Protein–RNA interactions for Protein: Q9NZR4

VSX1, Visual system homeobox 1, humanhuman

Predicted RBP Predictions only

Length 365 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VSX1Q9NZR4 RNU7-123P-201ENST00000515911 60 ntBASIC1.56□□□□□ -2.16
VSX1Q9NZR4 RNU6-919P-201ENST00000516731 104 ntBASIC1.56□□□□□ -2.16
VSX1Q9NZR4 CYP3A52P-201ENST00000563326 91 ntBASIC1.56□□□□□ -2.16
VSX1Q9NZR4 SNORD38B-202ENST00000625943 69 ntBASIC1.56□□□□□ -2.16
VSX1Q9NZR4 UGP2-230ENST00000626380 276 ntTSL 5 BASIC1.56□□□□□ -2.16
VSX1Q9NZR4 RNU6-215P-201ENST00000365169 102 ntBASIC1.55□□□□□ -2.16
VSX1Q9NZR4 SNORD116-21-201ENST00000384507 92 ntBASIC1.55□□□□□ -2.16
VSX1Q9NZR4 Y_RNA.525-201ENST00000384570 113 ntBASIC1.55□□□□□ -2.16
VSX1Q9NZR4 AC079760.1-201ENST00000456952 202 ntTSL 3 BASIC1.55□□□□□ -2.16
VSX1Q9NZR4 RNU7-113P-201ENST00000459273 62 ntBASIC1.55□□□□□ -2.16
VSX1Q9NZR4 AC005908.1-201ENST00000468701 347 ntBASIC1.55□□□□□ -2.16
VSX1Q9NZR4 AC103879.1-201ENST00000503093 255 ntTSL 2 BASIC1.55□□□□□ -2.16
VSX1Q9NZR4 AC113410.1-201ENST00000505029 247 ntBASIC1.55□□□□□ -2.16
VSX1Q9NZR4 SNORA31.4-201ENST00000516049 129 ntBASIC1.55□□□□□ -2.16
VSX1Q9NZR4 RNU6ATAC12P-201ENST00000516542 115 ntBASIC1.55□□□□□ -2.16
VSX1Q9NZR4 AC004812.1-201ENST00000540773 146 ntBASIC1.55□□□□□ -2.16
VSX1Q9NZR4 MIR3664-201ENST00000579074 99 ntBASIC1.55□□□□□ -2.16
VSX1Q9NZR4 MIR8081-201ENST00000611533 95 ntBASIC1.55□□□□□ -2.16
VSX1Q9NZR4 MBNL3-212ENST00000538204 11294 ntTSL 1 (best) BASIC1.55□□□□□ -2.16
VSX1Q9NZR4 CEP162-201ENST00000257766 5063 ntTSL 1 (best) BASIC1.54□□□□□ -2.16
VSX1Q9NZR4 RNU4-16P-201ENST00000364737 141 ntBASIC1.54□□□□□ -2.16
VSX1Q9NZR4 RNU6-1325P-201ENST00000364905 105 ntBASIC1.54□□□□□ -2.16
VSX1Q9NZR4 snoU13.15-201ENST00000459407 104 ntBASIC1.54□□□□□ -2.16
VSX1Q9NZR4 RNU7-41P-201ENST00000515917 61 ntBASIC1.54□□□□□ -2.16
VSX1Q9NZR4 SNORD33.1-201ENST00000516213 88 ntBASIC1.54□□□□□ -2.16
VSX1Q9NZR4 RNU2-35P-201ENST00000516446 142 ntBASIC1.54□□□□□ -2.16
VSX1Q9NZR4 MTND5P34-201ENST00000568888 325 ntBASIC1.54□□□□□ -2.16
VSX1Q9NZR4 RNU6-396P-201ENST00000365369 105 ntBASIC1.53□□□□□ -2.16
VSX1Q9NZR4 HFM1-201ENST00000370425 4931 ntAPPRIS P1 TSL 1 (best) BASIC1.53□□□□□ -2.16
VSX1Q9NZR4 U8.13-201ENST00000390842 128 ntBASIC1.53□□□□□ -2.16
VSX1Q9NZR4 SNORA11.2-201ENST00000408318 127 ntBASIC1.53□□□□□ -2.16
VSX1Q9NZR4 RNU6-902P-201ENST00000517212 91 ntBASIC1.53□□□□□ -2.16
VSX1Q9NZR4 HSPE1P19-201ENST00000603327 295 ntBASIC1.53□□□□□ -2.16
VSX1Q9NZR4 MIR583-201ENST00000384846 75 ntBASIC1.52□□□□□ -2.17
VSX1Q9NZR4 RNU4-69P-201ENST00000410677 143 ntBASIC1.52□□□□□ -2.17
VSX1Q9NZR4 AC245047.7-201ENST00000440265 293 ntBASIC1.52□□□□□ -2.17
VSX1Q9NZR4 AC009474.2-201ENST00000451383 136 ntBASIC1.52□□□□□ -2.17
VSX1Q9NZR4 RNU1-98P-201ENST00000458992 160 ntBASIC1.52□□□□□ -2.17
VSX1Q9NZR4 RPS23P4-201ENST00000487908 423 ntBASIC1.52□□□□□ -2.17
VSX1Q9NZR4 AC007012.1-201ENST00000567192 175 ntBASIC1.52□□□□□ -2.17
VSX1Q9NZR4 MIR548AO-201ENST00000579992 96 ntBASIC1.52□□□□□ -2.17
VSX1Q9NZR4 AL096861.1-201ENST00000610899 123 ntBASIC1.52□□□□□ -2.17
VSX1Q9NZR4 SNORD20-201ENST00000384550 80 ntBASIC1.51□□□□□ -2.17
VSX1Q9NZR4 RNU7-45P-201ENST00000459460 63 ntBASIC1.51□□□□□ -2.17
VSX1Q9NZR4 MIR2115-201ENST00000516657 100 ntBASIC1.51□□□□□ -2.17
VSX1Q9NZR4 AL512310.8-201ENST00000550183 120 ntBASIC1.51□□□□□ -2.17
VSX1Q9NZR4 MIR3192-201ENST00000584920 77 ntBASIC1.51□□□□□ -2.17
VSX1Q9NZR4 MIR6845-201ENST00000613182 61 ntBASIC1.51□□□□□ -2.17
VSX1Q9NZR4 AC084768.2-201ENST00000622736 221 ntBASIC1.51□□□□□ -2.17
VSX1Q9NZR4 Y_RNA.49-201ENST00000362714 112 ntBASIC1.5□□□□□ -2.17
VSX1Q9NZR4 Y_RNA.281-201ENST00000364774 94 ntBASIC1.5□□□□□ -2.17
VSX1Q9NZR4 MT-TN-201ENST00000387400 73 ntBASIC1.5□□□□□ -2.17
VSX1Q9NZR4 TRAJ47-201ENST00000390490 57 ntAPPRIS P1 BASIC1.5□□□□□ -2.17
VSX1Q9NZR4 SNORD77B-201ENST00000391112 67 ntBASIC1.5□□□□□ -2.17
VSX1Q9NZR4 RNU6-1054P-201ENST00000411293 104 ntBASIC1.5□□□□□ -2.17
VSX1Q9NZR4 AL512326.2-201ENST00000426359 151 ntBASIC1.5□□□□□ -2.17
VSX1Q9NZR4 RPL39P34-201ENST00000477141 156 ntBASIC1.5□□□□□ -2.17
VSX1Q9NZR4 RNU6-947P-201ENST00000516264 106 ntBASIC1.5□□□□□ -2.17
VSX1Q9NZR4 RNU6-589P-201ENST00000516485 107 ntBASIC1.5□□□□□ -2.17
VSX1Q9NZR4 Y_RNA.709-201ENST00000516952 92 ntBASIC1.5□□□□□ -2.17
VSX1Q9NZR4 MIR4255-201ENST00000579351 72 ntBASIC1.5□□□□□ -2.17
VSX1Q9NZR4 AL589743.1-201ENST00000551932 2712 ntBASIC1.5□□□□□ -2.17
VSX1Q9NZR4 CTDSPL2-202ENST00000558373 4255 ntTSL 1 (best) BASIC1.49□□□□□ -2.17
VSX1Q9NZR4 RNU6-602P-201ENST00000411155 105 ntBASIC1.49□□□□□ -2.17
VSX1Q9NZR4 snoU13.26-201ENST00000459452 105 ntBASIC1.49□□□□□ -2.17
VSX1Q9NZR4 RNA5SP33-201ENST00000516687 98 ntBASIC1.49□□□□□ -2.17
VSX1Q9NZR4 AC019176.1-201ENST00000518519 225 ntBASIC1.49□□□□□ -2.17
VSX1Q9NZR4 AP003716.2-201ENST00000528260 108 ntBASIC1.49□□□□□ -2.17
VSX1Q9NZR4 SPTSSB-205ENST00000620149 231 ntAPPRIS P1 BASIC1.49□□□□□ -2.17
VSX1Q9NZR4 MIR8065-201ENST00000620577 100 ntBASIC1.49□□□□□ -2.17
VSX1Q9NZR4 RNA5SP264-201ENST00000363115 107 ntBASIC1.48□□□□□ -2.17
VSX1Q9NZR4 MIR548D2-201ENST00000384955 97 ntBASIC1.48□□□□□ -2.17
VSX1Q9NZR4 MIR548A1-201ENST00000385041 97 ntBASIC1.48□□□□□ -2.17
VSX1Q9NZR4 RNU6-1190P-201ENST00000410811 104 ntBASIC1.48□□□□□ -2.17
VSX1Q9NZR4 MTATP6P29-201ENST00000415057 132 ntBASIC1.48□□□□□ -2.17
VSX1Q9NZR4 AL035461.1-201ENST00000421490 332 ntBASIC1.48□□□□□ -2.17
VSX1Q9NZR4 AC024382.1-201ENST00000520224 292 ntTSL 3 BASIC1.48□□□□□ -2.17
VSX1Q9NZR4 MIR4264-201ENST00000583520 66 ntBASIC1.48□□□□□ -2.17
VSX1Q9NZR4 AP000753.3-201ENST00000604083 169 ntBASIC1.48□□□□□ -2.17
VSX1Q9NZR4 Y_RNA.81-201ENST00000362997 102 ntBASIC1.47□□□□□ -2.17
VSX1Q9NZR4 RNU6-429P-201ENST00000384582 108 ntBASIC1.47□□□□□ -2.17
VSX1Q9NZR4 RNU6-955P-201ENST00000410497 104 ntBASIC1.47□□□□□ -2.17
VSX1Q9NZR4 RNU6-1086P-201ENST00000410930 100 ntBASIC1.47□□□□□ -2.17
VSX1Q9NZR4 RNU7-6P-201ENST00000516845 62 ntBASIC1.47□□□□□ -2.17
VSX1Q9NZR4 PRELID3BP2-201ENST00000605362 201 ntBASIC1.47□□□□□ -2.17
VSX1Q9NZR4 MIR6129-201ENST00000616087 109 ntBASIC1.47□□□□□ -2.17
VSX1Q9NZR4 MIR377-201ENST00000362145 69 ntBASIC1.46□□□□□ -2.18
VSX1Q9NZR4 SNORD115-19-201ENST00000363098 82 ntBASIC1.46□□□□□ -2.18
VSX1Q9NZR4 SNORD115-18-201ENST00000363293 82 ntBASIC1.46□□□□□ -2.18
VSX1Q9NZR4 Y_RNA.171-201ENST00000363760 102 ntBASIC1.46□□□□□ -2.18
VSX1Q9NZR4 SNORD115-17-201ENST00000364612 82 ntBASIC1.46□□□□□ -2.18
VSX1Q9NZR4 Y_RNA.309-201ENST00000365046 111 ntBASIC1.46□□□□□ -2.18
VSX1Q9NZR4 RNA5SP363-201ENST00000365072 115 ntBASIC1.46□□□□□ -2.18
VSX1Q9NZR4 RNU6-1104P-201ENST00000384723 104 ntBASIC1.46□□□□□ -2.18
VSX1Q9NZR4 AC063976.4-201ENST00000421971 163 ntBASIC1.46□□□□□ -2.18
VSX1Q9NZR4 HMGN1P33-201ENST00000432945 451 ntBASIC1.46□□□□□ -2.18
VSX1Q9NZR4 RN7SKP88-201ENST00000516847 250 ntBASIC1.46□□□□□ -2.18
VSX1Q9NZR4 RNU6-295P-201ENST00000516901 104 ntBASIC1.46□□□□□ -2.18
VSX1Q9NZR4 7SK.8-201ENST00000612110 250 ntBASIC1.46□□□□□ -2.18
VSX1Q9NZR4 7SK.11-201ENST00000615477 250 ntBASIC1.46□□□□□ -2.18
Retrieved 100 of 98,524 protein–RNA pairs in 218.3 ms