201ENST00000580936 111 ntBASIC1.42□□□□□ -2.18
PCDHA1Q9Y5I3 MIR6516-201ENST00000630554 81 ntBASIC1.42□□□□□ -2.18
PCDHA1Q9Y5I3 SENP7-207ENST00000394095 4945 ntAPPRIS P3 TSL 1 (best) BASIC1.41□□□□□ -2.18
PCDHA1Q9Y5I3 PPP1R3A-201ENST00000284601 4384 ntAPPRIS P1 TSL 1 (best) BASIC1.41□□□□□ -2.18
PCDHA1Q9Y5I3 Y_RNA.294-201ENST00000364916 102 ntBASIC1.41□□□□□ -2.18
PCDHA1Q9Y5I3 SNORA80D-201ENST00000384488 135 ntBASIC1.41□□□□□ -2.18
PCDHA1Q9Y5I3 MIR1287-201ENST00000408492 90 ntBASIC1.41□□□□□ -2.18
PCDHA1Q9Y5I3 RNU6-613P-201ENST00000410412 108 ntBASIC1.41□□□□□ -2.18
PCDHA1Q9Y5I3 RNA5SP144-201ENST00000410846 116 ntBASIC1.41□□□□□ -2.18
PCDHA1Q9Y5I3 RNU5E-3P-201ENST00000515913 68 ntBASIC1.41□□□□□ -2.18
PCDHA1Q9Y5I3 MIR4305-201ENST00000583252 102 ntBASIC1.41□□□□□ -2.18
PCDHA1Q9Y5I3 AC108081.1-201ENST00000604358 221 ntBASIC1.41□□□□□ -2.18
PCDHA1Q9Y5I3 SEPT14P17-201ENST00000617978 177 ntBASIC1.41□□□□□ -2.18
PCDHA1Q9Y5I3 SNORA22.1-201ENST00000362701 134 ntBASIC1.4□□□□□ -2.19
PCDHA1Q9Y5I3 RNU4-16P-201ENST00000364737 141 ntBASIC1.4□□□□□ -2.19
PCDHA1Q9Y5I3 MIR499A-201ENST00000384903 122 ntBASIC1.4□□□□□ -2.19
PCDHA1Q9Y5I3 RNU6-910P-201ENST00000390844 107 ntBASIC1.4□□□□□ -2.19
PCDHA1Q9Y5I3 SNORD12-201ENST00000391002 90 ntBASIC1.4□□□□□ -2.19
PCDHA1Q9Y5I3 AL591704.2-201ENST00000421658 181 ntBASIC1.4□□□□□ -2.19
PCDHA1Q9Y5I3 AC244023.1-201ENST00000426884 112 ntBASIC1.4□□□□□ -2.19
PCDHA1Q9Y5I3 SNORD79.1-201ENST00000516069 84 ntBASIC1.4□□□□□ -2.19
PCDHA1Q9Y5I3 SNORA70.22-201ENST00000517160 124 ntBASIC1.4□□□□□ -2.19
PCDHA1Q9Y5I3 AC242498.1-201ENST00000604134 111 ntBASIC1.4□□□□□ -2.19
PCDHA1Q9Y5I3 AL137067.1-201ENST00000615933 120 ntBASIC1.4□□□□□ -2.19
PCDHA1Q9Y5I3 JMJD1C-212ENST00000639129 7901 ntAPPRIS ALT2 TSL 5 BASIC1.4□□□□□ -2.19
PCDHA1Q9Y5I3 Y_RNA.366-201ENST00000365540 102 ntBASIC1.39□□□□□ -2.19
PCDHA1Q9Y5I3 RNU6ATAC8P-201ENST00000408460 126 ntBASIC1.39□□□□□ -2.19
PCDHA1Q9Y5I3 Y_RNA.617-201ENST00000410920 90 ntBASIC1.39□□□□□ -2.19
Retrieved 100 of 98,524 protein–RNA pairs in 127 ms