Protein–RNA interactions for Protein: Q9Y566

SHANK1, SH3 and multiple ankyrin repeat domains protein 1, humanhuman

Predictions only

Length 2,161 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK1Q9Y566 NPPA-AS1_2.1-201ENST00000618496 149 ntBASIC0.43□□□□□ -2.34
SHANK1Q9Y566 Z97988.1-201ENST00000637697 135 ntBASIC0.43□□□□□ -2.34
SHANK1Q9Y566 C9orf84-204ENST00000394777 4955 ntAPPRIS ALT2 TSL 1 (best) BASIC0.43□□□□□ -2.34
SHANK1Q9Y566 RNU7-56P-201ENST00000458744 62 ntBASIC0.43□□□□□ -2.34
SHANK1Q9Y566 IGLVI-20-201ENST00000519296 130 ntBASIC0.43□□□□□ -2.34
SHANK1Q9Y566 AC097639.2-201ENST00000603159 172 ntBASIC0.43□□□□□ -2.34
SHANK1Q9Y566 Y_RNA.91-201ENST00000363042 107 ntBASIC0.42□□□□□ -2.34
SHANK1Q9Y566 RNU6-238P-201ENST00000363313 106 ntBASIC0.42□□□□□ -2.34
SHANK1Q9Y566 Y_RNA.199-201ENST00000364014 102 ntBASIC0.42□□□□□ -2.34
SHANK1Q9Y566 Y_RNA.299-201ENST00000364973 94 ntBASIC0.42□□□□□ -2.34
SHANK1Q9Y566 Y_RNA.571-201ENST00000384753 98 ntBASIC0.42□□□□□ -2.34
SHANK1Q9Y566 SNORD105-201ENST00000386910 85 ntBASIC0.42□□□□□ -2.34
SHANK1Q9Y566 RNU6ATAC33P-201ENST00000408647 126 ntBASIC0.42□□□□□ -2.34
SHANK1Q9Y566 MIR548H3-201ENST00000408771 118 ntBASIC0.42□□□□□ -2.34
SHANK1Q9Y566 RNA5SP25-201ENST00000410815 110 ntBASIC0.42□□□□□ -2.34
SHANK1Q9Y566 RNU2-64P-201ENST00000411315 191 ntBASIC0.42□□□□□ -2.34
SHANK1Q9Y566 AL606490.4-201ENST00000423117 127 ntBASIC0.42□□□□□ -2.34
SHANK1Q9Y566 SNRPGP8-201ENST00000454064 226 ntBASIC0.42□□□□□ -2.34
SHANK1Q9Y566 AC137770.1-201ENST00000504620 530 ntTSL 3 BASIC0.42□□□□□ -2.34
SHANK1Q9Y566 MTCO2P24-201ENST00000515611 426 ntBASIC0.42□□□□□ -2.34
SHANK1Q9Y566 SCARNA15.1-201ENST00000516384 125 ntBASIC0.42□□□□□ -2.34
SHANK1Q9Y566 AL662814.1-201ENST00000617364 121 ntBASIC0.42□□□□□ -2.34
SHANK1Q9Y566 Y_RNA.23-201ENST00000362496 106 ntBASIC0.42□□□□□ -2.34
SHANK1Q9Y566 Y_RNA.37-201ENST00000362606 108 ntBASIC0.42□□□□□ -2.34
SHANK1Q9Y566 Y_RNA.121-201ENST00000363309 113 ntBASIC0.42□□□□□ -2.34
SHANK1Q9Y566 RNU4-10P-201ENST00000364383 140 ntBASIC0.42□□□□□ -2.34
SHANK1Q9Y566 SNORD38B-201ENST00000384690 67 ntBASIC0.42□□□□□ -2.34
SHANK1Q9Y566 MIR100-201ENST00000385259 80 ntBASIC0.42□□□□□ -2.34
SHANK1Q9Y566 RNA5SP299-201ENST00000391203 116 ntBASIC0.42□□□□□ -2.34
SHANK1Q9Y566 RNA5SP261-201ENST00000410536 106 ntBASIC0.42□□□□□ -2.34
SHANK1Q9Y566 RNU7-62P-201ENST00000458856 62 ntBASIC0.42□□□□□ -2.34
SHANK1Q9Y566 AC107297.1-201ENST00000459991 176 ntBASIC0.42□□□□□ -2.34
SHANK1Q9Y566 RNU6-504P-201ENST00000516568 104 ntBASIC0.42□□□□□ -2.34
SHANK1Q9Y566 MIR2115-201ENST00000516657 100 ntBASIC0.42□□□□□ -2.34
SHANK1Q9Y566 AL117187.1-201ENST00000555482 181 ntBASIC0.42□□□□□ -2.34
SHANK1Q9Y566 MIR4282-201ENST00000583613 67 ntBASIC0.42□□□□□ -2.34
SHANK1Q9Y566 SNORD38B-202ENST00000625943 69 ntBASIC0.42□□□□□ -2.34
SHANK1Q9Y566 MIR5087-201ENST00000635826 76 ntBASIC0.42□□□□□ -2.34
SHANK1Q9Y566 Y_RNA.42-201ENST00000362660 108 ntBASIC0.41□□□□□ -2.34
SHANK1Q9Y566 RNU6-654P-201ENST00000364373 107 ntBASIC0.41□□□□□ -2.34
SHANK1Q9Y566 Y_RNA.351-201ENST00000365436 96 ntBASIC0.41□□□□□ -2.34
SHANK1Q9Y566 Y_RNA.410-201ENST00000383992 113 ntBASIC0.41□□□□□ -2.34
SHANK1Q9Y566 RNU6-1011P-201ENST00000384668 107 ntBASIC0.41□□□□□ -2.34
SHANK1Q9Y566 RNU6ATAC19P-201ENST00000408096 110 ntBASIC0.41□□□□□ -2.34
SHANK1Q9Y566 RNA5SP95-201ENST00000410319 137 ntBASIC0.41□□□□□ -2.34
SHANK1Q9Y566 RNU6-651P-201ENST00000411040 105 ntBASIC0.41□□□□□ -2.34
SHANK1Q9Y566 MIR5197-201ENST00000583721 112 ntBASIC0.41□□□□□ -2.34
SHANK1Q9Y566 Z83818.1-201ENST00000603584 150 ntBASIC0.41□□□□□ -2.34
SHANK1Q9Y566 U4.1-201ENST00000620349 87 ntBASIC0.41□□□□□ -2.34
SHANK1Q9Y566 AC023934.1-201ENST00000574529 2389 ntBASIC0.41□□□□□ -2.34
SHANK1Q9Y566 Y_RNA.214-201ENST00000364201 112 ntBASIC0.4□□□□□ -2.34
SHANK1Q9Y566 MIR573-201ENST00000384964 99 ntBASIC0.4□□□□□ -2.34
SHANK1Q9Y566 RNA5SP266-201ENST00000410273 108 ntBASIC0.4□□□□□ -2.34
SHANK1Q9Y566 RNU7-80P-201ENST00000459562 61 ntBASIC0.4□□□□□ -2.34
SHANK1Q9Y566 MIR548AO-201ENST00000579992 96 ntBASIC0.4□□□□□ -2.34
SHANK1Q9Y566 MIR302B-201ENST00000362188 73 ntBASIC0.4□□□□□ -2.35
SHANK1Q9Y566 Y_RNA.461-201ENST00000384263 103 ntBASIC0.4□□□□□ -2.35
SHANK1Q9Y566 SNORA51.10-201ENST00000384418 136 ntBASIC0.4□□□□□ -2.35
SHANK1Q9Y566 RNU4-70P-201ENST00000384579 139 ntBASIC0.4□□□□□ -2.35
SHANK1Q9Y566 MT-TF-201ENST00000387314 71 ntBASIC0.4□□□□□ -2.35
SHANK1Q9Y566 SNORD77.3-201ENST00000391113 65 ntBASIC0.4□□□□□ -2.35
SHANK1Q9Y566 RNU6-493P-201ENST00000391321 108 ntBASIC0.4□□□□□ -2.35
SHANK1Q9Y566 MIR18B-201ENST00000454574 71 ntBASIC0.4□□□□□ -2.35
SHANK1Q9Y566 AC002350.1-201ENST00000490759 375 ntBASIC0.4□□□□□ -2.35
SHANK1Q9Y566 AC131055.1-201ENST00000584626 316 ntBASIC0.4□□□□□ -2.35
SHANK1Q9Y566 AC021443.1-201ENST00000604478 211 ntBASIC0.4□□□□□ -2.35
SHANK1Q9Y566 MIR6516-201ENST00000630554 81 ntBASIC0.4□□□□□ -2.35
SHANK1Q9Y566 CEP290-203ENST00000547691 5968 ntTSL 1 (best) BASIC0.4□□□□□ -2.35
SHANK1Q9Y566 RNU6-1082P-201ENST00000364574 107 ntBASIC0.39□□□□□ -2.35
SHANK1Q9Y566 SNORA63C-201ENST00000364578 129 ntBASIC0.39□□□□□ -2.35
SHANK1Q9Y566 RNU6-740P-201ENST00000364734 105 ntBASIC0.39□□□□□ -2.35
SHANK1Q9Y566 RNU6-1292P-201ENST00000383856 107 ntBASIC0.39□□□□□ -2.35
SHANK1Q9Y566 MIR605-201ENST00000385078 83 ntBASIC0.39□□□□□ -2.35
SHANK1Q9Y566 RNU4-43P-201ENST00000410628 137 ntBASIC0.39□□□□□ -2.35
SHANK1Q9Y566 AC097716.1-201ENST00000509136 180 ntTSL 2 BASIC0.39□□□□□ -2.35
SHANK1Q9Y566 MIR6718-201ENST00000616153 80 ntBASIC0.39□□□□□ -2.35
SHANK1Q9Y566 MIR342-201ENST00000362212 99 ntBASIC0.39□□□□□ -2.35
SHANK1Q9Y566 Y_RNA.54-201ENST00000362766 105 ntBASIC0.39□□□□□ -2.35
SHANK1Q9Y566 Y_RNA.262-201ENST00000364641 102 ntBASIC0.39□□□□□ -2.35
SHANK1Q9Y566 RNU6-923P-201ENST00000364753 107 ntBASIC0.39□□□□□ -2.35
SHANK1Q9Y566 RPS27-201ENST00000368567 350 ntAPPRIS P1 TSL 1 (best) BASIC0.39□□□□□ -2.35
SHANK1Q9Y566 SNORA20-201ENST00000384662 132 ntBASIC0.39□□□□□ -2.35
SHANK1Q9Y566 RNU6-1237P-201ENST00000384777 107 ntBASIC0.39□□□□□ -2.35
SHANK1Q9Y566 RNU6-994P-201ENST00000410507 111 ntBASIC0.39□□□□□ -2.35
SHANK1Q9Y566 MIR1468-201ENST00000410600 86 ntBASIC0.39□□□□□ -2.35
SHANK1Q9Y566 SNRPGP12-201ENST00000449481 213 ntBASIC0.39□□□□□ -2.35
SHANK1Q9Y566 RNU6-958P-201ENST00000516995 106 ntBASIC0.39□□□□□ -2.35
SHANK1Q9Y566 MIR4744-201ENST00000581563 82 ntBASIC0.39□□□□□ -2.35
SHANK1Q9Y566 RNU6-94P-201ENST00000607728 107 ntBASIC0.39□□□□□ -2.35
SHANK1Q9Y566 uc_338.17-201ENST00000619633 179 ntBASIC0.39□□□□□ -2.35
SHANK1Q9Y566 Y_RNA.304-201ENST00000365011 112 ntBASIC0.38□□□□□ -2.35
SHANK1Q9Y566 Y_RNA.488-201ENST00000384403 102 ntBASIC0.38□□□□□ -2.35
SHANK1Q9Y566 MIR140-201ENST00000385282 100 ntBASIC0.38□□□□□ -2.35
SHANK1Q9Y566 MIR1302-3-201ENST00000408128 138 ntBASIC0.38□□□□□ -2.35
SHANK1Q9Y566 RNU5E-9P-201ENST00000411164 104 ntBASIC0.38□□□□□ -2.35
SHANK1Q9Y566 RNU7-185P-201ENST00000459215 60 ntBASIC0.38□□□□□ -2.35
SHANK1Q9Y566 SNORD123-201ENST00000459473 70 ntBASIC0.38□□□□□ -2.35
SHANK1Q9Y566 AC113410.1-201ENST00000505029 247 ntBASIC0.38□□□□□ -2.35
SHANK1Q9Y566 RNU6-1023P-201ENST00000516137 106 ntBASIC0.38□□□□□ -2.35
SHANK1Q9Y566 AC007991.2-201ENST00000520185 102 ntTSL 5 BASIC0.38□□□□□ -2.35
Retrieved 100 of 98,524 protein–RNA pairs in 191.5 ms