Protein–RNA interactions for Protein: Q01955

COL4A3, Collagen alpha-3(IV) chain, humanhuman

Predictions only

Length 1,670 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A3Q01955 RNU6-109P-201ENST00000516364 107 ntBASIC1.87□□□□□ -2.11
COL4A3Q01955 RNU6-184P-201ENST00000516514 107 ntBASIC1.87□□□□□ -2.11
COL4A3Q01955 RPPH1-2P-201ENST00000516688 293 ntBASIC1.87□□□□□ -2.11
COL4A3Q01955 AC090821.2-201ENST00000523552 176 ntBASIC1.87□□□□□ -2.11
COL4A3Q01955 DEFB131E-201ENST00000532329 154 ntBASIC1.87□□□□□ -2.11
COL4A3Q01955 AC087741.2-201ENST00000619415 172 ntBASIC1.87□□□□□ -2.11
COL4A3Q01955 EYS-205ENST00000393380 5450 ntTSL 1 (best) BASIC1.87□□□□□ -2.11
COL4A3Q01955 RNU4-36P-201ENST00000364294 144 ntBASIC1.86□□□□□ -2.11
COL4A3Q01955 SNORD73B-201ENST00000364394 72 ntBASIC1.86□□□□□ -2.11
COL4A3Q01955 RNU6-816P-201ENST00000390914 107 ntBASIC1.86□□□□□ -2.11
COL4A3Q01955 RNU6-1268P-201ENST00000391214 107 ntBASIC1.86□□□□□ -2.11
COL4A3Q01955 RNU6-1239P-201ENST00000391310 107 ntBASIC1.86□□□□□ -2.11
COL4A3Q01955 MIR1302-4-201ENST00000408701 150 ntBASIC1.86□□□□□ -2.11
COL4A3Q01955 MTATP8P2-201ENST00000435212 202 ntBASIC1.86□□□□□ -2.11
COL4A3Q01955 AC079804.2-201ENST00000490376 200 ntBASIC1.86□□□□□ -2.11
COL4A3Q01955 MIR4658-201ENST00000584344 65 ntBASIC1.86□□□□□ -2.11
COL4A3Q01955 BRDT-206ENST00000402388 3125 ntAPPRIS P3 TSL 1 (best) BASIC1.86□□□□□ -2.11
COL4A3Q01955 DYNC2H1-203ENST00000398093 12945 ntAPPRIS P3 TSL 5 BASIC1.86□□□□□ -2.11
COL4A3Q01955 RNU6-112P-201ENST00000363599 104 ntBASIC1.86□□□□□ -2.11
COL4A3Q01955 RNU6-1131P-201ENST00000364955 107 ntBASIC1.86□□□□□ -2.11
COL4A3Q01955 TRAJ50-201ENST00000390487 60 ntAPPRIS P1 BASIC1.86□□□□□ -2.11
COL4A3Q01955 SNORA19.1-201ENST00000410656 129 ntBASIC1.86□□□□□ -2.11
COL4A3Q01955 RNU6ATAC12P-201ENST00000516542 115 ntBASIC1.86□□□□□ -2.11
COL4A3Q01955 AC036222.2-201ENST00000579033 333 ntTSL 3 BASIC1.86□□□□□ -2.11
COL4A3Q01955 U1.36-201ENST00000620684 176 ntBASIC1.86□□□□□ -2.11
COL4A3Q01955 CSNK1G3-202ENST00000360683 4047 ntAPPRIS ALT2 TSL 1 (best) BASIC1.86□□□□□ -2.11
COL4A3Q01955 RNU6-1099P-201ENST00000363533 107 ntBASIC1.85□□□□□ -2.11
COL4A3Q01955 SNORA48.1-201ENST00000390879 135 ntBASIC1.85□□□□□ -2.11
COL4A3Q01955 AC019129.1-201ENST00000403786 261 ntBASIC1.85□□□□□ -2.11
COL4A3Q01955 RNA5SP501-201ENST00000410990 112 ntBASIC1.85□□□□□ -2.11
COL4A3Q01955 RNU7-113P-201ENST00000459273 62 ntBASIC1.85□□□□□ -2.11
COL4A3Q01955 IGHVII-40-1-201ENST00000517316 58 ntBASIC1.85□□□□□ -2.11
COL4A3Q01955 AC141557.1-201ENST00000540982 400 ntBASIC1.85□□□□□ -2.11
COL4A3Q01955 MIR4709-201ENST00000577272 72 ntBASIC1.85□□□□□ -2.11
COL4A3Q01955 AC021506.2-201ENST00000612354 169 ntBASIC1.85□□□□□ -2.11
COL4A3Q01955 SAMD9L-201ENST00000318238 7134 ntAPPRIS P1 TSL 1 (best) BASIC1.84□□□□□ -2.11
COL4A3Q01955 RNU6-363P-201ENST00000362895 105 ntBASIC1.84□□□□□ -2.11
COL4A3Q01955 SNORD114-22-201ENST00000365423 72 ntBASIC1.84□□□□□ -2.11
COL4A3Q01955 SNORA70.7-201ENST00000384159 133 ntBASIC1.84□□□□□ -2.11
COL4A3Q01955 RNU6-49P-201ENST00000384256 107 ntBASIC1.84□□□□□ -2.11
COL4A3Q01955 RNA5SP261-201ENST00000410536 106 ntBASIC1.84□□□□□ -2.11
COL4A3Q01955 ATP6V0E1P1-201ENST00000412537 226 ntBASIC1.84□□□□□ -2.11
COL4A3Q01955 RPS3AP1-201ENST00000413190 320 ntBASIC1.84□□□□□ -2.11
COL4A3Q01955 snoU13.27-201ENST00000459278 104 ntBASIC1.84□□□□□ -2.11
COL4A3Q01955 RNU7-45P-201ENST00000459460 63 ntBASIC1.84□□□□□ -2.11
COL4A3Q01955 RPS23P4-201ENST00000487908 423 ntBASIC1.84□□□□□ -2.11
COL4A3Q01955 RNA5SP481-201ENST00000516814 122 ntBASIC1.84□□□□□ -2.11
COL4A3Q01955 Y_RNA.773-201ENST00000607168 90 ntBASIC1.84□□□□□ -2.11
COL4A3Q01955 G3BP1-214ENST00000627077 114 ntTSL 5 BASIC1.84□□□□□ -2.11
COL4A3Q01955 PLD1-217ENST00000627725 174 ntTSL 5 BASIC1.84□□□□□ -2.11
COL4A3Q01955 Y_RNA.93-201ENST00000363066 109 ntBASIC1.83□□□□□ -2.12
COL4A3Q01955 RNU6-360P-201ENST00000390944 104 ntBASIC1.83□□□□□ -2.12
COL4A3Q01955 RNU4ATAC16P-201ENST00000408512 126 ntBASIC1.83□□□□□ -2.12
COL4A3Q01955 RNU4-69P-201ENST00000410677 143 ntBASIC1.83□□□□□ -2.12
COL4A3Q01955 RPS29P29-201ENST00000456396 171 ntBASIC1.83□□□□□ -2.12
COL4A3Q01955 RNU6-904P-201ENST00000516206 101 ntBASIC1.83□□□□□ -2.12
COL4A3Q01955 RNA5SP33-201ENST00000516687 98 ntBASIC1.83□□□□□ -2.12
COL4A3Q01955 MIR3618-201ENST00000580330 88 ntBASIC1.83□□□□□ -2.12
COL4A3Q01955 MIR4285-201ENST00000581001 85 ntBASIC1.83□□□□□ -2.12
COL4A3Q01955 MIR4448-201ENST00000584360 86 ntBASIC1.83□□□□□ -2.12
COL4A3Q01955 AL645939.4-201ENST00000604495 135 ntBASIC1.83□□□□□ -2.12
COL4A3Q01955 AL513423.1-201ENST00000621695 132 ntBASIC1.83□□□□□ -2.12
COL4A3Q01955 FO624990.1-201ENST00000636373 85 ntBASIC1.83□□□□□ -2.12
COL4A3Q01955 NEBL-202ENST00000377122 9216 ntTSL 1 (best) BASIC1.83□□□□□ -2.12
COL4A3Q01955 ATP11C-202ENST00000361648 6010 ntAPPRIS ALT2 TSL 1 (best) BASIC1.83□□□□□ -2.12
COL4A3Q01955 AL442644.1-201ENST00000454390 3105 ntBASIC1.83□□□□□ -2.12
COL4A3Q01955 BRCA1-202ENST00000354071 4497 ntTSL 1 (best) BASIC1.83□□□□□ -2.12
COL4A3Q01955 SNORD115-2-201ENST00000362842 82 ntBASIC1.83□□□□□ -2.12
COL4A3Q01955 Y_RNA.155-201ENST00000363632 101 ntBASIC1.83□□□□□ -2.12
COL4A3Q01955 Y_RNA.171-201ENST00000363760 102 ntBASIC1.83□□□□□ -2.12
COL4A3Q01955 SNORD115-20-201ENST00000365099 82 ntBASIC1.83□□□□□ -2.12
COL4A3Q01955 Y_RNA.327-201ENST00000365201 102 ntBASIC1.83□□□□□ -2.12
COL4A3Q01955 RNU6-296P-201ENST00000384608 107 ntBASIC1.83□□□□□ -2.12
COL4A3Q01955 Y_RNA.601-201ENST00000410500 113 ntBASIC1.83□□□□□ -2.12
COL4A3Q01955 PGBD4P5-201ENST00000445958 426 ntBASIC1.83□□□□□ -2.12
COL4A3Q01955 RNU7-34P-201ENST00000459394 64 ntBASIC1.83□□□□□ -2.12
COL4A3Q01955 AC113410.1-201ENST00000505029 247 ntBASIC1.83□□□□□ -2.12
COL4A3Q01955 RNU2-13P-201ENST00000515909 113 ntBASIC1.83□□□□□ -2.12
COL4A3Q01955 SCARNA23-201ENST00000516060 130 ntBASIC1.83□□□□□ -2.12
COL4A3Q01955 RNU7-53P-201ENST00000516705 60 ntBASIC1.83□□□□□ -2.12
COL4A3Q01955 RNU6-1258P-201ENST00000516911 111 ntBASIC1.83□□□□□ -2.12
COL4A3Q01955 RNA5SP437-201ENST00000517249 129 ntBASIC1.83□□□□□ -2.12
COL4A3Q01955 FAM106DP-201ENST00000586416 501 ntBASIC1.83□□□□□ -2.12
COL4A3Q01955 FAM71BP1-201ENST00000604431 523 ntBASIC1.83□□□□□ -2.12
COL4A3Q01955 SNORD3E-202ENST00000627253 216 ntBASIC1.83□□□□□ -2.12
COL4A3Q01955 AC131280.1-202ENST00000624067 4211 ntBASIC1.83□□□□□ -2.12
COL4A3Q01955 Y_RNA.220-201ENST00000364244 109 ntBASIC1.82□□□□□ -2.12
COL4A3Q01955 RNU6-409P-201ENST00000384114 104 ntBASIC1.82□□□□□ -2.12
COL4A3Q01955 RNU6-733P-201ENST00000410759 104 ntBASIC1.82□□□□□ -2.12
COL4A3Q01955 SNORD123-201ENST00000459473 70 ntBASIC1.82□□□□□ -2.12
COL4A3Q01955 MIR4791-201ENST00000607666 84 ntBASIC1.82□□□□□ -2.12
COL4A3Q01955 AC243994.1-201ENST00000618627 109 ntBASIC1.82□□□□□ -2.12
COL4A3Q01955 MAPK10-266ENST00000641066 6555 ntBASIC1.82□□□□□ -2.12
COL4A3Q01955 RNY3P2-201ENST00000362918 102 ntBASIC1.81□□□□□ -2.12
COL4A3Q01955 SNORA24-201ENST00000384096 131 ntBASIC1.81□□□□□ -2.12
COL4A3Q01955 Y_RNA.537-201ENST00000384626 109 ntBASIC1.81□□□□□ -2.12
COL4A3Q01955 MIR660-201ENST00000385235 97 ntBASIC1.81□□□□□ -2.12
COL4A3Q01955 RNU7-73P-201ENST00000458743 63 ntBASIC1.81□□□□□ -2.12
COL4A3Q01955 AC090255.1-201ENST00000495779 349 ntBASIC1.81□□□□□ -2.12
COL4A3Q01955 MIR1255B1-201ENST00000636325 63 ntBASIC1.81□□□□□ -2.12
Retrieved 100 of 98,524 protein–RNA pairs in 193.1 ms