Protein–RNA interactions for Protein: Q8NCR9

CLRN3, Clarin-3, humanhuman

Predictions only

Length 226 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN3Q8NCR9 AL157777.2-201ENST00000258070 137 ntBASIC1.46□□□□□ -2.18
CLRN3Q8NCR9 RNU6-654P-201ENST00000364373 107 ntBASIC1.46□□□□□ -2.18
CLRN3Q8NCR9 RNU6-22P-201ENST00000384355 107 ntBASIC1.46□□□□□ -2.18
CLRN3Q8NCR9 TRAJ3-201ENST00000390534 62 ntAPPRIS P1 BASIC1.46□□□□□ -2.18
CLRN3Q8NCR9 RNU6ATAC8P-201ENST00000408460 126 ntBASIC1.46□□□□□ -2.18
CLRN3Q8NCR9 RNA5SP237-201ENST00000410414 113 ntBASIC1.46□□□□□ -2.18
CLRN3Q8NCR9 AL512326.2-201ENST00000426359 151 ntBASIC1.46□□□□□ -2.18
CLRN3Q8NCR9 RNU7-62P-201ENST00000458856 62 ntBASIC1.46□□□□□ -2.18
CLRN3Q8NCR9 RNU1-98P-201ENST00000458992 160 ntBASIC1.46□□□□□ -2.18
CLRN3Q8NCR9 RNU7-107P-201ENST00000459121 61 ntBASIC1.46□□□□□ -2.18
CLRN3Q8NCR9 snoU13.2-201ENST00000459201 104 ntBASIC1.46□□□□□ -2.18
CLRN3Q8NCR9 UBE2DNL-203ENST00000474922 222 ntBASIC1.46□□□□□ -2.18
CLRN3Q8NCR9 RNU6-479P-201ENST00000516348 105 ntBASIC1.46□□□□□ -2.18
CLRN3Q8NCR9 RNA5SP33-201ENST00000516687 98 ntBASIC1.46□□□□□ -2.18
CLRN3Q8NCR9 MIR3618-201ENST00000580330 88 ntBASIC1.46□□□□□ -2.18
CLRN3Q8NCR9 RNA5SP327-201ENST00000362494 101 ntBASIC1.45□□□□□ -2.18
CLRN3Q8NCR9 SNORD113.3-201ENST00000364630 78 ntBASIC1.45□□□□□ -2.18
CLRN3Q8NCR9 Y_RNA.528-201ENST00000384575 108 ntBASIC1.45□□□□□ -2.18
CLRN3Q8NCR9 SNORA19-201ENST00000384737 128 ntBASIC1.45□□□□□ -2.18
CLRN3Q8NCR9 MIRLET7F2-201ENST00000385277 83 ntBASIC1.45□□□□□ -2.18
CLRN3Q8NCR9 SNORD12C-201ENST00000386307 89 ntBASIC1.45□□□□□ -2.18
CLRN3Q8NCR9 RNU6-205P-201ENST00000390858 107 ntBASIC1.45□□□□□ -2.18
CLRN3Q8NCR9 AL606753.1-201ENST00000427435 87 ntBASIC1.45□□□□□ -2.18
CLRN3Q8NCR9 U2.22-201ENST00000636441 106 ntBASIC1.45□□□□□ -2.18
CLRN3Q8NCR9 U6.95-201ENST00000636931 70 ntBASIC1.45□□□□□ -2.18
CLRN3Q8NCR9 ZGRF1-203ENST00000445203 6529 ntAPPRIS P1 TSL 5 BASIC1.45□□□□□ -2.18
CLRN3Q8NCR9 OSTN-201ENST00000339051 402 ntAPPRIS P1 TSL 1 (best) BASIC1.44□□□□□ -2.18
CLRN3Q8NCR9 Y_RNA.198-201ENST00000364013 98 ntBASIC1.44□□□□□ -2.18
CLRN3Q8NCR9 RNU6-580P-201ENST00000365159 107 ntBASIC1.44□□□□□ -2.18
CLRN3Q8NCR9 SNORA2B-201ENST00000384583 137 ntBASIC1.44□□□□□ -2.18
CLRN3Q8NCR9 MIR588-201ENST00000384900 83 ntBASIC1.44□□□□□ -2.18
CLRN3Q8NCR9 SNORD111-201ENST00000408139 94 ntBASIC1.44□□□□□ -2.18
CLRN3Q8NCR9 RPS23P4-201ENST00000487908 423 ntBASIC1.44□□□□□ -2.18
CLRN3Q8NCR9 RNU6-1258P-201ENST00000516911 111 ntBASIC1.44□□□□□ -2.18
CLRN3Q8NCR9 MIR1273D-201ENST00000577266 86 ntBASIC1.44□□□□□ -2.18
CLRN3Q8NCR9 C16orf97-206ENST00000622950 415 ntTSL 2 BASIC1.44□□□□□ -2.18
CLRN3Q8NCR9 AC064859.1-201ENST00000624741 174 ntBASIC1.44□□□□□ -2.18
CLRN3Q8NCR9 MIR3914-2-201ENST00000637339 95 ntBASIC1.44□□□□□ -2.18
CLRN3Q8NCR9 MIR449A-201ENST00000362113 91 ntBASIC1.43□□□□□ -2.18
CLRN3Q8NCR9 AC063976.4-201ENST00000421971 163 ntBASIC1.43□□□□□ -2.18
CLRN3Q8NCR9 TP73-AS1.1-201ENST00000611447 161 ntBASIC1.43□□□□□ -2.18
CLRN3Q8NCR9 MIR219B-201ENST00000637023 88 ntBASIC1.43□□□□□ -2.18
CLRN3Q8NCR9 ZGRF1-202ENST00000309071 3347 ntTSL 1 (best) BASIC1.43□□□□□ -2.18
CLRN3Q8NCR9 RNA5SP289-201ENST00000362332 137 ntBASIC1.42□□□□□ -2.18
CLRN3Q8NCR9 SNORA18-201ENST00000384416 132 ntBASIC1.42□□□□□ -2.18
CLRN3Q8NCR9 RNU4-69P-201ENST00000410677 143 ntBASIC1.42□□□□□ -2.18
CLRN3Q8NCR9 GHRL-208ENST00000439975 326 ntTSL 1 (best) BASIC1.42□□□□□ -2.18
CLRN3Q8NCR9 RNU6-313P-201ENST00000516317 112 ntBASIC1.42□□□□□ -2.18
CLRN3Q8NCR9 MIR3163-201ENST00000581592 73 ntBASIC1.42□□□□□ -2.18
CLRN3Q8NCR9 AL365222.1-201ENST00000614661 98 ntBASIC1.42□□□□□ -2.18
CLRN3Q8NCR9 AC106800.4-201ENST00000614905 153 ntBASIC1.42□□□□□ -2.18
CLRN3Q8NCR9 PPP1R3A-201ENST00000284601 4384 ntAPPRIS P1 TSL 1 (best) BASIC1.42□□□□□ -2.18
CLRN3Q8NCR9 AC008163.1-202ENST00000636004 2889 ntBASIC1.41□□□□□ -2.18
CLRN3Q8NCR9 HIF1A-204ENST00000539097 3956 ntTSL 1 (best) BASIC1.41□□□□□ -2.18
CLRN3Q8NCR9 JMJD1C-212ENST00000639129 7901 ntAPPRIS ALT2 TSL 5 BASIC1.41□□□□□ -2.18
CLRN3Q8NCR9 MTND5P18-201ENST00000445624 1801 ntBASIC1.41□□□□□ -2.18
CLRN3Q8NCR9 SNORA25.8-201ENST00000364831 128 ntBASIC1.41□□□□□ -2.18
CLRN3Q8NCR9 Y_RNA.470-201ENST00000384307 117 ntBASIC1.41□□□□□ -2.18
CLRN3Q8NCR9 RNU6-1081P-201ENST00000384537 107 ntBASIC1.41□□□□□ -2.18
CLRN3Q8NCR9 RNU6-1168P-201ENST00000390831 104 ntBASIC1.41□□□□□ -2.18
CLRN3Q8NCR9 RNU6-1154P-201ENST00000391001 104 ntBASIC1.41□□□□□ -2.18
CLRN3Q8NCR9 SNORD77B-201ENST00000391112 67 ntBASIC1.41□□□□□ -2.18
CLRN3Q8NCR9 RNU6-1165P-201ENST00000410119 107 ntBASIC1.41□□□□□ -2.18
CLRN3Q8NCR9 RNA5SP95-201ENST00000410319 137 ntBASIC1.41□□□□□ -2.18
CLRN3Q8NCR9 RNU2-51P-201ENST00000410708 197 ntBASIC1.41□□□□□ -2.18
CLRN3Q8NCR9 AC036111.3-201ENST00000526389 112 ntBASIC1.41□□□□□ -2.18
CLRN3Q8NCR9 Y_RNA.783-201ENST00000613546 102 ntBASIC1.41□□□□□ -2.18
CLRN3Q8NCR9 AC012676.2-201ENST00000619258 186 ntBASIC1.41□□□□□ -2.18
CLRN3Q8NCR9 AC027335.2-201ENST00000624030 375 ntBASIC1.41□□□□□ -2.18
CLRN3Q8NCR9 Y_RNA.563-201ENST00000384707 108 ntBASIC1.4□□□□□ -2.19
CLRN3Q8NCR9 MIR563-201ENST00000385080 79 ntBASIC1.4□□□□□ -2.19
CLRN3Q8NCR9 MT-TF-201ENST00000387314 71 ntBASIC1.4□□□□□ -2.19
CLRN3Q8NCR9 RNU6-1086P-201ENST00000410930 100 ntBASIC1.4□□□□□ -2.19
CLRN3Q8NCR9 AC019288.1-201ENST00000557918 224 ntBASIC1.4□□□□□ -2.19
CLRN3Q8NCR9 AC022523.2-201ENST00000561045 150 ntBASIC1.4□□□□□ -2.19
CLRN3Q8NCR9 MIR548AE2-201ENST00000583456 67 ntBASIC1.4□□□□□ -2.19
CLRN3Q8NCR9 AL662814.1-201ENST00000617364 121 ntBASIC1.4□□□□□ -2.19
CLRN3Q8NCR9 MIR6740-201ENST00000618268 113 ntBASIC1.4□□□□□ -2.19
CLRN3Q8NCR9 KIAA1551-201ENST00000312561 6230 ntAPPRIS P1 TSL 1 (best) BASIC1.4□□□□□ -2.19
CLRN3Q8NCR9 TDRD15-202ENST00000622654 5805 ntAPPRIS P1 BASIC1.39□□□□□ -2.19
CLRN3Q8NCR9 RNU6-1237P-201ENST00000384777 107 ntBASIC1.39□□□□□ -2.19
CLRN3Q8NCR9 RNU6ATAC3P-201ENST00000387974 126 ntBASIC1.39□□□□□ -2.19
CLRN3Q8NCR9 RNU6-955P-201ENST00000410497 104 ntBASIC1.39□□□□□ -2.19
CLRN3Q8NCR9 Z98742.3-201ENST00000418637 326 ntBASIC1.39□□□□□ -2.19
CLRN3Q8NCR9 MIR18B-201ENST00000454574 71 ntBASIC1.39□□□□□ -2.19
CLRN3Q8NCR9 SNORA59A-201ENST00000459326 152 ntBASIC1.39□□□□□ -2.19
CLRN3Q8NCR9 RNU6ATAC12P-201ENST00000516542 115 ntBASIC1.39□□□□□ -2.19
CLRN3Q8NCR9 IGLVVI-22-1-201ENST00000521183 211 ntBASIC1.39□□□□□ -2.19
CLRN3Q8NCR9 AC023827.1-201ENST00000569247 97 ntBASIC1.39□□□□□ -2.19
CLRN3Q8NCR9 AL359881.1-201ENST00000602916 267 ntBASIC1.39□□□□□ -2.19
CLRN3Q8NCR9 ZNF355P-201ENST00000427301 3216 ntBASIC1.38□□□□□ -2.19
CLRN3Q8NCR9 MIR26B-201ENST00000362251 77 ntBASIC1.38□□□□□ -2.19
CLRN3Q8NCR9 U8.2-201ENST00000363156 134 ntBASIC1.38□□□□□ -2.19
CLRN3Q8NCR9 Y_RNA.261-201ENST00000364631 102 ntBASIC1.38□□□□□ -2.19
CLRN3Q8NCR9 RNU6-342P-201ENST00000384521 104 ntBASIC1.38□□□□□ -2.19
CLRN3Q8NCR9 RNU6ATAC38P-201ENST00000408119 126 ntBASIC1.38□□□□□ -2.19
CLRN3Q8NCR9 RNU6ATAC37P-201ENST00000408328 131 ntBASIC1.38□□□□□ -2.19
CLRN3Q8NCR9 Y_RNA.630-201ENST00000411370 108 ntBASIC1.38□□□□□ -2.19
CLRN3Q8NCR9 AC002429.1-201ENST00000437672 148 ntBASIC1.38□□□□□ -2.19
CLRN3Q8NCR9 RPL39P25-201ENST00000449384 154 ntBASIC1.38□□□□□ -2.19
Retrieved 100 of 98,524 protein–RNA pairs in 165.9 ms