Protein–RNA interactions for Protein: P50479

PDLIM4, PDZ and LIM domain protein 4, humanhuman

Predictions only

Length 330 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM4P50479 MIR8055-201ENST00000610739 97 ntBASIC1.35□□□□□ -2.19
PDLIM4P50479 AC025166.1-201ENST00000612411 163 ntBASIC1.35□□□□□ -2.19
PDLIM4P50479 AC021613.1-201ENST00000623880 111 ntBASIC1.35□□□□□ -2.19
PDLIM4P50479 SKIL-204ENST00000458537 7182 ntAPPRIS P1 TSL 1 (best) BASIC1.34□□□□□ -2.19
PDLIM4P50479 RNY1P10-201ENST00000363268 113 ntBASIC1.34□□□□□ -2.19
PDLIM4P50479 RNU1-42P-201ENST00000364033 160 ntBASIC1.34□□□□□ -2.19
PDLIM4P50479 RNU6-1056P-201ENST00000383996 107 ntBASIC1.34□□□□□ -2.19
PDLIM4P50479 RNU6-1144P-201ENST00000384247 104 ntBASIC1.34□□□□□ -2.19
PDLIM4P50479 MIR520C-201ENST00000385005 87 ntBASIC1.34□□□□□ -2.19
PDLIM4P50479 MIR517C-201ENST00000385103 95 ntBASIC1.34□□□□□ -2.19
PDLIM4P50479 RNU6-1064P-201ENST00000410626 104 ntBASIC1.34□□□□□ -2.19
PDLIM4P50479 RNU6-321P-201ENST00000410912 106 ntBASIC1.34□□□□□ -2.19
PDLIM4P50479 AC009474.2-201ENST00000451383 136 ntBASIC1.34□□□□□ -2.19
PDLIM4P50479 TRMT112P2-201ENST00000512910 132 ntBASIC1.34□□□□□ -2.19
PDLIM4P50479 RNU6-1061P-201ENST00000516530 99 ntBASIC1.34□□□□□ -2.19
PDLIM4P50479 AC004148.1-201ENST00000571506 398 ntTSL 5 BASIC1.34□□□□□ -2.19
PDLIM4P50479 MIR3152-201ENST00000579801 74 ntBASIC1.34□□□□□ -2.19
PDLIM4P50479 MIR4305-201ENST00000583252 102 ntBASIC1.34□□□□□ -2.19
PDLIM4P50479 FAS-AS1.2-201ENST00000620386 170 ntBASIC1.34□□□□□ -2.19
PDLIM4P50479 MIR8063-201ENST00000621930 81 ntBASIC1.34□□□□□ -2.19
PDLIM4P50479 AC008133.2-201ENST00000624540 351 ntBASIC1.34□□□□□ -2.19
PDLIM4P50479 MIR6841-201ENST00000637129 72 ntBASIC1.34□□□□□ -2.19
PDLIM4P50479 AL596211.1-201ENST00000569873 2277 ntBASIC1.34□□□□□ -2.2
PDLIM4P50479 AL161722.3-201ENST00000605789 2983 ntBASIC1.34□□□□□ -2.2
PDLIM4P50479 MIR302B-201ENST00000362188 73 ntBASIC1.33□□□□□ -2.2
PDLIM4P50479 Y_RNA.198-201ENST00000364013 98 ntBASIC1.33□□□□□ -2.2
PDLIM4P50479 RNU6-60P-201ENST00000364792 103 ntBASIC1.33□□□□□ -2.2
PDLIM4P50479 Y_RNA.298-201ENST00000364960 107 ntBASIC1.33□□□□□ -2.2
PDLIM4P50479 RNU6-215P-201ENST00000365169 102 ntBASIC1.33□□□□□ -2.2
PDLIM4P50479 SNORA51.10-201ENST00000384418 136 ntBASIC1.33□□□□□ -2.2
PDLIM4P50479 RNU6-476P-201ENST00000384726 107 ntBASIC1.33□□□□□ -2.2
PDLIM4P50479 RNA5SP144-201ENST00000410846 116 ntBASIC1.33□□□□□ -2.2
PDLIM4P50479 AC073127.1-201ENST00000447336 333 ntTSL 3 BASIC1.33□□□□□ -2.2
PDLIM4P50479 HSPE1P24-201ENST00000450782 238 ntBASIC1.33□□□□□ -2.2
PDLIM4P50479 RNU7-67P-201ENST00000459003 62 ntBASIC1.33□□□□□ -2.2
PDLIM4P50479 RNU7-95P-201ENST00000459222 64 ntBASIC1.33□□□□□ -2.2
PDLIM4P50479 RNU5E-3P-201ENST00000515913 68 ntBASIC1.33□□□□□ -2.2
PDLIM4P50479 RNU6-958P-201ENST00000516995 106 ntBASIC1.33□□□□□ -2.2
PDLIM4P50479 RNU1-92P-201ENST00000517017 135 ntBASIC1.33□□□□□ -2.2
PDLIM4P50479 AL020996.3-201ENST00000606617 222 ntBASIC1.33□□□□□ -2.2
PDLIM4P50479 GHRLOS.1-201ENST00000610995 70 ntBASIC1.33□□□□□ -2.2
PDLIM4P50479 GNAS-AS1_4.1-201ENST00000616546 112 ntBASIC1.33□□□□□ -2.2
PDLIM4P50479 MTND5P18-201ENST00000445624 1801 ntBASIC1.33□□□□□ -2.2
PDLIM4P50479 UBE3A-225ENST00000636667 5726 ntTSL 5 BASIC1.33□□□□□ -2.2
PDLIM4P50479 UHRF1BP1L-203ENST00000545232 4088 ntTSL 1 (best) BASIC1.32□□□□□ -2.2
PDLIM4P50479 SNORD115-2-201ENST00000362842 82 ntBASIC1.32□□□□□ -2.2
PDLIM4P50479 SNORD1A-201ENST00000364968 72 ntBASIC1.32□□□□□ -2.2
PDLIM4P50479 SNORD115-20-201ENST00000365099 82 ntBASIC1.32□□□□□ -2.2
PDLIM4P50479 POLR2J4-204ENST00000418424 324 ntBASIC1.32□□□□□ -2.2
PDLIM4P50479 AC005908.1-201ENST00000468701 347 ntBASIC1.32□□□□□ -2.2
PDLIM4P50479 AC079140.2-201ENST00000506193 142 ntBASIC1.32□□□□□ -2.2
PDLIM4P50479 AC021443.1-201ENST00000604478 211 ntBASIC1.32□□□□□ -2.2
PDLIM4P50479 AL670379.3-201ENST00000605040 251 ntBASIC1.32□□□□□ -2.2
PDLIM4P50479 HOTAIRM1_4.1-201ENST00000617934 102 ntBASIC1.32□□□□□ -2.2
PDLIM4P50479 MIR6717-201ENST00000622747 73 ntBASIC1.32□□□□□ -2.2
PDLIM4P50479 Z97988.1-201ENST00000637697 135 ntBASIC1.32□□□□□ -2.2
PDLIM4P50479 JMJD1C-212ENST00000639129 7901 ntAPPRIS ALT2 TSL 5 BASIC1.31□□□□□ -2.2
PDLIM4P50479 Y_RNA.528-201ENST00000384575 108 ntBASIC1.31□□□□□ -2.2
PDLIM4P50479 MIR570-201ENST00000384917 97 ntBASIC1.31□□□□□ -2.2
PDLIM4P50479 RNU6-913P-201ENST00000390913 95 ntBASIC1.31□□□□□ -2.2
PDLIM4P50479 RNU1-78P-201ENST00000391248 165 ntBASIC1.31□□□□□ -2.2
PDLIM4P50479 ZNF468-202ENST00000396409 384 ntTSL 5 BASIC1.31□□□□□ -2.2
PDLIM4P50479 AC027119.1-201ENST00000440877 241 ntBASIC1.31□□□□□ -2.2
PDLIM4P50479 AC245517.4-201ENST00000448601 281 ntBASIC1.31□□□□□ -2.2
PDLIM4P50479 AC078980.1-201ENST00000485384 262 ntTSL 2 BASIC1.31□□□□□ -2.2
PDLIM4P50479 SNORA31.24-201ENST00000517232 57 ntBASIC1.31□□□□□ -2.2
PDLIM4P50479 MIR4679-2-201ENST00000578358 77 ntBASIC1.31□□□□□ -2.2
PDLIM4P50479 AL645939.4-201ENST00000604495 135 ntBASIC1.31□□□□□ -2.2
PDLIM4P50479 PPP1R3A-201ENST00000284601 4384 ntAPPRIS P1 TSL 1 (best) BASIC1.31□□□□□ -2.2
PDLIM4P50479 AP000648.3-201ENST00000623539 4507 ntBASIC1.31□□□□□ -2.2
PDLIM4P50479 HFM1-201ENST00000370425 4931 ntAPPRIS P1 TSL 1 (best) BASIC1.31□□□□□ -2.2
PDLIM4P50479 ABCA5-201ENST00000392676 8220 ntAPPRIS P1 TSL 1 (best) BASIC1.31□□□□□ -2.2
PDLIM4P50479 ZNF209P-201ENST00000593450 2304 ntBASIC1.31□□□□□ -2.2
PDLIM4P50479 RNA5SP48-201ENST00000363969 126 ntBASIC1.3□□□□□ -2.2
PDLIM4P50479 RNU6-1065P-201ENST00000384513 106 ntBASIC1.3□□□□□ -2.2
PDLIM4P50479 AL031386.1-201ENST00000411940 142 ntTSL 5 BASIC1.3□□□□□ -2.2
PDLIM4P50479 SNX2P2-201ENST00000424553 323 ntBASIC1.3□□□□□ -2.2
PDLIM4P50479 RNU7-164P-201ENST00000459221 62 ntBASIC1.3□□□□□ -2.2
PDLIM4P50479 RNU2-35P-201ENST00000516446 142 ntBASIC1.3□□□□□ -2.2
PDLIM4P50479 RNY4P20-201ENST00000516678 93 ntBASIC1.3□□□□□ -2.2
PDLIM4P50479 IGHVII-40-1-201ENST00000517316 58 ntBASIC1.3□□□□□ -2.2
PDLIM4P50479 ANGPTL3-201ENST00000371129 2805 ntAPPRIS P1 TSL 1 (best) BASIC1.3□□□□□ -2.2
PDLIM4P50479 MIR342-201ENST00000362212 99 ntBASIC1.29□□□□□ -2.2
PDLIM4P50479 MIR1263-201ENST00000408324 86 ntBASIC1.29□□□□□ -2.2
PDLIM4P50479 AL022718.1-201ENST00000412004 84 ntBASIC1.29□□□□□ -2.2
PDLIM4P50479 RPS29P23-201ENST00000458635 123 ntBASIC1.29□□□□□ -2.2
PDLIM4P50479 RNU7-123P-201ENST00000515911 60 ntBASIC1.29□□□□□ -2.2
PDLIM4P50479 SNORD33.1-201ENST00000516213 88 ntBASIC1.29□□□□□ -2.2
PDLIM4P50479 RNU6-589P-201ENST00000516485 107 ntBASIC1.29□□□□□ -2.2
PDLIM4P50479 RNU6-919P-201ENST00000516731 104 ntBASIC1.29□□□□□ -2.2
PDLIM4P50479 RNU6-922P-201ENST00000516753 99 ntBASIC1.29□□□□□ -2.2
PDLIM4P50479 AP003716.2-201ENST00000528260 108 ntBASIC1.29□□□□□ -2.2
PDLIM4P50479 HSPE1P19-201ENST00000603327 295 ntBASIC1.29□□□□□ -2.2
PDLIM4P50479 MIR4251-201ENST00000635819 61 ntBASIC1.29□□□□□ -2.2
PDLIM4P50479 RNU6-1325P-201ENST00000364905 105 ntBASIC1.28□□□□□ -2.2
PDLIM4P50479 SNORD20-201ENST00000384550 80 ntBASIC1.28□□□□□ -2.2
PDLIM4P50479 RNU6-429P-201ENST00000384582 108 ntBASIC1.28□□□□□ -2.2
PDLIM4P50479 Y_RNA.531-201ENST00000384589 121 ntBASIC1.28□□□□□ -2.2
PDLIM4P50479 MIR548A3-201ENST00000385297 97 ntBASIC1.28□□□□□ -2.2
PDLIM4P50479 RNU6-955P-201ENST00000410497 104 ntBASIC1.28□□□□□ -2.2
Retrieved 100 of 98,524 protein–RNA pairs in 112.4 ms