Protein–RNA interactions for Protein: Q00056

HOXA4, Homeobox protein Hox-A4, humanhuman

Predicted RBP Predictions only

Length 320 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA4Q00056 DNAJC19P9-201ENST00000555084 351 ntBASIC1.52□□□□□ -2.17
HOXA4Q00056 MIR3152-201ENST00000579801 74 ntBASIC1.52□□□□□ -2.17
HOXA4Q00056 HOTAIRM1_4.1-201ENST00000617934 102 ntBASIC1.52□□□□□ -2.17
HOXA4Q00056 MIR4251-201ENST00000635819 61 ntBASIC1.52□□□□□ -2.17
HOXA4Q00056 ZNF260-205ENST00000593142 4047 ntAPPRIS P1 TSL 1 (best) BASIC1.52□□□□□ -2.17
HOXA4Q00056 Y_RNA.85-201ENST00000363014 111 ntBASIC1.51□□□□□ -2.17
HOXA4Q00056 Y_RNA.362-201ENST00000365518 110 ntBASIC1.51□□□□□ -2.17
HOXA4Q00056 AL022718.1-201ENST00000412004 84 ntBASIC1.51□□□□□ -2.17
HOXA4Q00056 AC090844.1-201ENST00000422019 156 ntBASIC1.51□□□□□ -2.17
HOXA4Q00056 AC108752.1-201ENST00000484679 576 ntTSL 5 BASIC1.51□□□□□ -2.17
HOXA4Q00056 RNU6-947P-201ENST00000516264 106 ntBASIC1.51□□□□□ -2.17
HOXA4Q00056 RNU6-295P-201ENST00000516901 104 ntBASIC1.51□□□□□ -2.17
HOXA4Q00056 RNU6-250P-201ENST00000516958 103 ntBASIC1.51□□□□□ -2.17
HOXA4Q00056 AC019176.1-201ENST00000518519 225 ntBASIC1.51□□□□□ -2.17
HOXA4Q00056 MIR4419B-201ENST00000577260 68 ntBASIC1.51□□□□□ -2.17
HOXA4Q00056 MIR4448-201ENST00000584360 86 ntBASIC1.51□□□□□ -2.17
HOXA4Q00056 AL096861.1-201ENST00000610899 123 ntBASIC1.51□□□□□ -2.17
HOXA4Q00056 uc_338.20-201ENST00000621563 178 ntBASIC1.51□□□□□ -2.17
HOXA4Q00056 AC084768.2-201ENST00000622736 221 ntBASIC1.51□□□□□ -2.17
HOXA4Q00056 FSIP2-202ENST00000424728 20788 ntAPPRIS P2 TSL 5 BASIC1.51□□□□□ -2.17
HOXA4Q00056 TFEC-204ENST00000457268 6309 ntTSL 3 BASIC1.5□□□□□ -2.17
HOXA4Q00056 SNORA22.1-201ENST00000362701 134 ntBASIC1.5□□□□□ -2.17
HOXA4Q00056 RNU6-1255P-201ENST00000363434 112 ntBASIC1.5□□□□□ -2.17
HOXA4Q00056 RNU6-640P-201ENST00000363693 105 ntBASIC1.5□□□□□ -2.17
HOXA4Q00056 RNU6-905P-201ENST00000384434 107 ntBASIC1.5□□□□□ -2.17
HOXA4Q00056 Y_RNA.495-201ENST00000384435 112 ntBASIC1.5□□□□□ -2.17
HOXA4Q00056 Y_RNA.531-201ENST00000384589 121 ntBASIC1.5□□□□□ -2.17
HOXA4Q00056 AC019129.1-201ENST00000403786 261 ntBASIC1.5□□□□□ -2.17
HOXA4Q00056 RNA5SP489-201ENST00000410986 109 ntBASIC1.5□□□□□ -2.17
HOXA4Q00056 HMGN2P38-201ENST00000423806 265 ntBASIC1.5□□□□□ -2.17
HOXA4Q00056 AC009474.2-201ENST00000451383 136 ntBASIC1.5□□□□□ -2.17
HOXA4Q00056 AC079760.1-201ENST00000456952 202 ntTSL 3 BASIC1.5□□□□□ -2.17
HOXA4Q00056 snoU13.25-201ENST00000458945 104 ntBASIC1.5□□□□□ -2.17
HOXA4Q00056 AC007991.3-201ENST00000517623 502 ntTSL 4 BASIC1.5□□□□□ -2.17
HOXA4Q00056 MIR4679-2-201ENST00000578358 77 ntBASIC1.5□□□□□ -2.17
HOXA4Q00056 AC090616.3-202ENST00000583346 205 ntTSL 2 BASIC1.5□□□□□ -2.17
HOXA4Q00056 AL096840.1-201ENST00000603287 93 ntBASIC1.5□□□□□ -2.17
HOXA4Q00056 GHRLOS.1-201ENST00000610995 70 ntBASIC1.5□□□□□ -2.17
HOXA4Q00056 MIR6841-201ENST00000637129 72 ntBASIC1.5□□□□□ -2.17
HOXA4Q00056 ZBBX-205ENST00000455345 3185 ntAPPRIS ALT2 TSL 1 (best) BASIC1.49□□□□□ -2.17
HOXA4Q00056 FAM135A-203ENST00000370479 5930 ntTSL 1 (best) BASIC1.49□□□□□ -2.17
HOXA4Q00056 Y_RNA.348-201ENST00000365403 103 ntBASIC1.49□□□□□ -2.17
HOXA4Q00056 MIR504-201ENST00000385065 83 ntBASIC1.49□□□□□ -2.17
HOXA4Q00056 AL591806.2-201ENST00000433122 173 ntBASIC1.49□□□□□ -2.17
HOXA4Q00056 AC079140.2-201ENST00000506193 142 ntBASIC1.49□□□□□ -2.17
HOXA4Q00056 RNU6-109P-201ENST00000516364 107 ntBASIC1.49□□□□□ -2.17
HOXA4Q00056 SNORD111.1-201ENST00000516421 86 ntBASIC1.49□□□□□ -2.17
HOXA4Q00056 RNU6-184P-201ENST00000516514 107 ntBASIC1.49□□□□□ -2.17
HOXA4Q00056 AL359851.1-201ENST00000569460 4997 ntBASIC1.49□□□□□ -2.17
HOXA4Q00056 WWP1P1-201ENST00000466609 2769 ntBASIC1.49□□□□□ -2.17
HOXA4Q00056 Y_RNA.43-201ENST00000362670 111 ntBASIC1.48□□□□□ -2.17
HOXA4Q00056 Y_RNA.328-201ENST00000365208 113 ntBASIC1.48□□□□□ -2.17
HOXA4Q00056 Y_RNA.430-201ENST00000384081 110 ntBASIC1.48□□□□□ -2.17
HOXA4Q00056 Y_RNA.470-201ENST00000384307 117 ntBASIC1.48□□□□□ -2.17
HOXA4Q00056 MIR759-201ENST00000390224 91 ntBASIC1.48□□□□□ -2.17
HOXA4Q00056 RNA5SP261-201ENST00000410536 106 ntBASIC1.48□□□□□ -2.17
HOXA4Q00056 RNU2-40P-201ENST00000410833 196 ntBASIC1.48□□□□□ -2.17
HOXA4Q00056 RNU7-113P-201ENST00000459273 62 ntBASIC1.48□□□□□ -2.17
HOXA4Q00056 RPL39P34-201ENST00000477141 156 ntBASIC1.48□□□□□ -2.17
HOXA4Q00056 RNU6-537P-201ENST00000517277 103 ntBASIC1.48□□□□□ -2.17
HOXA4Q00056 MIR5582-201ENST00000579697 68 ntBASIC1.48□□□□□ -2.17
HOXA4Q00056 TRAJ36-201ENST00000614481 58 ntAPPRIS P1 BASIC1.48□□□□□ -2.17
HOXA4Q00056 MIR6715A-201ENST00000615929 79 ntBASIC1.48□□□□□ -2.17
HOXA4Q00056 SPTSSB-205ENST00000620149 231 ntAPPRIS P1 BASIC1.48□□□□□ -2.17
HOXA4Q00056 Z97988.1-201ENST00000637697 135 ntBASIC1.48□□□□□ -2.17
HOXA4Q00056 HFM1-201ENST00000370425 4931 ntAPPRIS P1 TSL 1 (best) BASIC1.48□□□□□ -2.17
HOXA4Q00056 SNORA25.3-201ENST00000363205 127 ntBASIC1.47□□□□□ -2.17
HOXA4Q00056 Y_RNA.163-201ENST00000363702 113 ntBASIC1.47□□□□□ -2.17
HOXA4Q00056 Y_RNA.213-201ENST00000364178 111 ntBASIC1.47□□□□□ -2.17
HOXA4Q00056 SNORA1.1-201ENST00000364671 133 ntBASIC1.47□□□□□ -2.17
HOXA4Q00056 U8.6-201ENST00000364939 135 ntBASIC1.47□□□□□ -2.17
HOXA4Q00056 SNORD48-201ENST00000364953 64 ntBASIC1.47□□□□□ -2.17
HOXA4Q00056 RPS3AP1-201ENST00000413190 320 ntBASIC1.47□□□□□ -2.17
HOXA4Q00056 RNA5SP445-201ENST00000515889 115 ntBASIC1.47□□□□□ -2.17
HOXA4Q00056 RNU7-6P-201ENST00000516845 62 ntBASIC1.47□□□□□ -2.17
HOXA4Q00056 AP001109.1-201ENST00000587114 279 ntTSL 3 BASIC1.47□□□□□ -2.17
HOXA4Q00056 AL357312.1-201ENST00000603879 298 ntBASIC1.47□□□□□ -2.17
HOXA4Q00056 PRELID3BP2-201ENST00000605362 201 ntBASIC1.47□□□□□ -2.17
HOXA4Q00056 Y_RNA.773-201ENST00000607168 90 ntBASIC1.47□□□□□ -2.17
HOXA4Q00056 FAS-AS1.2-201ENST00000620386 170 ntBASIC1.47□□□□□ -2.17
HOXA4Q00056 MIR1255B1-201ENST00000636325 63 ntBASIC1.47□□□□□ -2.17
HOXA4Q00056 RNY4P6-201ENST00000363667 96 ntBASIC1.46□□□□□ -2.18
HOXA4Q00056 MIR488-201ENST00000365739 83 ntBASIC1.46□□□□□ -2.18
HOXA4Q00056 RNU6-1014P-201ENST00000383940 103 ntBASIC1.46□□□□□ -2.18
HOXA4Q00056 MIR590-201ENST00000385008 97 ntBASIC1.46□□□□□ -2.18
HOXA4Q00056 RNU6-602P-201ENST00000411155 105 ntBASIC1.46□□□□□ -2.18
HOXA4Q00056 AL353813.1-201ENST00000440700 253 ntBASIC1.46□□□□□ -2.18
HOXA4Q00056 AC027119.1-201ENST00000440877 241 ntBASIC1.46□□□□□ -2.18
HOXA4Q00056 AL031737.1-201ENST00000450125 223 ntBASIC1.46□□□□□ -2.18
HOXA4Q00056 RNU6-893P-201ENST00000458841 100 ntBASIC1.46□□□□□ -2.18
HOXA4Q00056 RNA5SP33-201ENST00000516687 98 ntBASIC1.46□□□□□ -2.18
HOXA4Q00056 MIR3198-2-201ENST00000577868 80 ntBASIC1.46□□□□□ -2.18
HOXA4Q00056 MIR3937-201ENST00000580135 106 ntBASIC1.46□□□□□ -2.18
HOXA4Q00056 MIR7843-201ENST00000622274 79 ntBASIC1.46□□□□□ -2.18
HOXA4Q00056 SNORD115-2-201ENST00000362842 82 ntBASIC1.45□□□□□ -2.18
HOXA4Q00056 RNA5SP99-201ENST00000364020 114 ntBASIC1.45□□□□□ -2.18
HOXA4Q00056 SNORD115-20-201ENST00000365099 82 ntBASIC1.45□□□□□ -2.18
HOXA4Q00056 RNU6-49P-201ENST00000384256 107 ntBASIC1.45□□□□□ -2.18
HOXA4Q00056 MIR1302-7-201ENST00000408841 72 ntBASIC1.45□□□□□ -2.18
HOXA4Q00056 RPS23P4-201ENST00000487908 423 ntBASIC1.45□□□□□ -2.18
Retrieved 100 of 98,524 protein–RNA pairs in 82.1 ms