Protein–RNA interactions for Protein: Q68DE3

USF3, Basic helix-loop-helix domain-containing protein USF3, humanhuman

Predictions only

Length 2,245 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF3Q68DE3 AC092954.2-201ENST00000609103 430 ntBASIC-1.27□□□□□ -2.61
USF3Q68DE3 DLEU2_5.1-201ENST00000615567 84 ntBASIC-1.27□□□□□ -2.61
USF3Q68DE3 AC092794.2-201ENST00000620933 563 ntBASIC-1.27□□□□□ -2.61
USF3Q68DE3 MIR664B-201ENST00000626756 61 ntBASIC-1.27□□□□□ -2.61
USF3Q68DE3 Y_RNA.214-201ENST00000364201 112 ntBASIC-1.28□□□□□ -2.61
USF3Q68DE3 Y_RNA.244-201ENST00000364484 109 ntBASIC-1.28□□□□□ -2.61
USF3Q68DE3 Y_RNA.341-201ENST00000365341 102 ntBASIC-1.28□□□□□ -2.61
USF3Q68DE3 SNORD37.1-201ENST00000390968 65 ntBASIC-1.28□□□□□ -2.61
USF3Q68DE3 Y_RNA.101-201ENST00000363154 102 ntBASIC-1.28□□□□□ -2.61
USF3Q68DE3 SNORD115-27-201ENST00000364430 82 ntBASIC-1.28□□□□□ -2.61
USF3Q68DE3 Y_RNA.328-201ENST00000365208 113 ntBASIC-1.28□□□□□ -2.61
USF3Q68DE3 MIR599-201ENST00000385069 95 ntBASIC-1.28□□□□□ -2.61
USF3Q68DE3 SNORD115-47-201ENST00000391226 86 ntBASIC-1.28□□□□□ -2.61
USF3Q68DE3 MIR548I2-201ENST00000408348 149 ntBASIC-1.28□□□□□ -2.61
USF3Q68DE3 MIR1278-201ENST00000408753 81 ntBASIC-1.28□□□□□ -2.61
USF3Q68DE3 AF228730.4-201ENST00000421457 183 ntBASIC-1.28□□□□□ -2.61
USF3Q68DE3 AL357793.1-201ENST00000448412 401 ntTSL 5 BASIC-1.28□□□□□ -2.61
USF3Q68DE3 AL033528.1-201ENST00000453780 140 ntBASIC-1.28□□□□□ -2.61
USF3Q68DE3 RNU7-45P-201ENST00000459460 63 ntBASIC-1.28□□□□□ -2.61
USF3Q68DE3 RNU6-1270P-201ENST00000517128 108 ntBASIC-1.28□□□□□ -2.61
USF3Q68DE3 MIR2355-201ENST00000517199 87 ntBASIC-1.28□□□□□ -2.61
USF3Q68DE3 AC019193.3-201ENST00000609144 554 ntBASIC-1.28□□□□□ -2.61
USF3Q68DE3 AL008718.3-201ENST00000610217 321 ntBASIC-1.28□□□□□ -2.61
USF3Q68DE3 RNU6-1163P-201ENST00000364516 107 ntBASIC-1.29□□□□□ -2.62
USF3Q68DE3 Y_RNA.284-201ENST00000364806 102 ntBASIC-1.29□□□□□ -2.62
USF3Q68DE3 RNU6-1138P-201ENST00000365359 106 ntBASIC-1.29□□□□□ -2.62
USF3Q68DE3 AL353813.1-201ENST00000440700 253 ntBASIC-1.29□□□□□ -2.62
USF3Q68DE3 MTCO2P4-201ENST00000517968 247 ntBASIC-1.29□□□□□ -2.62
USF3Q68DE3 MIR3672-201ENST00000584290 82 ntBASIC-1.29□□□□□ -2.62
USF3Q68DE3 RNU6-500P-201ENST00000362349 107 ntBASIC-1.3□□□□□ -2.62
USF3Q68DE3 RNU6-1233P-201ENST00000362922 102 ntBASIC-1.3□□□□□ -2.62
USF3Q68DE3 SNORD114-10-201ENST00000363409 72 ntBASIC-1.3□□□□□ -2.62
USF3Q68DE3 RNU6-476P-201ENST00000384726 107 ntBASIC-1.3□□□□□ -2.62
USF3Q68DE3 RNU6-1321P-201ENST00000390905 107 ntBASIC-1.3□□□□□ -2.62
USF3Q68DE3 AL118558.2-201ENST00000556294 238 ntBASIC-1.3□□□□□ -2.62
USF3Q68DE3 UBE2V2P2-201ENST00000587677 504 ntBASIC-1.3□□□□□ -2.62
USF3Q68DE3 Y_RNA.2-201ENST00000362330 96 ntBASIC-1.3□□□□□ -2.62
USF3Q68DE3 Y_RNA.14-201ENST00000362415 103 ntBASIC-1.3□□□□□ -2.62
USF3Q68DE3 Y_RNA.502-201ENST00000384478 113 ntBASIC-1.3□□□□□ -2.62
USF3Q68DE3 RNU4-61P-201ENST00000411243 107 ntBASIC-1.3□□□□□ -2.62
USF3Q68DE3 RNU7-66P-201ENST00000459469 62 ntBASIC-1.3□□□□□ -2.62
USF3Q68DE3 RNA5SP272-201ENST00000516095 111 ntBASIC-1.3□□□□□ -2.62
USF3Q68DE3 AC060780.3-201ENST00000589464 80 ntBASIC-1.3□□□□□ -2.62
USF3Q68DE3 AC124303.1-201ENST00000605703 360 ntBASIC-1.3□□□□□ -2.62
USF3Q68DE3 AP000240.1-201ENST00000609910 452 ntBASIC-1.3□□□□□ -2.62
USF3Q68DE3 PART1_1.1-201ENST00000611761 217 ntBASIC-1.3□□□□□ -2.62
USF3Q68DE3 MIR548AY-201ENST00000617669 107 ntBASIC-1.3□□□□□ -2.62
USF3Q68DE3 Y_RNA.27-201ENST00000362540 103 ntBASIC-1.31□□□□□ -2.62
USF3Q68DE3 RNU6-228P-201ENST00000362700 106 ntBASIC-1.31□□□□□ -2.62
USF3Q68DE3 Y_RNA.364-201ENST00000365532 101 ntBASIC-1.31□□□□□ -2.62
USF3Q68DE3 RNU6-157P-201ENST00000383957 107 ntBASIC-1.31□□□□□ -2.62
USF3Q68DE3 Y_RNA.426-201ENST00000384068 113 ntBASIC-1.31□□□□□ -2.62
USF3Q68DE3 RNU7-63P-201ENST00000459054 62 ntBASIC-1.31□□□□□ -2.62
USF3Q68DE3 Z84484.1-202ENST00000612718 60 ntTSL 5 BASIC-1.31□□□□□ -2.62
USF3Q68DE3 U4.1-201ENST00000620349 87 ntBASIC-1.31□□□□□ -2.62
USF3Q68DE3 AC091912.2-201ENST00000624798 167 ntBASIC-1.31□□□□□ -2.62
USF3Q68DE3 RNU6-1120P-201ENST00000362988 108 ntBASIC-1.31□□□□□ -2.62
USF3Q68DE3 RNU6-254P-201ENST00000363377 107 ntBASIC-1.31□□□□□ -2.62
USF3Q68DE3 RNU4-68P-201ENST00000364314 141 ntBASIC-1.31□□□□□ -2.62
USF3Q68DE3 AL593851.1-201ENST00000426171 157 ntBASIC-1.31□□□□□ -2.62
USF3Q68DE3 SNORD5.1-201ENST00000458800 75 ntBASIC-1.31□□□□□ -2.62
USF3Q68DE3 RNU6-126P-201ENST00000516685 103 ntBASIC-1.31□□□□□ -2.62
USF3Q68DE3 MTATP6P25-201ENST00000574491 261 ntBASIC-1.31□□□□□ -2.62
USF3Q68DE3 MIR4460-201ENST00000577862 86 ntBASIC-1.31□□□□□ -2.62
USF3Q68DE3 MIR548AG2-201ENST00000581228 64 ntBASIC-1.31□□□□□ -2.62
USF3Q68DE3 Y_RNA.106-201ENST00000363189 100 ntBASIC-1.32□□□□□ -2.62
USF3Q68DE3 Y_RNA.117-201ENST00000363294 101 ntBASIC-1.32□□□□□ -2.62
USF3Q68DE3 SNORD18.1-201ENST00000363807 70 ntBASIC-1.32□□□□□ -2.62
USF3Q68DE3 SNORD115-23-201ENST00000364461 82 ntBASIC-1.32□□□□□ -2.62
USF3Q68DE3 RNU6-164P-201ENST00000364604 103 ntBASIC-1.32□□□□□ -2.62
USF3Q68DE3 MIR216B-201ENST00000390186 82 ntBASIC-1.32□□□□□ -2.62
USF3Q68DE3 MIR548H3-201ENST00000408771 118 ntBASIC-1.32□□□□□ -2.62
USF3Q68DE3 AL160004.2-201ENST00000432935 350 ntBASIC-1.32□□□□□ -2.62
USF3Q68DE3 SNORD54-201ENST00000459159 67 ntBASIC-1.32□□□□□ -2.62
USF3Q68DE3 RNU6-287P-201ENST00000516230 98 ntBASIC-1.32□□□□□ -2.62
USF3Q68DE3 SNORD67.1-201ENST00000516618 108 ntBASIC-1.32□□□□□ -2.62
USF3Q68DE3 RNU6-1247P-201ENST00000516622 98 ntBASIC-1.32□□□□□ -2.62
USF3Q68DE3 MIR4273-201ENST00000582824 84 ntBASIC-1.32□□□□□ -2.62
USF3Q68DE3 AC145423.2-201ENST00000610631 239 ntBASIC-1.32□□□□□ -2.62
USF3Q68DE3 AC079248.2-201ENST00000623779 326 ntBASIC-1.32□□□□□ -2.62
USF3Q68DE3 AC092755.1-201ENST00000441746 97 ntTSL 3 BASIC-1.32□□□□□ -2.62
USF3Q68DE3 RNU6-893P-201ENST00000458841 100 ntBASIC-1.32□□□□□ -2.62
USF3Q68DE3 RNU4ATAC4P-201ENST00000516307 126 ntBASIC-1.32□□□□□ -2.62
USF3Q68DE3 RNU6-1057P-201ENST00000517162 102 ntBASIC-1.32□□□□□ -2.62
USF3Q68DE3 snoR1.1-201ENST00000628177 80 ntBASIC-1.32□□□□□ -2.62
USF3Q68DE3 snoU2_19.2-201ENST00000363024 80 ntBASIC-1.33□□□□□ -2.62
USF3Q68DE3 Y_RNA.215-201ENST00000364204 112 ntBASIC-1.33□□□□□ -2.62
USF3Q68DE3 Y_RNA.247-201ENST00000364500 92 ntBASIC-1.33□□□□□ -2.62
USF3Q68DE3 RNU6-596P-201ENST00000365395 98 ntBASIC-1.33□□□□□ -2.62
USF3Q68DE3 RNU6-1103P-201ENST00000384150 107 ntBASIC-1.33□□□□□ -2.62
USF3Q68DE3 AL162734.1-201ENST00000432858 157 ntTSL 5 BASIC-1.33□□□□□ -2.62
USF3Q68DE3 RNU7-80P-201ENST00000459562 61 ntBASIC-1.33□□□□□ -2.62
USF3Q68DE3 SNORD36C-201ENST00000516733 66 ntBASIC-1.33□□□□□ -2.62
USF3Q68DE3 AL669831.3-213ENST00000636676 183 ntBASIC-1.33□□□□□ -2.62
USF3Q68DE3 SNORA2.1-201ENST00000363089 137 ntBASIC-1.34□□□□□ -2.62
USF3Q68DE3 Y_RNA.403-201ENST00000383977 101 ntBASIC-1.34□□□□□ -2.62
USF3Q68DE3 MIR124-2-201ENST00000385081 109 ntBASIC-1.34□□□□□ -2.62
USF3Q68DE3 MIR519A1-201ENST00000385257 85 ntBASIC-1.34□□□□□ -2.62
USF3Q68DE3 MIR652-201ENST00000385278 98 ntBASIC-1.34□□□□□ -2.62
USF3Q68DE3 MIR548H1-201ENST00000408610 102 ntBASIC-1.34□□□□□ -2.62
Retrieved 100 of 98,524 protein–RNA pairs in 102.8 ms