Protein–RNA interactions for Protein: Q9H9J4

USP42, Ubiquitin carboxyl-terminal hydrolase 42, humanhuman

Known RBP Predictions only

Length 1,324 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP42Q9H9J4 SNORA25.16-201ENST00000516741 121 ntBASIC-0.29□□□□□ -2.46
USP42Q9H9J4 Y_RNA.715-201ENST00000517082 110 ntBASIC-0.29□□□□□ -2.46
USP42Q9H9J4 AC107973.1-201ENST00000530249 576 ntTSL 4 BASIC-0.29□□□□□ -2.46
USP42Q9H9J4 MIR5692C2-201ENST00000577959 77 ntBASIC-0.29□□□□□ -2.46
USP42Q9H9J4 RPS29P30-201ENST00000600975 111 ntBASIC-0.29□□□□□ -2.46
USP42Q9H9J4 RNU4-10P-201ENST00000364383 140 ntBASIC-0.3□□□□□ -2.46
USP42Q9H9J4 Y_RNA.424-201ENST00000384063 103 ntBASIC-0.3□□□□□ -2.46
USP42Q9H9J4 MT-TL1-201ENST00000386347 75 ntBASIC-0.3□□□□□ -2.46
USP42Q9H9J4 RNA5SP163-201ENST00000410304 99 ntBASIC-0.3□□□□□ -2.46
USP42Q9H9J4 HSPE1P25-201ENST00000455484 251 ntBASIC-0.3□□□□□ -2.46
USP42Q9H9J4 SNORD4A-201ENST00000459174 72 ntBASIC-0.3□□□□□ -2.46
USP42Q9H9J4 RNU6-1046P-201ENST00000516538 107 ntBASIC-0.3□□□□□ -2.46
USP42Q9H9J4 SNORA40.14-201ENST00000516543 86 ntBASIC-0.3□□□□□ -2.46
USP42Q9H9J4 Y_RNA.697-201ENST00000516776 113 ntBASIC-0.3□□□□□ -2.46
USP42Q9H9J4 Y_RNA.718-201ENST00000517110 102 ntBASIC-0.3□□□□□ -2.46
USP42Q9H9J4 RNU6-365P-201ENST00000517113 106 ntBASIC-0.3□□□□□ -2.46
USP42Q9H9J4 MIR4724-201ENST00000579485 89 ntBASIC-0.3□□□□□ -2.46
USP42Q9H9J4 AC092794.1-201ENST00000612734 582 ntBASIC-0.3□□□□□ -2.46
USP42Q9H9J4 AC133104.2-201ENST00000615272 193 ntBASIC-0.3□□□□□ -2.46
USP42Q9H9J4 SYCP2-202ENST00000371001 5479 ntAPPRIS P2 TSL 1 (best) BASIC-0.3□□□□□ -2.46
USP42Q9H9J4 MIR367-201ENST00000362299 68 ntBASIC-0.31□□□□□ -2.46
USP42Q9H9J4 Y_RNA.91-201ENST00000363042 107 ntBASIC-0.31□□□□□ -2.46
USP42Q9H9J4 SNORD114-12-201ENST00000365400 75 ntBASIC-0.31□□□□□ -2.46
USP42Q9H9J4 Y_RNA.380-201ENST00000365663 111 ntBASIC-0.31□□□□□ -2.46
USP42Q9H9J4 Y_RNA.430-201ENST00000384081 110 ntBASIC-0.31□□□□□ -2.46
USP42Q9H9J4 AC108059.2-201ENST00000434626 151 ntBASIC-0.31□□□□□ -2.46
USP42Q9H9J4 FGF7P6-202ENST00000451282 293 ntBASIC-0.31□□□□□ -2.46
USP42Q9H9J4 RNU6-277P-201ENST00000516272 106 ntBASIC-0.31□□□□□ -2.46
USP42Q9H9J4 RNU6-320P-201ENST00000516511 106 ntBASIC-0.31□□□□□ -2.46
USP42Q9H9J4 AP003733.2-201ENST00000529409 171 ntBASIC-0.31□□□□□ -2.46
USP42Q9H9J4 SNORA70.25-201ENST00000612741 95 ntBASIC-0.31□□□□□ -2.46
USP42Q9H9J4 AL606534.2-204ENST00000635008 178 ntBASIC-0.31□□□□□ -2.46
USP42Q9H9J4 SNORD113-8-201ENST00000363497 74 ntBASIC-0.32□□□□□ -2.46
USP42Q9H9J4 SNORD95.1-201ENST00000364099 68 ntBASIC-0.32□□□□□ -2.46
USP42Q9H9J4 Y_RNA.259-201ENST00000364619 101 ntBASIC-0.32□□□□□ -2.46
USP42Q9H9J4 RNU6-1189P-201ENST00000383958 107 ntBASIC-0.32□□□□□ -2.46
USP42Q9H9J4 Y_RNA.410-201ENST00000383992 113 ntBASIC-0.32□□□□□ -2.46
USP42Q9H9J4 RNU6-949P-201ENST00000384040 107 ntBASIC-0.32□□□□□ -2.46
USP42Q9H9J4 Y_RNA.572-201ENST00000384757 98 ntBASIC-0.32□□□□□ -2.46
USP42Q9H9J4 AC137770.1-201ENST00000504620 530 ntTSL 3 BASIC-0.32□□□□□ -2.46
USP42Q9H9J4 MTRNR2L2-201ENST00000604882 87 ntBASIC-0.32□□□□□ -2.46
USP42Q9H9J4 AC135050.6-201ENST00000610813 528 ntTSL 3 BASIC-0.32□□□□□ -2.46
USP42Q9H9J4 Y_RNA.5-201ENST00000362334 102 ntBASIC-0.33□□□□□ -2.46
USP42Q9H9J4 RNU6-1272P-201ENST00000362776 107 ntBASIC-0.33□□□□□ -2.46
USP42Q9H9J4 SNORA63.5-201ENST00000363548 123 ntBASIC-0.33□□□□□ -2.46
USP42Q9H9J4 RNU6-726P-201ENST00000364680 107 ntBASIC-0.33□□□□□ -2.46
USP42Q9H9J4 Y_RNA.351-201ENST00000365436 96 ntBASIC-0.33□□□□□ -2.46
USP42Q9H9J4 SNORA1-201ENST00000384107 130 ntBASIC-0.33□□□□□ -2.46
USP42Q9H9J4 TRAJ48-201ENST00000390489 63 ntAPPRIS P1 BASIC-0.33□□□□□ -2.46
USP42Q9H9J4 PMCHL1-202ENST00000423102 261 ntBASIC-0.33□□□□□ -2.46
USP42Q9H9J4 AC068658.1-201ENST00000507509 388 ntTSL 2 BASIC-0.33□□□□□ -2.46
USP42Q9H9J4 MIR548AD-201ENST00000584780 82 ntBASIC-0.33□□□□□ -2.46
USP42Q9H9J4 AL670379.3-201ENST00000605040 251 ntBASIC-0.33□□□□□ -2.46
USP42Q9H9J4 MIR6841-201ENST00000637129 72 ntBASIC-0.33□□□□□ -2.46
USP42Q9H9J4 AL596211.1-201ENST00000569873 2277 ntBASIC-0.33□□□□□ -2.46
USP42Q9H9J4 MIR302B-201ENST00000362188 73 ntBASIC-0.34□□□□□ -2.46
USP42Q9H9J4 Y_RNA.39-201ENST00000362620 98 ntBASIC-0.34□□□□□ -2.46
USP42Q9H9J4 SNORA18.1-201ENST00000363418 128 ntBASIC-0.34□□□□□ -2.46
USP42Q9H9J4 Y_RNA.293-201ENST00000364908 93 ntBASIC-0.34□□□□□ -2.46
USP42Q9H9J4 Y_RNA.303-201ENST00000364998 94 ntBASIC-0.34□□□□□ -2.46
USP42Q9H9J4 RNU6-484P-201ENST00000384016 107 ntBASIC-0.34□□□□□ -2.46
USP42Q9H9J4 RNU6-876P-201ENST00000391295 104 ntBASIC-0.34□□□□□ -2.46
USP42Q9H9J4 Y_RNA.602-201ENST00000410535 92 ntBASIC-0.34□□□□□ -2.46
USP42Q9H9J4 Y_RNA.639-201ENST00000458981 102 ntBASIC-0.34□□□□□ -2.46
USP42Q9H9J4 SNORA20.3-201ENST00000516880 132 ntBASIC-0.34□□□□□ -2.46
USP42Q9H9J4 Y_RNA.713-201ENST00000517013 96 ntBASIC-0.34□□□□□ -2.46
USP42Q9H9J4 MIR3925-201ENST00000584674 77 ntBASIC-0.34□□□□□ -2.46
USP42Q9H9J4 AC007485.1-201ENST00000616755 206 ntBASIC-0.34□□□□□ -2.46
USP42Q9H9J4 AL162376.1-201ENST00000624117 175 ntBASIC-0.34□□□□□ -2.46
USP42Q9H9J4 RNA5SP275-201ENST00000363936 118 ntBASIC-0.35□□□□□ -2.46
USP42Q9H9J4 Y_RNA.634-201ENST00000364811 113 ntBASIC-0.35□□□□□ -2.46
USP42Q9H9J4 Y_RNA.304-201ENST00000365011 112 ntBASIC-0.35□□□□□ -2.46
USP42Q9H9J4 RNY1P13-201ENST00000365030 105 ntBASIC-0.35□□□□□ -2.46
USP42Q9H9J4 RNU1-115P-201ENST00000365329 160 ntBASIC-0.35□□□□□ -2.46
USP42Q9H9J4 RNU6-46P-201ENST00000383860 107 ntBASIC-0.35□□□□□ -2.46
USP42Q9H9J4 Y_RNA.387-201ENST00000383918 102 ntBASIC-0.35□□□□□ -2.46
USP42Q9H9J4 Y_RNA.569-201ENST00000384749 103 ntBASIC-0.35□□□□□ -2.46
USP42Q9H9J4 RNA5SP451-201ENST00000410588 110 ntBASIC-0.35□□□□□ -2.46
USP42Q9H9J4 Y_RNA.610-201ENST00000410681 103 ntBASIC-0.35□□□□□ -2.46
USP42Q9H9J4 NDUFAF4P4-201ENST00000454883 502 ntBASIC-0.35□□□□□ -2.46
USP42Q9H9J4 RNU7-152P-201ENST00000458982 64 ntBASIC-0.35□□□□□ -2.46
USP42Q9H9J4 RNU6-507P-201ENST00000516045 100 ntBASIC-0.35□□□□□ -2.46
USP42Q9H9J4 RNU6-180P-201ENST00000516697 61 ntBASIC-0.35□□□□□ -2.46
USP42Q9H9J4 AC040926.1-201ENST00000530195 238 ntBASIC-0.35□□□□□ -2.46
USP42Q9H9J4 AP005120.1-201ENST00000579321 352 ntTSL 3 BASIC-0.35□□□□□ -2.46
USP42Q9H9J4 AL008718.3-201ENST00000610217 321 ntBASIC-0.35□□□□□ -2.46
USP42Q9H9J4 CDKN3-212ENST00000620759 196 ntTSL 5 BASIC-0.35□□□□□ -2.46
USP42Q9H9J4 AC091932.4-201ENST00000623386 200 ntBASIC-0.35□□□□□ -2.46
USP42Q9H9J4 Y_RNA.49-201ENST00000362714 112 ntBASIC-0.36□□□□□ -2.47
USP42Q9H9J4 Y_RNA.229-201ENST00000364347 113 ntBASIC-0.36□□□□□ -2.47
USP42Q9H9J4 Y_RNA.252-201ENST00000364556 101 ntBASIC-0.36□□□□□ -2.47
USP42Q9H9J4 MIR526A2-201ENST00000390198 65 ntBASIC-0.36□□□□□ -2.47
USP42Q9H9J4 RNA5SP261-201ENST00000410536 106 ntBASIC-0.36□□□□□ -2.47
USP42Q9H9J4 AC096531.1-201ENST00000419107 107 ntBASIC-0.36□□□□□ -2.47
USP42Q9H9J4 RNU6-475P-201ENST00000516073 104 ntBASIC-0.36□□□□□ -2.47
USP42Q9H9J4 MIR8064-201ENST00000612863 90 ntBASIC-0.36□□□□□ -2.47
USP42Q9H9J4 AL138825.1-201ENST00000618587 192 ntBASIC-0.36□□□□□ -2.47
USP42Q9H9J4 Y_RNA.24-201ENST00000362508 103 ntBASIC-0.37□□□□□ -2.47
USP42Q9H9J4 Y_RNA.187-201ENST00000363918 113 ntBASIC-0.37□□□□□ -2.47
USP42Q9H9J4 RNU6-662P-201ENST00000384253 104 ntBASIC-0.37□□□□□ -2.47
Retrieved 100 of 98,524 protein–RNA pairs in 108.6 ms