Protein–RNA interactions for Protein: Q6P9F5

TRIM40, Tripartite motif-containing protein 40, humanhuman

Predictions only

Length 258 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM40Q6P9F5 RNU6-716P-201ENST00000365621 103 ntBASIC0.06□□□□□ -2.4
TRIM40Q6P9F5 RNU6-211P-201ENST00000384047 107 ntBASIC0.06□□□□□ -2.4
TRIM40Q6P9F5 Y_RNA.432-201ENST00000384087 111 ntBASIC0.06□□□□□ -2.4
TRIM40Q6P9F5 Y_RNA.476-201ENST00000384347 108 ntBASIC0.06□□□□□ -2.4
TRIM40Q6P9F5 RNU2-59P-201ENST00000410482 191 ntBASIC0.06□□□□□ -2.4
TRIM40Q6P9F5 RNY3P15-201ENST00000516297 97 ntBASIC0.06□□□□□ -2.4
TRIM40Q6P9F5 AL662814.1-201ENST00000617364 121 ntBASIC0.06□□□□□ -2.4
TRIM40Q6P9F5 RNY3P5-201ENST00000384127 102 ntBASIC0.05□□□□□ -2.4
TRIM40Q6P9F5 RNA5SP237-201ENST00000410414 113 ntBASIC0.05□□□□□ -2.4
TRIM40Q6P9F5 Y_RNA.617-201ENST00000410920 90 ntBASIC0.05□□□□□ -2.4
TRIM40Q6P9F5 AL512326.2-201ENST00000426359 151 ntBASIC0.05□□□□□ -2.4
TRIM40Q6P9F5 RNU7-45P-201ENST00000459460 63 ntBASIC0.05□□□□□ -2.4
TRIM40Q6P9F5 RNU6-988P-201ENST00000519081 107 ntBASIC0.05□□□□□ -2.4
TRIM40Q6P9F5 Y_RNA.16-201ENST00000362421 102 ntBASIC0.04□□□□□ -2.4
TRIM40Q6P9F5 Y_RNA.304-201ENST00000365011 112 ntBASIC0.04□□□□□ -2.4
TRIM40Q6P9F5 RNU6-806P-201ENST00000365147 105 ntBASIC0.04□□□□□ -2.4
TRIM40Q6P9F5 Y_RNA.351-201ENST00000365436 96 ntBASIC0.04□□□□□ -2.4
TRIM40Q6P9F5 MIR644A-201ENST00000385262 94 ntBASIC0.04□□□□□ -2.4
TRIM40Q6P9F5 RNA5SP63-201ENST00000391225 112 ntBASIC0.04□□□□□ -2.4
TRIM40Q6P9F5 RNU6ATAC42P-201ENST00000408637 95 ntBASIC0.04□□□□□ -2.4
TRIM40Q6P9F5 AC022028.1-201ENST00000412054 408 ntBASIC0.04□□□□□ -2.4
TRIM40Q6P9F5 SERF1AP1-201ENST00000514575 187 ntBASIC0.04□□□□□ -2.4
TRIM40Q6P9F5 RNU6-1143P-201ENST00000516125 104 ntBASIC0.04□□□□□ -2.4
TRIM40Q6P9F5 SNORA42.1-201ENST00000363515 137 ntBASIC0.03□□□□□ -2.4
TRIM40Q6P9F5 Y_RNA.275-201ENST00000364726 110 ntBASIC0.03□□□□□ -2.4
TRIM40Q6P9F5 SNORA1-201ENST00000384107 130 ntBASIC0.03□□□□□ -2.4
TRIM40Q6P9F5 RNA5SP268-201ENST00000516828 124 ntBASIC0.03□□□□□ -2.4
TRIM40Q6P9F5 KCNQ1OT1_5.1-201ENST00000621902 226 ntBASIC0.03□□□□□ -2.4
TRIM40Q6P9F5 Y_RNA.13-201ENST00000362403 112 ntBASIC0.02□□□□□ -2.41
TRIM40Q6P9F5 Y_RNA.26-201ENST00000362539 101 ntBASIC0.02□□□□□ -2.41
TRIM40Q6P9F5 Y_RNA.115-201ENST00000363272 98 ntBASIC0.02□□□□□ -2.41
TRIM40Q6P9F5 Y_RNA.210-201ENST00000364161 110 ntBASIC0.02□□□□□ -2.41
TRIM40Q6P9F5 Y_RNA.430-201ENST00000384081 110 ntBASIC0.02□□□□□ -2.41
TRIM40Q6P9F5 Y_RNA.455-201ENST00000384230 98 ntBASIC0.02□□□□□ -2.41
TRIM40Q6P9F5 RNU6-474P-201ENST00000384243 107 ntBASIC0.02□□□□□ -2.41
TRIM40Q6P9F5 RNU6-1289P-201ENST00000384431 106 ntBASIC0.02□□□□□ -2.41
TRIM40Q6P9F5 MT-TT-201ENST00000387460 66 ntBASIC0.02□□□□□ -2.41
TRIM40Q6P9F5 Y_RNA.622-201ENST00000411091 108 ntBASIC0.02□□□□□ -2.41
TRIM40Q6P9F5 AL353742.1-201ENST00000453455 224 ntTSL 3 BASIC0.02□□□□□ -2.41
TRIM40Q6P9F5 SNRPGP8-201ENST00000454064 226 ntBASIC0.02□□□□□ -2.41
TRIM40Q6P9F5 RNU7-80P-201ENST00000459562 61 ntBASIC0.02□□□□□ -2.41
TRIM40Q6P9F5 MIR6082-201ENST00000613604 109 ntBASIC0.02□□□□□ -2.41
TRIM40Q6P9F5 MIR376A2-201ENST00000636782 80 ntBASIC0.02□□□□□ -2.41
TRIM40Q6P9F5 Y_RNA.23-201ENST00000362496 106 ntBASIC0.01□□□□□ -2.41
TRIM40Q6P9F5 Y_RNA.64-201ENST00000362845 102 ntBASIC0.01□□□□□ -2.41
TRIM40Q6P9F5 Y_RNA.84-201ENST00000363011 104 ntBASIC0.01□□□□□ -2.41
TRIM40Q6P9F5 RNU6-403P-201ENST00000363163 104 ntBASIC0.01□□□□□ -2.41
TRIM40Q6P9F5 Y_RNA.152-201ENST00000363578 100 ntBASIC0.01□□□□□ -2.41
TRIM40Q6P9F5 Y_RNA.174-201ENST00000363781 105 ntBASIC0.01□□□□□ -2.41
TRIM40Q6P9F5 RNU6-597P-201ENST00000365620 102 ntBASIC0.01□□□□□ -2.41
TRIM40Q6P9F5 U8.15-201ENST00000390947 134 ntBASIC0.01□□□□□ -2.41
TRIM40Q6P9F5 RNU6-1338P-201ENST00000516328 91 ntBASIC0.01□□□□□ -2.41
TRIM40Q6P9F5 RNU6-765P-201ENST00000516916 99 ntBASIC0.01□□□□□ -2.41
TRIM40Q6P9F5 AC113195.1-201ENST00000579952 141 ntBASIC0.01□□□□□ -2.41
TRIM40Q6P9F5 AC011825.2-201ENST00000583138 553 ntTSL 4 BASIC0.01□□□□□ -2.41
TRIM40Q6P9F5 MIR5197-201ENST00000583721 112 ntBASIC0.01□□□□□ -2.41
TRIM40Q6P9F5 AC091932.4-201ENST00000623386 200 ntBASIC0.01□□□□□ -2.41
TRIM40Q6P9F5 DEFB131A-201ENST00000334879 213 ntAPPRIS P1 TSL 1 (best) BASIC0□□□□□ -2.41
TRIM40Q6P9F5 Y_RNA.32-201ENST00000362589 110 ntBASIC0□□□□□ -2.41
TRIM40Q6P9F5 RNU5E-4P-201ENST00000364931 120 ntBASIC0□□□□□ -2.41
TRIM40Q6P9F5 Y_RNA.454-201ENST00000384224 113 ntBASIC0□□□□□ -2.41
TRIM40Q6P9F5 Y_RNA.509-201ENST00000384506 99 ntBASIC0□□□□□ -2.41
TRIM40Q6P9F5 Y_RNA.542-201ENST00000384641 111 ntBASIC0□□□□□ -2.41
TRIM40Q6P9F5 Y_RNA.588-201ENST00000391254 102 ntBASIC0□□□□□ -2.41
TRIM40Q6P9F5 AL606845.1-201ENST00000404881 255 ntBASIC0□□□□□ -2.41
TRIM40Q6P9F5 SEPT7P4-201ENST00000437076 306 ntBASIC0□□□□□ -2.41
TRIM40Q6P9F5 AL035258.1-201ENST00000439450 439 ntTSL 3 BASIC0□□□□□ -2.41
TRIM40Q6P9F5 RNU6-135P-201ENST00000516769 101 ntBASIC0□□□□□ -2.41
TRIM40Q6P9F5 SCARNA24.2-201ENST00000516968 130 ntBASIC0□□□□□ -2.41
TRIM40Q6P9F5 MIR3152-201ENST00000579801 74 ntBASIC0□□□□□ -2.41
TRIM40Q6P9F5 MIR7107-201ENST00000611489 80 ntBASIC0□□□□□ -2.41
TRIM40Q6P9F5 SNORA9.1-201ENST00000362412 131 ntBASIC-0.01□□□□□ -2.41
TRIM40Q6P9F5 Y_RNA.158-201ENST00000363651 101 ntBASIC-0.01□□□□□ -2.41
TRIM40Q6P9F5 RNA5SP457-201ENST00000363657 124 ntBASIC-0.01□□□□□ -2.41
TRIM40Q6P9F5 MIR616-201ENST00000385293 97 ntBASIC-0.01□□□□□ -2.41
TRIM40Q6P9F5 SNORA31.14-201ENST00000516728 116 ntBASIC-0.01□□□□□ -2.41
TRIM40Q6P9F5 AC141846.1-201ENST00000568348 142 ntBASIC-0.01□□□□□ -2.41
TRIM40Q6P9F5 MIR3129-201ENST00000581095 76 ntBASIC-0.01□□□□□ -2.41
TRIM40Q6P9F5 MIR2909-201ENST00000617113 69 ntBASIC-0.01□□□□□ -2.41
TRIM40Q6P9F5 AL109933.3-201ENST00000619095 188 ntBASIC-0.01□□□□□ -2.41
TRIM40Q6P9F5 AL160413.1-201ENST00000622780 310 ntBASIC-0.01□□□□□ -2.41
TRIM40Q6P9F5 MIR6828-201ENST00000636181 60 ntBASIC-0.01□□□□□ -2.41
TRIM40Q6P9F5 KIF20B-201ENST00000260753 6306 ntAPPRIS P3 TSL 1 (best) BASIC-0.02□□□□□ -2.41
TRIM40Q6P9F5 MTND4P29-201ENST00000503122 1372 ntBASIC-0.02□□□□□ -2.41
TRIM40Q6P9F5 Y_RNA.117-201ENST00000363294 101 ntBASIC-0.02□□□□□ -2.41
TRIM40Q6P9F5 RNA5SP214-201ENST00000363378 118 ntBASIC-0.02□□□□□ -2.41
TRIM40Q6P9F5 Y_RNA.128-201ENST00000363391 112 ntBASIC-0.02□□□□□ -2.41
TRIM40Q6P9F5 Y_RNA.199-201ENST00000364014 102 ntBASIC-0.02□□□□□ -2.41
TRIM40Q6P9F5 snoU2_19.4-201ENST00000364329 80 ntBASIC-0.02□□□□□ -2.41
TRIM40Q6P9F5 SNORD114-9-201ENST00000364370 72 ntBASIC-0.02□□□□□ -2.41
TRIM40Q6P9F5 SNORA22B-201ENST00000383876 138 ntBASIC-0.02□□□□□ -2.41
TRIM40Q6P9F5 Y_RNA.527-201ENST00000384573 102 ntBASIC-0.02□□□□□ -2.41
TRIM40Q6P9F5 SNORA20-201ENST00000384662 132 ntBASIC-0.02□□□□□ -2.41
TRIM40Q6P9F5 RNU6-1228P-201ENST00000391014 107 ntBASIC-0.02□□□□□ -2.41
TRIM40Q6P9F5 AC069271.1-201ENST00000445577 156 ntBASIC-0.02□□□□□ -2.41
TRIM40Q6P9F5 MTND5P22-201ENST00000458380 195 ntBASIC-0.02□□□□□ -2.41
TRIM40Q6P9F5 RNU6-453P-201ENST00000516819 85 ntBASIC-0.02□□□□□ -2.41
TRIM40Q6P9F5 SCARNA16.5-201ENST00000517114 183 ntBASIC-0.02□□□□□ -2.41
TRIM40Q6P9F5 MIR4667-201ENST00000578933 66 ntBASIC-0.02□□□□□ -2.41
TRIM40Q6P9F5 AC015818.4-201ENST00000580931 353 ntTSL 5 BASIC-0.02□□□□□ -2.41
Retrieved 100 of 98,524 protein–RNA pairs in 176.4 ms