Protein–RNA interactions for Protein: Q9UIU6

SIX4, Homeobox protein SIX4, humanhuman

Predictions only

Length 781 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX4Q9UIU6 SNORA31.2-201ENST00000516019 134 ntBASIC1.19□□□□□ -2.22
SIX4Q9UIU6 AP001328.1-201ENST00000528550 176 ntBASIC1.19□□□□□ -2.22
SIX4Q9UIU6 AC079466.2-201ENST00000585394 185 ntTSL 5 BASIC1.19□□□□□ -2.22
SIX4Q9UIU6 MIR302B-201ENST00000362188 73 ntBASIC1.18□□□□□ -2.22
SIX4Q9UIU6 Y_RNA.294-201ENST00000364916 102 ntBASIC1.18□□□□□ -2.22
SIX4Q9UIU6 SNORD18B-201ENST00000365659 72 ntBASIC1.18□□□□□ -2.22
SIX4Q9UIU6 AL603914.1-201ENST00000401964 204 ntBASIC1.18□□□□□ -2.22
SIX4Q9UIU6 MIR1185-1-201ENST00000408598 86 ntBASIC1.18□□□□□ -2.22
SIX4Q9UIU6 RNU6-257P-201ENST00000410238 98 ntBASIC1.18□□□□□ -2.22
SIX4Q9UIU6 MTND4LP9-201ENST00000427694 174 ntBASIC1.18□□□□□ -2.22
SIX4Q9UIU6 AC245047.7-201ENST00000440265 293 ntBASIC1.18□□□□□ -2.22
SIX4Q9UIU6 AC013248.1-201ENST00000455092 232 ntTSL 3 BASIC1.18□□□□□ -2.22
SIX4Q9UIU6 AL133373.1-201ENST00000497098 94 ntBASIC1.18□□□□□ -2.22
SIX4Q9UIU6 AL022345.2-201ENST00000606307 135 ntBASIC1.18□□□□□ -2.22
SIX4Q9UIU6 AL020996.3-201ENST00000606617 222 ntBASIC1.18□□□□□ -2.22
SIX4Q9UIU6 DLEU2_5.2-201ENST00000610606 84 ntBASIC1.18□□□□□ -2.22
SIX4Q9UIU6 AP001340.1-201ENST00000624405 217 ntBASIC1.18□□□□□ -2.22
SIX4Q9UIU6 MIR103A2-201ENST00000362154 78 ntBASIC1.17□□□□□ -2.22
SIX4Q9UIU6 Y_RNA.164-201ENST00000363709 102 ntBASIC1.17□□□□□ -2.22
SIX4Q9UIU6 Y_RNA.363-201ENST00000365529 113 ntBASIC1.17□□□□□ -2.22
SIX4Q9UIU6 RNY1P6-201ENST00000384193 109 ntBASIC1.17□□□□□ -2.22
SIX4Q9UIU6 MIR618-201ENST00000385287 98 ntBASIC1.17□□□□□ -2.22
SIX4Q9UIU6 RNU6-1054P-201ENST00000411293 104 ntBASIC1.17□□□□□ -2.22
SIX4Q9UIU6 MTATP6P21-201ENST00000440681 189 ntBASIC1.17□□□□□ -2.22
SIX4Q9UIU6 RNU5E-3P-201ENST00000515913 68 ntBASIC1.17□□□□□ -2.22
SIX4Q9UIU6 RN7SKP179-201ENST00000516126 217 ntBASIC1.17□□□□□ -2.22
SIX4Q9UIU6 RNU6-349P-201ENST00000362402 107 ntBASIC1.16□□□□□ -2.22
SIX4Q9UIU6 RNA5SP264-201ENST00000363115 107 ntBASIC1.16□□□□□ -2.22
SIX4Q9UIU6 SNORA25.8-201ENST00000364831 128 ntBASIC1.16□□□□□ -2.22
SIX4Q9UIU6 MIR613-201ENST00000385248 95 ntBASIC1.16□□□□□ -2.22
SIX4Q9UIU6 SNORA26.6-201ENST00000391256 115 ntBASIC1.16□□□□□ -2.22
SIX4Q9UIU6 MIR8065-201ENST00000620577 100 ntBASIC1.16□□□□□ -2.22
SIX4Q9UIU6 RNU6-704P-201ENST00000364162 103 ntBASIC1.15□□□□□ -2.23
SIX4Q9UIU6 SNORA40-201ENST00000388090 126 ntBASIC1.15□□□□□ -2.23
SIX4Q9UIU6 Y_RNA.586-201ENST00000391146 98 ntBASIC1.15□□□□□ -2.23
SIX4Q9UIU6 AL392103.1-201ENST00000447000 198 ntBASIC1.15□□□□□ -2.23
SIX4Q9UIU6 RNU6-240P-201ENST00000516098 97 ntBASIC1.15□□□□□ -2.23
SIX4Q9UIU6 MIR4295-201ENST00000585286 85 ntBASIC1.15□□□□□ -2.23
SIX4Q9UIU6 AC108081.1-201ENST00000604358 221 ntBASIC1.15□□□□□ -2.23
SIX4Q9UIU6 PRELID3BP2-201ENST00000605362 201 ntBASIC1.15□□□□□ -2.23
SIX4Q9UIU6 SNORD114-21-201ENST00000606412 72 ntBASIC1.15□□□□□ -2.23
SIX4Q9UIU6 U7.2-201ENST00000607576 63 ntBASIC1.15□□□□□ -2.23
SIX4Q9UIU6 MIR8055-201ENST00000610739 97 ntBASIC1.15□□□□□ -2.23
SIX4Q9UIU6 AC021613.1-201ENST00000623880 111 ntBASIC1.15□□□□□ -2.23
SIX4Q9UIU6 Z97988.1-201ENST00000637697 135 ntBASIC1.15□□□□□ -2.23
SIX4Q9UIU6 RNU6-654P-201ENST00000364373 107 ntBASIC1.14□□□□□ -2.23
SIX4Q9UIU6 SNORA1.1-201ENST00000364671 133 ntBASIC1.14□□□□□ -2.23
SIX4Q9UIU6 RNU6-690P-201ENST00000365242 106 ntBASIC1.14□□□□□ -2.23
SIX4Q9UIU6 SNORD50.2-201ENST00000365465 70 ntBASIC1.14□□□□□ -2.23
SIX4Q9UIU6 RNU6-910P-201ENST00000390844 107 ntBASIC1.14□□□□□ -2.23
SIX4Q9UIU6 SNORA75.2-201ENST00000391138 150 ntBASIC1.14□□□□□ -2.23
SIX4Q9UIU6 SNORA75.3-201ENST00000391231 150 ntBASIC1.14□□□□□ -2.23
SIX4Q9UIU6 MIR1285-1-201ENST00000408593 84 ntBASIC1.14□□□□□ -2.23
SIX4Q9UIU6 Y_RNA.692-201ENST00000516627 105 ntBASIC1.14□□□□□ -2.23
SIX4Q9UIU6 MIR3121-201ENST00000579680 77 ntBASIC1.14□□□□□ -2.23
SIX4Q9UIU6 MIR8070-201ENST00000616510 88 ntBASIC1.14□□□□□ -2.23
SIX4Q9UIU6 MIR6717-201ENST00000622747 73 ntBASIC1.14□□□□□ -2.23
SIX4Q9UIU6 CEP290-201ENST00000309041 7616 ntAPPRIS ALT1 TSL 5 BASIC1.14□□□□□ -2.23
SIX4Q9UIU6 LRRIQ1-202ENST00000393217 5394 ntAPPRIS P1 TSL 1 (best) BASIC1.13□□□□□ -2.23
SIX4Q9UIU6 MIR96-201ENST00000362288 78 ntBASIC1.13□□□□□ -2.23
SIX4Q9UIU6 RNA5SP327-201ENST00000362494 101 ntBASIC1.13□□□□□ -2.23
SIX4Q9UIU6 RNA5SP102-201ENST00000516865 106 ntBASIC1.13□□□□□ -2.23
SIX4Q9UIU6 AC024382.1-201ENST00000520224 292 ntTSL 3 BASIC1.13□□□□□ -2.23
SIX4Q9UIU6 AC011603.4-201ENST00000611325 277 ntBASIC1.13□□□□□ -2.23
SIX4Q9UIU6 MIR6516-201ENST00000630554 81 ntBASIC1.13□□□□□ -2.23
SIX4Q9UIU6 C9orf84-201ENST00000318737 4661 ntAPPRIS P3 TSL 1 (best) BASIC1.13□□□□□ -2.23
SIX4Q9UIU6 Y_RNA.114-201ENST00000363265 113 ntBASIC1.12□□□□□ -2.23
SIX4Q9UIU6 Y_RNA.280-201ENST00000364765 112 ntBASIC1.12□□□□□ -2.23
SIX4Q9UIU6 Y_RNA.366-201ENST00000365540 102 ntBASIC1.12□□□□□ -2.23
SIX4Q9UIU6 RNU6-1319P-201ENST00000390855 104 ntBASIC1.12□□□□□ -2.23
SIX4Q9UIU6 RNU6-747P-201ENST00000390928 104 ntBASIC1.12□□□□□ -2.23
SIX4Q9UIU6 RNU6-241P-201ENST00000391148 104 ntBASIC1.12□□□□□ -2.23
SIX4Q9UIU6 RNU6ATAC8P-201ENST00000408460 126 ntBASIC1.12□□□□□ -2.23
SIX4Q9UIU6 RNA5SP95-201ENST00000410319 137 ntBASIC1.12□□□□□ -2.23
SIX4Q9UIU6 RNU6-602P-201ENST00000411155 105 ntBASIC1.12□□□□□ -2.23
SIX4Q9UIU6 RNU6-177P-201ENST00000411257 104 ntBASIC1.12□□□□□ -2.23
SIX4Q9UIU6 AC087343.1-201ENST00000477341 475 ntBASIC1.12□□□□□ -2.23
SIX4Q9UIU6 RNU6-971P-201ENST00000516920 106 ntBASIC1.12□□□□□ -2.23
SIX4Q9UIU6 AC019288.1-201ENST00000557918 224 ntBASIC1.12□□□□□ -2.23
SIX4Q9UIU6 AC004148.1-201ENST00000571506 398 ntTSL 5 BASIC1.12□□□□□ -2.23
SIX4Q9UIU6 MIR6841-201ENST00000637129 72 ntBASIC1.12□□□□□ -2.23
SIX4Q9UIU6 MIR6767-201ENST00000637302 66 ntBASIC1.12□□□□□ -2.23
SIX4Q9UIU6 PPP1R3A-201ENST00000284601 4384 ntAPPRIS P1 TSL 1 (best) BASIC1.11□□□□□ -2.23
SIX4Q9UIU6 MIR337-201ENST00000362281 93 ntBASIC1.11□□□□□ -2.23
SIX4Q9UIU6 SNORD114-27-201ENST00000363766 70 ntBASIC1.11□□□□□ -2.23
SIX4Q9UIU6 POLR2J4-204ENST00000418424 324 ntBASIC1.11□□□□□ -2.23
SIX4Q9UIU6 RNU6-113P-201ENST00000516653 101 ntBASIC1.11□□□□□ -2.23
SIX4Q9UIU6 MIR2115-201ENST00000516657 100 ntBASIC1.11□□□□□ -2.23
SIX4Q9UIU6 AC133485.4-201ENST00000561835 220 ntBASIC1.11□□□□□ -2.23
SIX4Q9UIU6 AC138907.4-201ENST00000570107 226 ntBASIC1.11□□□□□ -2.23
SIX4Q9UIU6 Y_RNA.757-201ENST00000578934 114 ntBASIC1.11□□□□□ -2.23
SIX4Q9UIU6 TUG1_4.1-201ENST00000619464 181 ntBASIC1.11□□□□□ -2.23
SIX4Q9UIU6 RNU6-235P-201ENST00000362644 107 ntBASIC1.1□□□□□ -2.23
SIX4Q9UIU6 SNORA22.1-201ENST00000362701 134 ntBASIC1.1□□□□□ -2.23
SIX4Q9UIU6 Y_RNA.330-201ENST00000365230 109 ntBASIC1.1□□□□□ -2.23
SIX4Q9UIU6 RNU6-396P-201ENST00000365369 105 ntBASIC1.1□□□□□ -2.23
SIX4Q9UIU6 MIR1276-201ENST00000408707 83 ntBASIC1.1□□□□□ -2.23
SIX4Q9UIU6 RNA5SP144-201ENST00000410846 116 ntBASIC1.1□□□□□ -2.23
SIX4Q9UIU6 RPS3AP1-201ENST00000413190 320 ntBASIC1.1□□□□□ -2.23
SIX4Q9UIU6 SNORD79.1-201ENST00000516069 84 ntBASIC1.1□□□□□ -2.23
Retrieved 100 of 98,524 protein–RNA pairs in 122.6 ms