Protein–RNA interactions for Protein: Q8NEL0

CCDC54, Coiled-coil domain-containing protein 54, humanhuman

Predictions only

Length 328 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC54Q8NEL0 UGP2-230ENST00000626380 276 ntTSL 5 BASIC0.25□□□□□ -2.37
CCDC54Q8NEL0 MIR335-201ENST00000362173 94 ntBASIC0.24□□□□□ -2.37
CCDC54Q8NEL0 Y_RNA.351-201ENST00000365436 96 ntBASIC0.24□□□□□ -2.37
CCDC54Q8NEL0 RNU6-639P-201ENST00000384074 107 ntBASIC0.24□□□□□ -2.37
CCDC54Q8NEL0 RNU6-364P-201ENST00000384387 107 ntBASIC0.24□□□□□ -2.37
CCDC54Q8NEL0 MT-TF-201ENST00000387314 71 ntBASIC0.24□□□□□ -2.37
CCDC54Q8NEL0 RNU6-1319P-201ENST00000390855 104 ntBASIC0.24□□□□□ -2.37
CCDC54Q8NEL0 RNU6-747P-201ENST00000390928 104 ntBASIC0.24□□□□□ -2.37
CCDC54Q8NEL0 RNU6-241P-201ENST00000391148 104 ntBASIC0.24□□□□□ -2.37
CCDC54Q8NEL0 Y_RNA.588-201ENST00000391254 102 ntBASIC0.24□□□□□ -2.37
CCDC54Q8NEL0 RNU6-447P-201ENST00000410293 104 ntBASIC0.24□□□□□ -2.37
CCDC54Q8NEL0 RNU6-1118P-201ENST00000410382 104 ntBASIC0.24□□□□□ -2.37
CCDC54Q8NEL0 RNU6-1076P-201ENST00000410397 104 ntBASIC0.24□□□□□ -2.37
CCDC54Q8NEL0 RNU6-355P-201ENST00000410427 104 ntBASIC0.24□□□□□ -2.37
CCDC54Q8NEL0 RNU6-791P-201ENST00000410467 104 ntBASIC0.24□□□□□ -2.37
CCDC54Q8NEL0 RNU6-705P-201ENST00000410601 104 ntBASIC0.24□□□□□ -2.37
CCDC54Q8NEL0 RNU6-1100P-201ENST00000410691 104 ntBASIC0.24□□□□□ -2.37
CCDC54Q8NEL0 RNU6-860P-201ENST00000410860 104 ntBASIC0.24□□□□□ -2.37
CCDC54Q8NEL0 RNA5SP247-201ENST00000411181 105 ntBASIC0.24□□□□□ -2.37
CCDC54Q8NEL0 RNU6-1217P-201ENST00000411276 104 ntBASIC0.24□□□□□ -2.37
CCDC54Q8NEL0 RNU6-785P-201ENST00000411324 104 ntBASIC0.24□□□□□ -2.37
CCDC54Q8NEL0 AL135790.1-201ENST00000427161 157 ntTSL 3 BASIC0.24□□□□□ -2.37
CCDC54Q8NEL0 RNU6-126P-201ENST00000516685 103 ntBASIC0.24□□□□□ -2.37
CCDC54Q8NEL0 SCARNA15-202ENST00000516881 127 ntBASIC0.24□□□□□ -2.37
CCDC54Q8NEL0 AC010177.1-201ENST00000547819 366 ntTSL 3 BASIC0.24□□□□□ -2.37
CCDC54Q8NEL0 AC133485.4-201ENST00000561835 220 ntBASIC0.24□□□□□ -2.37
CCDC54Q8NEL0 MIR4431-201ENST00000579990 94 ntBASIC0.24□□□□□ -2.37
CCDC54Q8NEL0 U6.90-201ENST00000614007 104 ntBASIC0.24□□□□□ -2.37
CCDC54Q8NEL0 AL662814.1-201ENST00000617364 121 ntBASIC0.24□□□□□ -2.37
CCDC54Q8NEL0 U6.70-201ENST00000620287 104 ntBASIC0.24□□□□□ -2.37
CCDC54Q8NEL0 MIR8062-201ENST00000621515 85 ntBASIC0.24□□□□□ -2.37
CCDC54Q8NEL0 SNORD118-201ENST00000363593 134 ntBASIC0.23□□□□□ -2.37
CCDC54Q8NEL0 RNU6-978P-201ENST00000364371 103 ntBASIC0.23□□□□□ -2.37
CCDC54Q8NEL0 RNU4-45P-201ENST00000365469 141 ntBASIC0.23□□□□□ -2.37
CCDC54Q8NEL0 VTRNA1-3-201ENST00000365645 89 ntBASIC0.23□□□□□ -2.37
CCDC54Q8NEL0 Y_RNA.396-201ENST00000383949 103 ntBASIC0.23□□□□□ -2.37
CCDC54Q8NEL0 MIR216A-201ENST00000385063 110 ntBASIC0.23□□□□□ -2.37
CCDC54Q8NEL0 AL162399.1-201ENST00000426090 130 ntTSL 3 BASIC0.23□□□□□ -2.37
CCDC54Q8NEL0 SNRPGP12-201ENST00000449481 213 ntBASIC0.23□□□□□ -2.37
CCDC54Q8NEL0 RNY3P16-201ENST00000516338 101 ntBASIC0.23□□□□□ -2.37
CCDC54Q8NEL0 RNU6-635P-201ENST00000516651 102 ntBASIC0.23□□□□□ -2.37
CCDC54Q8NEL0 RNU6-1258P-201ENST00000516911 111 ntBASIC0.23□□□□□ -2.37
CCDC54Q8NEL0 RNU6-448P-201ENST00000517052 107 ntBASIC0.23□□□□□ -2.37
CCDC54Q8NEL0 AL122017.1-202ENST00000570612 319 ntTSL 5 BASIC0.23□□□□□ -2.37
CCDC54Q8NEL0 AL365205.2-201ENST00000594586 68 ntBASIC0.23□□□□□ -2.37
CCDC54Q8NEL0 AC090625.1-201ENST00000357130 210 ntBASIC0.22□□□□□ -2.37
CCDC54Q8NEL0 Y_RNA.176-201ENST00000363815 109 ntBASIC0.22□□□□□ -2.37
CCDC54Q8NEL0 Y_RNA.199-201ENST00000364014 102 ntBASIC0.22□□□□□ -2.37
CCDC54Q8NEL0 Y_RNA.430-201ENST00000384081 110 ntBASIC0.22□□□□□ -2.37
CCDC54Q8NEL0 RNU6-42P-201ENST00000384165 107 ntBASIC0.22□□□□□ -2.37
CCDC54Q8NEL0 SNORA8.2-201ENST00000384372 139 ntBASIC0.22□□□□□ -2.37
CCDC54Q8NEL0 MIR644A-201ENST00000385262 94 ntBASIC0.22□□□□□ -2.37
CCDC54Q8NEL0 SNORA40.8-201ENST00000411034 126 ntBASIC0.22□□□□□ -2.37
CCDC54Q8NEL0 CLRN1-AS1.1-201ENST00000615643 79 ntBASIC0.22□□□□□ -2.37
CCDC54Q8NEL0 MIR6734-201ENST00000621166 68 ntBASIC0.22□□□□□ -2.37
CCDC54Q8NEL0 Y_RNA.13-201ENST00000362403 112 ntBASIC0.21□□□□□ -2.38
CCDC54Q8NEL0 RNU6-238P-201ENST00000363313 106 ntBASIC0.21□□□□□ -2.38
CCDC54Q8NEL0 SNORA26-201ENST00000391286 122 ntBASIC0.21□□□□□ -2.38
CCDC54Q8NEL0 Y_RNA.590-201ENST00000410140 107 ntBASIC0.21□□□□□ -2.38
CCDC54Q8NEL0 RNU4-43P-201ENST00000410628 137 ntBASIC0.21□□□□□ -2.38
CCDC54Q8NEL0 AP003072.1-201ENST00000531740 145 ntBASIC0.21□□□□□ -2.38
CCDC54Q8NEL0 MIR5093-201ENST00000583199 100 ntBASIC0.21□□□□□ -2.38
CCDC54Q8NEL0 uc_338.16-201ENST00000621804 95 ntBASIC0.21□□□□□ -2.38
CCDC54Q8NEL0 CEP290-203ENST00000547691 5968 ntTSL 1 (best) BASIC0.21□□□□□ -2.38
CCDC54Q8NEL0 AL589743.1-201ENST00000551932 2712 ntBASIC0.21□□□□□ -2.38
CCDC54Q8NEL0 AL596211.1-201ENST00000569873 2277 ntBASIC0.2□□□□□ -2.38
CCDC54Q8NEL0 Y_RNA.32-201ENST00000362589 110 ntBASIC0.2□□□□□ -2.38
CCDC54Q8NEL0 Y_RNA.326-201ENST00000365176 113 ntBASIC0.2□□□□□ -2.38
CCDC54Q8NEL0 RNU6-1292P-201ENST00000383856 107 ntBASIC0.2□□□□□ -2.38
CCDC54Q8NEL0 Y_RNA.461-201ENST00000384263 103 ntBASIC0.2□□□□□ -2.38
CCDC54Q8NEL0 Y_RNA.542-201ENST00000384641 111 ntBASIC0.2□□□□□ -2.38
CCDC54Q8NEL0 MIR1287-201ENST00000408492 90 ntBASIC0.2□□□□□ -2.38
CCDC54Q8NEL0 SNORD93-201ENST00000408813 74 ntBASIC0.2□□□□□ -2.38
CCDC54Q8NEL0 SNORA25.12-201ENST00000516202 82 ntBASIC0.2□□□□□ -2.38
CCDC54Q8NEL0 AC141846.1-201ENST00000568348 142 ntBASIC0.2□□□□□ -2.38
CCDC54Q8NEL0 MIR4711-201ENST00000578274 70 ntBASIC0.2□□□□□ -2.38
CCDC54Q8NEL0 SNORA4-201ENST00000584302 138 ntBASIC0.2□□□□□ -2.38
CCDC54Q8NEL0 AC044792.1-201ENST00000593294 196 ntBASIC0.2□□□□□ -2.38
CCDC54Q8NEL0 CCDC73-201ENST00000335185 3849 ntAPPRIS P2 TSL 2 BASIC0.19□□□□□ -2.38
CCDC54Q8NEL0 Y_RNA.277-201ENST00000364754 102 ntBASIC0.19□□□□□ -2.38
CCDC54Q8NEL0 RNU6-815P-201ENST00000384080 113 ntBASIC0.19□□□□□ -2.38
CCDC54Q8NEL0 Y_RNA.567-201ENST00000384736 106 ntBASIC0.19□□□□□ -2.38
CCDC54Q8NEL0 RNU4-83P-201ENST00000410863 133 ntBASIC0.19□□□□□ -2.38
CCDC54Q8NEL0 Y_RNA.618-201ENST00000410949 107 ntBASIC0.19□□□□□ -2.38
CCDC54Q8NEL0 SEPT7P4-201ENST00000437076 306 ntBASIC0.19□□□□□ -2.38
CCDC54Q8NEL0 AC137770.1-201ENST00000504620 530 ntTSL 3 BASIC0.19□□□□□ -2.38
CCDC54Q8NEL0 MTND1P19-201ENST00000511780 315 ntBASIC0.19□□□□□ -2.38
CCDC54Q8NEL0 MIR4491-201ENST00000581087 68 ntBASIC0.19□□□□□ -2.38
CCDC54Q8NEL0 MTND5P32-201ENST00000560711 1802 ntBASIC0.18□□□□□ -2.38
CCDC54Q8NEL0 Y_RNA.116-201ENST00000363292 103 ntBASIC0.18□□□□□ -2.38
CCDC54Q8NEL0 Y_RNA.226-201ENST00000364337 114 ntBASIC0.18□□□□□ -2.38
CCDC54Q8NEL0 RNU6-1327P-201ENST00000365302 105 ntBASIC0.18□□□□□ -2.38
CCDC54Q8NEL0 RNU4-17P-201ENST00000365598 141 ntBASIC0.18□□□□□ -2.38
CCDC54Q8NEL0 RNU6-1336P-201ENST00000383886 109 ntBASIC0.18□□□□□ -2.38
CCDC54Q8NEL0 Y_RNA.574-201ENST00000384766 95 ntBASIC0.18□□□□□ -2.38
CCDC54Q8NEL0 MIR518E-201ENST00000385252 88 ntBASIC0.18□□□□□ -2.38
CCDC54Q8NEL0 MIR936-201ENST00000401264 98 ntBASIC0.18□□□□□ -2.38
CCDC54Q8NEL0 RNU2-38P-201ENST00000410856 79 ntBASIC0.18□□□□□ -2.38
CCDC54Q8NEL0 SNORA31.14-201ENST00000516728 116 ntBASIC0.18□□□□□ -2.38
CCDC54Q8NEL0 Y_RNA.720-201ENST00000517166 92 ntBASIC0.18□□□□□ -2.38
Retrieved 100 of 98,524 protein–RNA pairs in 136.7 ms