Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 MIR1263-201ENST00000408324 86 ntBASIC1.73□□□□□ -2.13
TRIM39Q9HCM9 RNU11-2P-201ENST00000516898 142 ntBASIC1.73□□□□□ -2.13
TRIM39Q9HCM9 AC024382.1-201ENST00000520224 292 ntTSL 3 BASIC1.73□□□□□ -2.13
TRIM39Q9HCM9 AL359881.1-201ENST00000602916 267 ntBASIC1.73□□□□□ -2.13
TRIM39Q9HCM9 U6.95-201ENST00000636931 70 ntBASIC1.73□□□□□ -2.13
TRIM39Q9HCM9 CTDSPL2-202ENST00000558373 4255 ntTSL 1 (best) BASIC1.72□□□□□ -2.13
TRIM39Q9HCM9 RNA5SP432-201ENST00000362480 116 ntBASIC1.72□□□□□ -2.13
TRIM39Q9HCM9 RNA5SP264-201ENST00000363115 107 ntBASIC1.72□□□□□ -2.13
TRIM39Q9HCM9 Y_RNA.298-201ENST00000364960 107 ntBASIC1.72□□□□□ -2.13
TRIM39Q9HCM9 RNU6ATAC2P-201ENST00000387943 126 ntBASIC1.72□□□□□ -2.13
TRIM39Q9HCM9 MIR764-201ENST00000390811 85 ntBASIC1.72□□□□□ -2.13
TRIM39Q9HCM9 MIR548I2-201ENST00000408348 149 ntBASIC1.72□□□□□ -2.13
TRIM39Q9HCM9 RNU6-1190P-201ENST00000410811 104 ntBASIC1.72□□□□□ -2.13
TRIM39Q9HCM9 HMGN1P33-201ENST00000432945 451 ntBASIC1.72□□□□□ -2.13
TRIM39Q9HCM9 AC073127.1-201ENST00000447336 333 ntTSL 3 BASIC1.72□□□□□ -2.13
TRIM39Q9HCM9 SNORA31.4-201ENST00000516049 129 ntBASIC1.72□□□□□ -2.13
TRIM39Q9HCM9 MIR2115-201ENST00000516657 100 ntBASIC1.72□□□□□ -2.13
TRIM39Q9HCM9 RNY4P20-201ENST00000516678 93 ntBASIC1.72□□□□□ -2.13
TRIM39Q9HCM9 RNU6-165P-201ENST00000517170 99 ntBASIC1.72□□□□□ -2.13
TRIM39Q9HCM9 IGHVII-40-1-201ENST00000517316 58 ntBASIC1.72□□□□□ -2.13
TRIM39Q9HCM9 AC025166.1-201ENST00000612411 163 ntBASIC1.72□□□□□ -2.13
TRIM39Q9HCM9 MIR8065-201ENST00000620577 100 ntBASIC1.72□□□□□ -2.13
TRIM39Q9HCM9 SNORA25.3-201ENST00000363205 127 ntBASIC1.71□□□□□ -2.14
TRIM39Q9HCM9 Y_RNA.213-201ENST00000364178 111 ntBASIC1.71□□□□□ -2.14
TRIM39Q9HCM9 RNU7-113P-201ENST00000459273 62 ntBASIC1.71□□□□□ -2.14
TRIM39Q9HCM9 SNORA25.15-201ENST00000516487 89 ntBASIC1.71□□□□□ -2.14
TRIM39Q9HCM9 MIR3618-201ENST00000580330 88 ntBASIC1.71□□□□□ -2.14
TRIM39Q9HCM9 MIR4769-201ENST00000584126 77 ntBASIC1.71□□□□□ -2.14
TRIM39Q9HCM9 HOTAIRM1_4.1-201ENST00000617934 102 ntBASIC1.71□□□□□ -2.14
TRIM39Q9HCM9 NPAT-201ENST00000278612 6117 ntAPPRIS P2 TSL 1 (best) BASIC1.71□□□□□ -2.14
TRIM39Q9HCM9 TEX15-203ENST00000638951 11341 ntAPPRIS P1 TSL 5 BASIC1.7□□□□□ -2.14
TRIM39Q9HCM9 Y_RNA.528-201ENST00000384575 108 ntBASIC1.7□□□□□ -2.14
TRIM39Q9HCM9 RNU6-1054P-201ENST00000411293 104 ntBASIC1.7□□□□□ -2.14
TRIM39Q9HCM9 COX6CP6-201ENST00000490840 228 ntBASIC1.7□□□□□ -2.14
TRIM39Q9HCM9 AC008781.2-201ENST00000502205 2480 ntTSL 1 (best) BASIC1.7□□□□□ -2.14
TRIM39Q9HCM9 RNU6-237P-201ENST00000515985 71 ntBASIC1.7□□□□□ -2.14
TRIM39Q9HCM9 RNU6-781P-201ENST00000516377 101 ntBASIC1.7□□□□□ -2.14
TRIM39Q9HCM9 MIR4255-201ENST00000579351 72 ntBASIC1.7□□□□□ -2.14
TRIM39Q9HCM9 AP000753.3-201ENST00000604083 169 ntBASIC1.7□□□□□ -2.14
TRIM39Q9HCM9 MIR8081-201ENST00000611533 95 ntBASIC1.7□□□□□ -2.14
TRIM39Q9HCM9 MIR6841-201ENST00000637129 72 ntBASIC1.7□□□□□ -2.14
TRIM39Q9HCM9 MIR3914-2-201ENST00000637339 95 ntBASIC1.7□□□□□ -2.14
TRIM39Q9HCM9 POLR2J4-204ENST00000418424 324 ntBASIC1.69□□□□□ -2.14
TRIM39Q9HCM9 RNU7-123P-201ENST00000515911 60 ntBASIC1.69□□□□□ -2.14
TRIM39Q9HCM9 IGKV1-22-201ENST00000524313 326 ntBASIC1.69□□□□□ -2.14
TRIM39Q9HCM9 MIR502-201ENST00000606349 86 ntBASIC1.69□□□□□ -2.14
TRIM39Q9HCM9 MBNL3-212ENST00000538204 11294 ntTSL 1 (best) BASIC1.68□□□□□ -2.14
TRIM39Q9HCM9 Y_RNA.261-201ENST00000364631 102 ntBASIC1.68□□□□□ -2.14
TRIM39Q9HCM9 RNA5SP205-201ENST00000364653 136 ntBASIC1.68□□□□□ -2.14
TRIM39Q9HCM9 Y_RNA.291-201ENST00000364886 113 ntBASIC1.68□□□□□ -2.14
TRIM39Q9HCM9 Y_RNA.299-201ENST00000364973 94 ntBASIC1.68□□□□□ -2.14
TRIM39Q9HCM9 RNA5SP363-201ENST00000365072 115 ntBASIC1.68□□□□□ -2.14
TRIM39Q9HCM9 SNORA22C-201ENST00000384614 134 ntBASIC1.68□□□□□ -2.14
TRIM39Q9HCM9 RNU6-602P-201ENST00000411155 105 ntBASIC1.68□□□□□ -2.14
TRIM39Q9HCM9 SNORA31.2-201ENST00000516019 134 ntBASIC1.68□□□□□ -2.14
TRIM39Q9HCM9 Y_RNA.531-201ENST00000384589 121 ntBASIC1.67□□□□□ -2.14
TRIM39Q9HCM9 MIRLET7F2-201ENST00000385277 83 ntBASIC1.67□□□□□ -2.14
TRIM39Q9HCM9 AC113410.1-201ENST00000505029 247 ntBASIC1.67□□□□□ -2.14
TRIM39Q9HCM9 RNU2-35P-201ENST00000516446 142 ntBASIC1.67□□□□□ -2.14
TRIM39Q9HCM9 AC007450.1-201ENST00000536492 188 ntTSL 3 BASIC1.67□□□□□ -2.14
TRIM39Q9HCM9 MIR4264-201ENST00000583520 66 ntBASIC1.67□□□□□ -2.14
TRIM39Q9HCM9 SKIL-204ENST00000458537 7182 ntAPPRIS P1 TSL 1 (best) BASIC1.67□□□□□ -2.14
TRIM39Q9HCM9 MTND5P18-201ENST00000445624 1801 ntBASIC1.66□□□□□ -2.14
TRIM39Q9HCM9 Y_RNA.198-201ENST00000364013 98 ntBASIC1.66□□□□□ -2.14
TRIM39Q9HCM9 Y_RNA.563-201ENST00000384707 108 ntBASIC1.66□□□□□ -2.14
TRIM39Q9HCM9 MT-TN-201ENST00000387400 73 ntBASIC1.66□□□□□ -2.14
TRIM39Q9HCM9 AC048334.1-201ENST00000477975 159 ntBASIC1.66□□□□□ -2.14
TRIM39Q9HCM9 AP003716.2-201ENST00000528260 108 ntBASIC1.66□□□□□ -2.14
TRIM39Q9HCM9 AC004812.1-201ENST00000540773 146 ntBASIC1.66□□□□□ -2.14
TRIM39Q9HCM9 AP000942.3-201ENST00000603702 160 ntBASIC1.66□□□□□ -2.14
TRIM39Q9HCM9 PRELID3BP2-201ENST00000605362 201 ntBASIC1.66□□□□□ -2.14
TRIM39Q9HCM9 AL353997.5-201ENST00000618886 171 ntBASIC1.66□□□□□ -2.14
TRIM39Q9HCM9 PPP1R3A-201ENST00000284601 4384 ntAPPRIS P1 TSL 1 (best) BASIC1.66□□□□□ -2.14
TRIM39Q9HCM9 RNA5SP190-201ENST00000365222 118 ntBASIC1.65□□□□□ -2.15
TRIM39Q9HCM9 RNU6-997P-201ENST00000384725 107 ntBASIC1.65□□□□□ -2.15
TRIM39Q9HCM9 RNU6-482P-201ENST00000391068 107 ntBASIC1.65□□□□□ -2.15
TRIM39Q9HCM9 5S_rRNA.2-201ENST00000391293 112 ntBASIC1.65□□□□□ -2.15
TRIM39Q9HCM9 snoU13.25-201ENST00000458945 104 ntBASIC1.65□□□□□ -2.15
TRIM39Q9HCM9 RNA5SP33-201ENST00000516687 98 ntBASIC1.65□□□□□ -2.15
TRIM39Q9HCM9 RNU6-834P-201ENST00000362367 110 ntBASIC1.64□□□□□ -2.15
TRIM39Q9HCM9 SNORD115-2-201ENST00000362842 82 ntBASIC1.64□□□□□ -2.15
TRIM39Q9HCM9 RNU1-17P-201ENST00000363022 152 ntBASIC1.64□□□□□ -2.15
TRIM39Q9HCM9 Y_RNA.171-201ENST00000363760 102 ntBASIC1.64□□□□□ -2.15
TRIM39Q9HCM9 RNA5SP99-201ENST00000364020 114 ntBASIC1.64□□□□□ -2.15
TRIM39Q9HCM9 SNORD115-20-201ENST00000365099 82 ntBASIC1.64□□□□□ -2.15
TRIM39Q9HCM9 Y_RNA.525-201ENST00000384570 113 ntBASIC1.64□□□□□ -2.15
TRIM39Q9HCM9 MIR1185-1-201ENST00000408598 86 ntBASIC1.64□□□□□ -2.15
TRIM39Q9HCM9 MIR1302-7-201ENST00000408841 72 ntBASIC1.64□□□□□ -2.15
TRIM39Q9HCM9 MIR3163-201ENST00000581592 73 ntBASIC1.64□□□□□ -2.15
TRIM39Q9HCM9 MIR548A3-201ENST00000385297 97 ntBASIC1.63□□□□□ -2.15
TRIM39Q9HCM9 RNU6-613P-201ENST00000410412 108 ntBASIC1.63□□□□□ -2.15
TRIM39Q9HCM9 RNA5SP237-201ENST00000410414 113 ntBASIC1.63□□□□□ -2.15
TRIM39Q9HCM9 AC090844.1-201ENST00000422019 156 ntBASIC1.63□□□□□ -2.15
TRIM39Q9HCM9 AL512326.2-201ENST00000426359 151 ntBASIC1.63□□□□□ -2.15
TRIM39Q9HCM9 AL670379.3-201ENST00000605040 251 ntBASIC1.63□□□□□ -2.15
TRIM39Q9HCM9 SEPT14P17-201ENST00000617978 177 ntBASIC1.63□□□□□ -2.15
TRIM39Q9HCM9 KIAA1107-201ENST00000370378 4622 ntTSL 5 BASIC1.62□□□□□ -2.15
TRIM39Q9HCM9 MIR377-201ENST00000362145 69 ntBASIC1.62□□□□□ -2.15
TRIM39Q9HCM9 SNORD77B-201ENST00000391112 67 ntBASIC1.62□□□□□ -2.15
TRIM39Q9HCM9 Y_RNA.630-201ENST00000411370 108 ntBASIC1.62□□□□□ -2.15
Retrieved 100 of 98,524 protein–RNA pairs in 326.9 ms