Protein–RNA interactions for Protein: Q9Y2N7

HIF3A, Hypoxia-inducible factor 3-alpha, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3AQ9Y2N7 5S_rRNA.3-201ENST00000517021 110 ntBASIC2.41□□□□□ -2.02
HIF3AQ9Y2N7 MIR4529-201ENST00000578110 78 ntBASIC2.41□□□□□ -2.02
HIF3AQ9Y2N7 MIR4635-201ENST00000583759 79 ntBASIC2.41□□□□□ -2.02
HIF3AQ9Y2N7 MIR4298-201ENST00000584380 73 ntBASIC2.41□□□□□ -2.02
HIF3AQ9Y2N7 RNU6-90P-201ENST00000606352 106 ntBASIC2.41□□□□□ -2.02
HIF3AQ9Y2N7 5S_rRNA.19-201ENST00000612131 110 ntBASIC2.41□□□□□ -2.02
HIF3AQ9Y2N7 5S_rRNA.18-201ENST00000621941 110 ntBASIC2.41□□□□□ -2.02
HIF3AQ9Y2N7 SLC8A1-AS1-230ENST00000627538 212 ntTSL 5 BASIC2.41□□□□□ -2.02
HIF3AQ9Y2N7 MIR4662A-201ENST00000637499 67 ntBASIC2.41□□□□□ -2.02
HIF3AQ9Y2N7 ENAM-201ENST00000396073 5679 ntAPPRIS P1 TSL 1 (best) BASIC2.41□□□□□ -2.02
HIF3AQ9Y2N7 AC007370.2-201ENST00000506899 2694 ntTSL 5 BASIC2.41□□□□□ -2.02
HIF3AQ9Y2N7 SNORA3A-201ENST00000364113 130 ntBASIC2.4□□□□□ -2.03
HIF3AQ9Y2N7 RNU1-112P-201ENST00000364401 164 ntBASIC2.4□□□□□ -2.03
HIF3AQ9Y2N7 RNA5SP138-201ENST00000365098 114 ntBASIC2.4□□□□□ -2.03
HIF3AQ9Y2N7 RNU6-524P-201ENST00000384270 107 ntBASIC2.4□□□□□ -2.03
HIF3AQ9Y2N7 RNU6ATAC41P-201ENST00000408600 126 ntBASIC2.4□□□□□ -2.03
HIF3AQ9Y2N7 RNU6-602P-201ENST00000411155 105 ntBASIC2.4□□□□□ -2.03
HIF3AQ9Y2N7 RNU7-137P-201ENST00000516788 62 ntBASIC2.4□□□□□ -2.03
HIF3AQ9Y2N7 HMSD-204ENST00000526932 162 ntTSL 3 BASIC2.4□□□□□ -2.03
HIF3AQ9Y2N7 PNRC2-204ENST00000579103 171 ntTSL 2 BASIC2.4□□□□□ -2.03
HIF3AQ9Y2N7 COMMD6-213ENST00000626103 120 ntTSL 5 BASIC2.4□□□□□ -2.03
HIF3AQ9Y2N7 MIR9-1-201ENST00000385198 89 ntBASIC2.39□□□□□ -2.03
HIF3AQ9Y2N7 RNA5SP450-201ENST00000411206 102 ntBASIC2.39□□□□□ -2.03
HIF3AQ9Y2N7 COX7A2-206ENST00000472311 325 ntTSL 2 BASIC2.39□□□□□ -2.03
HIF3AQ9Y2N7 SNORA74.3-201ENST00000517108 154 ntBASIC2.39□□□□□ -2.03
HIF3AQ9Y2N7 SNORA31.25-201ENST00000517242 134 ntBASIC2.39□□□□□ -2.03
HIF3AQ9Y2N7 MTND5P40-201ENST00000559945 246 ntBASIC2.39□□□□□ -2.03
HIF3AQ9Y2N7 CYP3A52P-201ENST00000563326 91 ntBASIC2.39□□□□□ -2.03
HIF3AQ9Y2N7 AC008133.2-201ENST00000624540 351 ntBASIC2.39□□□□□ -2.03
HIF3AQ9Y2N7 SNORA67.1-201ENST00000364749 141 ntBASIC2.38□□□□□ -2.03
HIF3AQ9Y2N7 Y_RNA.510-201ENST00000384511 114 ntBASIC2.38□□□□□ -2.03
HIF3AQ9Y2N7 MIR181B2-201ENST00000385004 89 ntBASIC2.38□□□□□ -2.03
HIF3AQ9Y2N7 RNU6-360P-201ENST00000390944 104 ntBASIC2.38□□□□□ -2.03
HIF3AQ9Y2N7 RNU6-613P-201ENST00000410412 108 ntBASIC2.38□□□□□ -2.03
HIF3AQ9Y2N7 RNU7-193P-201ENST00000516723 65 ntBASIC2.38□□□□□ -2.03
HIF3AQ9Y2N7 SNORA31.15-201ENST00000516771 132 ntBASIC2.38□□□□□ -2.03
HIF3AQ9Y2N7 AC079600.2-201ENST00000550076 130 ntBASIC2.38□□□□□ -2.03
HIF3AQ9Y2N7 AL513043.2-201ENST00000573941 143 ntBASIC2.38□□□□□ -2.03
HIF3AQ9Y2N7 AC012676.2-201ENST00000619258 186 ntBASIC2.38□□□□□ -2.03
HIF3AQ9Y2N7 GS1-279B7.1-204ENST00000641809 378 ntBASIC2.38□□□□□ -2.03
HIF3AQ9Y2N7 FAR1-204ENST00000532502 5820 ntTSL 2 BASIC2.38□□□□□ -2.03
HIF3AQ9Y2N7 ZNF680-202ENST00000447137 2159 ntTSL 2 BASIC2.37□□□□□ -2.03
HIF3AQ9Y2N7 STX7-202ENST00000367941 15791 ntAPPRIS P1 TSL 1 (best) BASIC2.37□□□□□ -2.03
HIF3AQ9Y2N7 Y_RNA.94-201ENST00000363068 106 ntBASIC2.37□□□□□ -2.03
HIF3AQ9Y2N7 SNORA80A-201ENST00000363922 136 ntBASIC2.37□□□□□ -2.03
HIF3AQ9Y2N7 AC073261.1-201ENST00000429409 121 ntBASIC2.37□□□□□ -2.03
HIF3AQ9Y2N7 RNU7-48P-201ENST00000458875 63 ntBASIC2.37□□□□□ -2.03
HIF3AQ9Y2N7 AC074131.1-201ENST00000514662 253 ntTSL 2 BASIC2.37□□□□□ -2.03
HIF3AQ9Y2N7 SNORA31.17-201ENST00000516953 127 ntBASIC2.37□□□□□ -2.03
HIF3AQ9Y2N7 MIR4764-201ENST00000580680 88 ntBASIC2.37□□□□□ -2.03
HIF3AQ9Y2N7 AC245884.12-201ENST00000615364 59 ntBASIC2.37□□□□□ -2.03
HIF3AQ9Y2N7 ST7-AS2_1.1-201ENST00000622900 72 ntBASIC2.37□□□□□ -2.03
HIF3AQ9Y2N7 Z97988.1-201ENST00000637697 135 ntBASIC2.37□□□□□ -2.03
HIF3AQ9Y2N7 Y_RNA.354-201ENST00000365448 111 ntBASIC2.36□□□□□ -2.03
HIF3AQ9Y2N7 RNU1-138P-201ENST00000384093 164 ntBASIC2.36□□□□□ -2.03
HIF3AQ9Y2N7 AL353795.2-201ENST00000431804 425 ntTSL 2 BASIC2.36□□□□□ -2.03
HIF3AQ9Y2N7 MIR548AO-201ENST00000579992 96 ntBASIC2.36□□□□□ -2.03
HIF3AQ9Y2N7 MIR5092-201ENST00000583139 88 ntBASIC2.36□□□□□ -2.03
HIF3AQ9Y2N7 NEDD4-205ENST00000506154 6751 ntTSL 1 (best) BASIC2.35□□□□□ -2.03
HIF3AQ9Y2N7 ARHGAP5-202ENST00000345122 9604 ntAPPRIS P3 TSL 5 BASIC2.35□□□□□ -2.03
HIF3AQ9Y2N7 RNU6-1123P-201ENST00000362347 106 ntBASIC2.35□□□□□ -2.03
HIF3AQ9Y2N7 SNORD114-10-201ENST00000363409 72 ntBASIC2.35□□□□□ -2.03
HIF3AQ9Y2N7 MIR519C-201ENST00000385053 87 ntBASIC2.35□□□□□ -2.03
HIF3AQ9Y2N7 RNA5SP210-201ENST00000391034 120 ntBASIC2.35□□□□□ -2.03
HIF3AQ9Y2N7 AC019129.1-201ENST00000403786 261 ntBASIC2.35□□□□□ -2.03
HIF3AQ9Y2N7 AL023284.1-201ENST00000403956 276 ntBASIC2.35□□□□□ -2.03
HIF3AQ9Y2N7 AC027119.1-201ENST00000440877 241 ntBASIC2.35□□□□□ -2.03
HIF3AQ9Y2N7 RNA5SP282-201ENST00000516355 108 ntBASIC2.35□□□□□ -2.03
HIF3AQ9Y2N7 MIR4712-201ENST00000583750 82 ntBASIC2.35□□□□□ -2.03
HIF3AQ9Y2N7 FAM13A-AS1_1.1-201ENST00000612555 119 ntBASIC2.35□□□□□ -2.03
HIF3AQ9Y2N7 AC010297.1-201ENST00000623948 149 ntBASIC2.35□□□□□ -2.03
HIF3AQ9Y2N7 WARS-244ENST00000627608 123 ntTSL 5 BASIC2.35□□□□□ -2.03
HIF3AQ9Y2N7 Y_RNA.173-201ENST00000363776 113 ntBASIC2.34□□□□□ -2.03
HIF3AQ9Y2N7 SNORD38.2-201ENST00000384470 69 ntBASIC2.34□□□□□ -2.03
HIF3AQ9Y2N7 MIR520C-201ENST00000385005 87 ntBASIC2.34□□□□□ -2.03
HIF3AQ9Y2N7 SNORD23.1-201ENST00000408212 104 ntBASIC2.34□□□□□ -2.03
HIF3AQ9Y2N7 AL161932.1-201ENST00000437408 146 ntBASIC2.34□□□□□ -2.03
HIF3AQ9Y2N7 RNU6-917P-201ENST00000516294 104 ntBASIC2.34□□□□□ -2.03
HIF3AQ9Y2N7 RNU7-43P-201ENST00000516554 64 ntBASIC2.34□□□□□ -2.03
HIF3AQ9Y2N7 Y_RNA.98-201ENST00000363109 102 ntBASIC2.33□□□□□ -2.04
HIF3AQ9Y2N7 RNY1P13-201ENST00000365030 105 ntBASIC2.33□□□□□ -2.04
HIF3AQ9Y2N7 MIR3670-2-201ENST00000582974 65 ntBASIC2.33□□□□□ -2.04
HIF3AQ9Y2N7 MIR3670-1-201ENST00000584160 65 ntBASIC2.33□□□□□ -2.04
HIF3AQ9Y2N7 MIR3670-3-201ENST00000584855 65 ntBASIC2.33□□□□□ -2.04
HIF3AQ9Y2N7 AL049779.4-201ENST00000604500 156 ntBASIC2.33□□□□□ -2.04
HIF3AQ9Y2N7 MIR3670-4-201ENST00000612260 65 ntBASIC2.33□□□□□ -2.04
HIF3AQ9Y2N7 AP001362.1-201ENST00000625165 124 ntBASIC2.33□□□□□ -2.04
HIF3AQ9Y2N7 HIF1A-201ENST00000323441 3555 ntTSL 1 (best) BASIC2.33□□□□□ -2.04
HIF3AQ9Y2N7 ATP11C-201ENST00000327569 6115 ntAPPRIS P3 TSL 1 (best) BASIC2.33□□□□□ -2.04
HIF3AQ9Y2N7 SNORA2B-201ENST00000384583 137 ntBASIC2.32□□□□□ -2.04
HIF3AQ9Y2N7 RNA5SP237-201ENST00000410414 113 ntBASIC2.32□□□□□ -2.04
HIF3AQ9Y2N7 AC011753.1-201ENST00000451001 220 ntBASIC2.32□□□□□ -2.04
HIF3AQ9Y2N7 AC093729.1-201ENST00000513074 128 ntBASIC2.32□□□□□ -2.04
HIF3AQ9Y2N7 ZMYM1-201ENST00000359858 4175 ntAPPRIS P1 TSL 1 (best) BASIC2.31□□□□□ -2.04
HIF3AQ9Y2N7 Y_RNA.168-201ENST00000363740 102 ntBASIC2.31□□□□□ -2.04
HIF3AQ9Y2N7 RNU6-447P-201ENST00000410293 104 ntBASIC2.31□□□□□ -2.04
HIF3AQ9Y2N7 RNU6-1118P-201ENST00000410382 104 ntBASIC2.31□□□□□ -2.04
HIF3AQ9Y2N7 RNU6-1076P-201ENST00000410397 104 ntBASIC2.31□□□□□ -2.04
HIF3AQ9Y2N7 RNU6-355P-201ENST00000410427 104 ntBASIC2.31□□□□□ -2.04
HIF3AQ9Y2N7 RNU6-791P-201ENST00000410467 104 ntBASIC2.31□□□□□ -2.04
Retrieved 100 of 98,524 protein–RNA pairs in 226.1 ms