Protein–RNA interactions for Protein: Q9P1Q0

VPS54, Vacuolar protein sorting-associated protein 54, humanhuman

Predictions only

Length 977 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54Q9P1Q0 RNU6-1100P-201ENST00000410691 104 ntBASIC0.42□□□□□ -2.34
VPS54Q9P1Q0 RNU6-860P-201ENST00000410860 104 ntBASIC0.42□□□□□ -2.34
VPS54Q9P1Q0 RNU6-1217P-201ENST00000411276 104 ntBASIC0.42□□□□□ -2.34
VPS54Q9P1Q0 RNU6-785P-201ENST00000411324 104 ntBASIC0.42□□□□□ -2.34
VPS54Q9P1Q0 RNU7-102P-201ENST00000458948 62 ntBASIC0.42□□□□□ -2.34
VPS54Q9P1Q0 RNU7-156P-201ENST00000517214 74 ntBASIC0.42□□□□□ -2.34
VPS54Q9P1Q0 AC004148.1-201ENST00000571506 398 ntTSL 5 BASIC0.42□□□□□ -2.34
VPS54Q9P1Q0 U6.90-201ENST00000614007 104 ntBASIC0.42□□□□□ -2.34
VPS54Q9P1Q0 U6.70-201ENST00000620287 104 ntBASIC0.42□□□□□ -2.34
VPS54Q9P1Q0 MIR8062-201ENST00000621515 85 ntBASIC0.42□□□□□ -2.34
VPS54Q9P1Q0 MIR6717-201ENST00000622747 73 ntBASIC0.42□□□□□ -2.34
VPS54Q9P1Q0 MIR30D-201ENST00000362283 70 ntBASIC0.41□□□□□ -2.34
VPS54Q9P1Q0 RNU6-597P-201ENST00000365620 102 ntBASIC0.41□□□□□ -2.34
VPS54Q9P1Q0 Y_RNA.461-201ENST00000384263 103 ntBASIC0.41□□□□□ -2.34
VPS54Q9P1Q0 MIR563-201ENST00000385080 79 ntBASIC0.41□□□□□ -2.34
VPS54Q9P1Q0 SNORA26.6-201ENST00000391256 115 ntBASIC0.41□□□□□ -2.34
VPS54Q9P1Q0 Y_RNA.720-201ENST00000517166 92 ntBASIC0.41□□□□□ -2.34
VPS54Q9P1Q0 AP003072.1-201ENST00000531740 145 ntBASIC0.41□□□□□ -2.34
VPS54Q9P1Q0 MIR4643-201ENST00000577473 78 ntBASIC0.41□□□□□ -2.34
VPS54Q9P1Q0 MIR4282-201ENST00000583613 67 ntBASIC0.41□□□□□ -2.34
VPS54Q9P1Q0 AC097639.2-201ENST00000603159 172 ntBASIC0.41□□□□□ -2.34
VPS54Q9P1Q0 AC243829.6-201ENST00000612652 106 ntBASIC0.41□□□□□ -2.34
VPS54Q9P1Q0 Y_RNA.11-201ENST00000362375 109 ntBASIC0.4□□□□□ -2.35
VPS54Q9P1Q0 Y_RNA.422-201ENST00000384054 114 ntBASIC0.4□□□□□ -2.35
VPS54Q9P1Q0 RNU6-381P-201ENST00000391259 108 ntBASIC0.4□□□□□ -2.35
VPS54Q9P1Q0 MIR1257-201ENST00000408490 117 ntBASIC0.4□□□□□ -2.35
VPS54Q9P1Q0 ATP6V0E1P1-201ENST00000412537 226 ntBASIC0.4□□□□□ -2.35
VPS54Q9P1Q0 SNORA68.3-201ENST00000515906 83 ntBASIC0.4□□□□□ -2.35
VPS54Q9P1Q0 RNU6-653P-201ENST00000363074 106 ntBASIC0.39□□□□□ -2.35
VPS54Q9P1Q0 LINC00345-201ENST00000443679 285 ntTSL 5 BASIC0.39□□□□□ -2.35
VPS54Q9P1Q0 AL122017.1-202ENST00000570612 319 ntTSL 5 BASIC0.39□□□□□ -2.35
VPS54Q9P1Q0 AC090897.1-201ENST00000580909 226 ntBASIC0.39□□□□□ -2.35
VPS54Q9P1Q0 PVT1_3.1-201ENST00000620853 95 ntBASIC0.39□□□□□ -2.35
VPS54Q9P1Q0 U6.104-201ENST00000637979 90 ntBASIC0.39□□□□□ -2.35
VPS54Q9P1Q0 OMD-201ENST00000375550 2449 ntAPPRIS P1 TSL 1 (best) BASIC0.38□□□□□ -2.35
VPS54Q9P1Q0 Y_RNA.277-201ENST00000364754 102 ntBASIC0.38□□□□□ -2.35
VPS54Q9P1Q0 SNORA50A-201ENST00000384225 134 ntBASIC0.38□□□□□ -2.35
VPS54Q9P1Q0 Y_RNA.574-201ENST00000384766 95 ntBASIC0.38□□□□□ -2.35
VPS54Q9P1Q0 SNORD100-201ENST00000408573 76 ntBASIC0.38□□□□□ -2.35
VPS54Q9P1Q0 Y_RNA.618-201ENST00000410949 107 ntBASIC0.38□□□□□ -2.35
VPS54Q9P1Q0 AL162399.1-201ENST00000426090 130 ntTSL 3 BASIC0.38□□□□□ -2.35
VPS54Q9P1Q0 AL135790.1-201ENST00000427161 157 ntTSL 3 BASIC0.38□□□□□ -2.35
VPS54Q9P1Q0 AC002350.1-201ENST00000490759 375 ntBASIC0.38□□□□□ -2.35
VPS54Q9P1Q0 SNORD92-201ENST00000585078 85 ntBASIC0.38□□□□□ -2.35
VPS54Q9P1Q0 AL596211.1-201ENST00000569873 2277 ntBASIC0.38□□□□□ -2.35
VPS54Q9P1Q0 Y_RNA.54-201ENST00000362766 105 ntBASIC0.37□□□□□ -2.35
VPS54Q9P1Q0 Y_RNA.76-201ENST00000362931 109 ntBASIC0.37□□□□□ -2.35
VPS54Q9P1Q0 Y_RNA.176-201ENST00000363815 109 ntBASIC0.37□□□□□ -2.35
VPS54Q9P1Q0 RNU6-728P-201ENST00000365375 104 ntBASIC0.37□□□□□ -2.35
VPS54Q9P1Q0 RNU4-45P-201ENST00000365469 141 ntBASIC0.37□□□□□ -2.35
VPS54Q9P1Q0 VTRNA1-3-201ENST00000365645 89 ntBASIC0.37□□□□□ -2.35
VPS54Q9P1Q0 RNU6-472P-201ENST00000384299 107 ntBASIC0.37□□□□□ -2.35
VPS54Q9P1Q0 TRAJ2-201ENST00000390535 66 ntAPPRIS P1 BASIC0.37□□□□□ -2.35
VPS54Q9P1Q0 SEPT7P4-201ENST00000437076 306 ntBASIC0.37□□□□□ -2.35
VPS54Q9P1Q0 RNU7-80P-201ENST00000459562 61 ntBASIC0.37□□□□□ -2.35
VPS54Q9P1Q0 MIR5197-201ENST00000583721 112 ntBASIC0.37□□□□□ -2.35
VPS54Q9P1Q0 AC092634.7-201ENST00000621022 103 ntBASIC0.37□□□□□ -2.35
VPS54Q9P1Q0 IST1-227ENST00000626438 126 ntTSL 5 BASIC0.37□□□□□ -2.35
VPS54Q9P1Q0 AL589743.1-201ENST00000551932 2712 ntBASIC0.36□□□□□ -2.35
VPS54Q9P1Q0 Y_RNA.396-201ENST00000383949 103 ntBASIC0.36□□□□□ -2.35
VPS54Q9P1Q0 RNU6-1160P-201ENST00000384546 104 ntBASIC0.36□□□□□ -2.35
VPS54Q9P1Q0 Y_RNA.542-201ENST00000384641 111 ntBASIC0.36□□□□□ -2.35
VPS54Q9P1Q0 MIR216A-201ENST00000385063 110 ntBASIC0.36□□□□□ -2.35
VPS54Q9P1Q0 MT-TF-201ENST00000387314 71 ntBASIC0.36□□□□□ -2.35
VPS54Q9P1Q0 SNORA79-201ENST00000408376 140 ntBASIC0.36□□□□□ -2.35
VPS54Q9P1Q0 SNORD93-201ENST00000408813 74 ntBASIC0.36□□□□□ -2.35
VPS54Q9P1Q0 RNY3P16-201ENST00000516338 101 ntBASIC0.36□□□□□ -2.35
VPS54Q9P1Q0 AC006504.6-201ENST00000590142 199 ntBASIC0.36□□□□□ -2.35
VPS54Q9P1Q0 AC091932.4-201ENST00000623386 200 ntBASIC0.36□□□□□ -2.35
VPS54Q9P1Q0 Y_RNA.262-201ENST00000364641 102 ntBASIC0.35□□□□□ -2.35
VPS54Q9P1Q0 RNA5SP517-201ENST00000364724 117 ntBASIC0.35□□□□□ -2.35
VPS54Q9P1Q0 Y_RNA.326-201ENST00000365176 113 ntBASIC0.35□□□□□ -2.35
VPS54Q9P1Q0 RNU4-17P-201ENST00000365598 141 ntBASIC0.35□□□□□ -2.35
VPS54Q9P1Q0 RNU6ATAC42P-201ENST00000408637 95 ntBASIC0.35□□□□□ -2.35
VPS54Q9P1Q0 RNA5SP261-201ENST00000410536 106 ntBASIC0.35□□□□□ -2.35
VPS54Q9P1Q0 AC011921.3-201ENST00000605540 361 ntBASIC0.35□□□□□ -2.35
VPS54Q9P1Q0 AL442067.1-201ENST00000613261 223 ntBASIC0.35□□□□□ -2.35
VPS54Q9P1Q0 MIRLET7D-201ENST00000362263 87 ntBASIC0.34□□□□□ -2.36
VPS54Q9P1Q0 SNORD114-23-201ENST00000363536 72 ntBASIC0.34□□□□□ -2.36
VPS54Q9P1Q0 Y_RNA.292-201ENST00000364904 97 ntBASIC0.34□□□□□ -2.36
VPS54Q9P1Q0 RNA5SP117-201ENST00000365294 118 ntBASIC0.34□□□□□ -2.36
VPS54Q9P1Q0 Y_RNA.352-201ENST00000365439 102 ntBASIC0.34□□□□□ -2.36
VPS54Q9P1Q0 RNU6-1292P-201ENST00000383856 107 ntBASIC0.34□□□□□ -2.36
VPS54Q9P1Q0 RNU6-342P-201ENST00000384521 104 ntBASIC0.34□□□□□ -2.36
VPS54Q9P1Q0 MIR606-201ENST00000384851 96 ntBASIC0.34□□□□□ -2.36
VPS54Q9P1Q0 MIR548F4-201ENST00000408515 105 ntBASIC0.34□□□□□ -2.36
VPS54Q9P1Q0 RNA5SP237-201ENST00000410414 113 ntBASIC0.34□□□□□ -2.36
VPS54Q9P1Q0 AL136320.1-201ENST00000417273 430 ntTSL 3 BASIC0.34□□□□□ -2.36
VPS54Q9P1Q0 AL121914.1-201ENST00000450188 156 ntBASIC0.34□□□□□ -2.36
VPS54Q9P1Q0 SNORA25.12-201ENST00000516202 82 ntBASIC0.34□□□□□ -2.36
VPS54Q9P1Q0 RNU6-448P-201ENST00000517052 107 ntBASIC0.34□□□□□ -2.36
VPS54Q9P1Q0 AC008737.2-201ENST00000599446 118 ntBASIC0.34□□□□□ -2.36
VPS54Q9P1Q0 DLEU2_5.2-201ENST00000610606 84 ntBASIC0.34□□□□□ -2.36
VPS54Q9P1Q0 Y_RNA.454-201ENST00000384224 113 ntBASIC0.33□□□□□ -2.36
VPS54Q9P1Q0 Y_RNA.518-201ENST00000384552 113 ntBASIC0.33□□□□□ -2.36
VPS54Q9P1Q0 Y_RNA.617-201ENST00000410920 90 ntBASIC0.33□□□□□ -2.36
VPS54Q9P1Q0 EBAG9-207ENST00000531677 777 ntTSL 1 (best) BASIC0.33□□□□□ -2.36
VPS54Q9P1Q0 MIR3678-201ENST00000578455 94 ntBASIC0.33□□□□□ -2.36
VPS54Q9P1Q0 MIR3152-201ENST00000579801 74 ntBASIC0.33□□□□□ -2.36
VPS54Q9P1Q0 RNU6-103P-201ENST00000363686 107 ntBASIC0.32□□□□□ -2.36
Retrieved 100 of 98,524 protein–RNA pairs in 106.6 ms