Protein–RNA interactions for Protein: P49642

PRIM1, DNA primase small subunit, humanhuman

Known RBP Predictions only

Length 420 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRIM1P49642 RNU7-48P-201ENST00000458875 63 ntBASIC3.39□□□□□ -1.87
PRIM1P49642 AC139453.2-201ENST00000487255 133 ntBASIC3.39□□□□□ -1.87
PRIM1P49642 DLEU2_6.1-201ENST00000610536 112 ntBASIC3.39□□□□□ -1.87
PRIM1P49642 AP001362.1-201ENST00000625165 124 ntBASIC3.39□□□□□ -1.87
PRIM1P49642 DENND4A-202ENST00000443035 8665 ntTSL 1 (best) BASIC3.39□□□□□ -1.87
PRIM1P49642 AL161431.1-201ENST00000618966 4205 ntBASIC3.39□□□□□ -1.87
PRIM1P49642 MIR27B-201ENST00000385129 97 ntBASIC3.38□□□□□ -1.87
PRIM1P49642 SNORD67.1-201ENST00000516618 108 ntBASIC3.38□□□□□ -1.87
PRIM1P49642 MTND5P40-201ENST00000559945 246 ntBASIC3.38□□□□□ -1.87
PRIM1P49642 Y_RNA.168-201ENST00000363740 102 ntBASIC3.37□□□□□ -1.87
PRIM1P49642 SNORA38-201ENST00000363946 132 ntBASIC3.37□□□□□ -1.87
PRIM1P49642 MIR526A1-201ENST00000384897 85 ntBASIC3.37□□□□□ -1.87
PRIM1P49642 TRAJ50-201ENST00000390487 60 ntAPPRIS P1 BASIC3.37□□□□□ -1.87
PRIM1P49642 RNU7-137P-201ENST00000516788 62 ntBASIC3.37□□□□□ -1.87
PRIM1P49642 SEPT14P17-201ENST00000617978 177 ntBASIC3.37□□□□□ -1.87
PRIM1P49642 U4.3-201ENST00000621047 82 ntBASIC3.37□□□□□ -1.87
PRIM1P49642 IDE-201ENST00000265986 5877 ntAPPRIS P1 TSL 1 (best) BASIC3.37□□□□□ -1.87
PRIM1P49642 ZNF470-202ENST00000391709 6601 ntAPPRIS P1 TSL 5 BASIC3.37□□□□□ -1.87
PRIM1P49642 Y_RNA.94-201ENST00000363068 106 ntBASIC3.36□□□□□ -1.87
PRIM1P49642 RNA5SP138-201ENST00000365098 114 ntBASIC3.36□□□□□ -1.87
PRIM1P49642 RNA5SP425-201ENST00000410336 112 ntBASIC3.36□□□□□ -1.87
PRIM1P49642 HMGN1P33-201ENST00000432945 451 ntBASIC3.36□□□□□ -1.87
PRIM1P49642 SUB1P4-201ENST00000566062 339 ntBASIC3.36□□□□□ -1.87
PRIM1P49642 MIR4648-201ENST00000580107 72 ntBASIC3.36□□□□□ -1.87
PRIM1P49642 MIR4712-201ENST00000583750 82 ntBASIC3.36□□□□□ -1.87
PRIM1P49642 CYP19A1-220ENST00000613097 123 ntTSL 5 BASIC3.36□□□□□ -1.87
PRIM1P49642 CHD9-203ENST00000447540 11509 ntTSL 5 BASIC3.35□□□□□ -1.87
PRIM1P49642 RNU6-315P-201ENST00000362666 107 ntBASIC3.35□□□□□ -1.87
PRIM1P49642 RNU1-51P-201ENST00000365345 176 ntBASIC3.35□□□□□ -1.87
PRIM1P49642 U8.9-201ENST00000365667 134 ntBASIC3.35□□□□□ -1.87
PRIM1P49642 RNU1-148P-201ENST00000384472 162 ntBASIC3.35□□□□□ -1.87
PRIM1P49642 MIR597-201ENST00000384968 97 ntBASIC3.35□□□□□ -1.87
PRIM1P49642 MIR764-201ENST00000390811 85 ntBASIC3.35□□□□□ -1.87
PRIM1P49642 MIR1289-2-201ENST00000408360 111 ntBASIC3.35□□□□□ -1.87
PRIM1P49642 RN7SKP223-201ENST00000410582 62 ntBASIC3.35□□□□□ -1.87
PRIM1P49642 RPL31P63-201ENST00000422565 375 ntBASIC3.35□□□□□ -1.87
PRIM1P49642 RNU1-98P-201ENST00000458992 160 ntBASIC3.35□□□□□ -1.87
PRIM1P49642 MIR4635-201ENST00000583759 79 ntBASIC3.35□□□□□ -1.87
PRIM1P49642 AC012676.2-201ENST00000619258 186 ntBASIC3.35□□□□□ -1.87
PRIM1P49642 U1.36-201ENST00000620684 176 ntBASIC3.35□□□□□ -1.87
PRIM1P49642 AC008133.2-201ENST00000624540 351 ntBASIC3.35□□□□□ -1.87
PRIM1P49642 SLITRK6-201ENST00000400286 4318 ntAPPRIS P1 TSL 1 (best) BASIC3.34□□□□□ -1.87
PRIM1P49642 RNU6-1321P-201ENST00000390905 107 ntBASIC3.34□□□□□ -1.87
PRIM1P49642 snoU13.23-201ENST00000458863 104 ntBASIC3.34□□□□□ -1.87
PRIM1P49642 MIR3605-201ENST00000583214 100 ntBASIC3.34□□□□□ -1.87
PRIM1P49642 LIG4-203ENST00000442234 3982 ntAPPRIS P1 TSL 1 (best) BASIC3.34□□□□□ -1.87
PRIM1P49642 AC131280.1-202ENST00000624067 4211 ntBASIC3.33□□□□□ -1.88
PRIM1P49642 RNU7-26P-201ENST00000458980 63 ntBASIC3.33□□□□□ -1.88
PRIM1P49642 AC015712.3-201ENST00000559380 164 ntBASIC3.33□□□□□ -1.88
PRIM1P49642 AL513043.2-201ENST00000573941 143 ntBASIC3.33□□□□□ -1.88
PRIM1P49642 PIK3C2G-206ENST00000538779 4963 ntTSL 5 BASIC3.33□□□□□ -1.88
PRIM1P49642 GPR22-201ENST00000304402 2942 ntAPPRIS P1 TSL 1 (best) BASIC3.33□□□□□ -1.88
PRIM1P49642 SLC4A7-201ENST00000295736 7757 ntAPPRIS P3 TSL 1 (best) BASIC3.33□□□□□ -1.88
PRIM1P49642 SNORD38B-201ENST00000384690 67 ntBASIC3.32□□□□□ -1.88
PRIM1P49642 RNU6-1307P-201ENST00000391012 103 ntBASIC3.32□□□□□ -1.88
PRIM1P49642 MIR1283-2-201ENST00000408621 87 ntBASIC3.32□□□□□ -1.88
PRIM1P49642 AL162400.2-201ENST00000427547 157 ntTSL 3 BASIC3.32□□□□□ -1.88
PRIM1P49642 SNORD38B-202ENST00000625943 69 ntBASIC3.32□□□□□ -1.88
PRIM1P49642 TAB2-201ENST00000367456 4553 ntAPPRIS P1 TSL 5 BASIC3.32□□□□□ -1.88
PRIM1P49642 TAB3-205ENST00000378933 6671 ntAPPRIS P1 TSL 1 (best) BASIC3.32□□□□□ -1.88
PRIM1P49642 RNU6-112P-201ENST00000363599 104 ntBASIC3.31□□□□□ -1.88
PRIM1P49642 RNU6-524P-201ENST00000384270 107 ntBASIC3.31□□□□□ -1.88
PRIM1P49642 TRAJ61-201ENST00000390479 60 ntAPPRIS P1 BASIC3.31□□□□□ -1.88
PRIM1P49642 MIR1236-201ENST00000408340 102 ntBASIC3.31□□□□□ -1.88
PRIM1P49642 RNU6-519P-201ENST00000410590 108 ntBASIC3.31□□□□□ -1.88
PRIM1P49642 HMGN2P3-201ENST00000433603 273 ntBASIC3.31□□□□□ -1.88
PRIM1P49642 HMGN2P5-201ENST00000436882 273 ntBASIC3.31□□□□□ -1.88
PRIM1P49642 Z96811.1-201ENST00000445880 108 ntBASIC3.31□□□□□ -1.88
PRIM1P49642 RPS29P11-201ENST00000496507 171 ntBASIC3.31□□□□□ -1.88
PRIM1P49642 AL035078.1-202ENST00000531627 413 ntTSL 2 BASIC3.31□□□□□ -1.88
PRIM1P49642 MIR4764-201ENST00000580680 88 ntBASIC3.31□□□□□ -1.88
PRIM1P49642 AP000753.3-201ENST00000604083 169 ntBASIC3.31□□□□□ -1.88
PRIM1P49642 AC145423.2-201ENST00000610631 239 ntBASIC3.31□□□□□ -1.88
PRIM1P49642 AC022202.1-201ENST00000613515 211 ntBASIC3.31□□□□□ -1.88
PRIM1P49642 AC005336.3-201ENST00000623833 2679 ntBASIC3.31□□□□□ -1.88
PRIM1P49642 HSBP1P2-201ENST00000299671 229 ntBASIC3.3□□□□□ -1.88
PRIM1P49642 MIR518A2-201ENST00000384966 87 ntBASIC3.3□□□□□ -1.88
PRIM1P49642 AL591806.2-201ENST00000433122 173 ntBASIC3.3□□□□□ -1.88
PRIM1P49642 RNVU1-2-201ENST00000516326 135 ntBASIC3.3□□□□□ -1.88
PRIM1P49642 RNA5SP437-201ENST00000517249 129 ntBASIC3.3□□□□□ -1.88
PRIM1P49642 AC133485.1-201ENST00000567176 124 ntBASIC3.3□□□□□ -1.88
PRIM1P49642 AC140658.3-201ENST00000567603 271 ntBASIC3.3□□□□□ -1.88
PRIM1P49642 CERS6-AS1-202ENST00000594898 499 ntTSL 5 BASIC3.3□□□□□ -1.88
PRIM1P49642 OR51A4-202ENST00000641898 4393 ntAPPRIS P1 BASIC3.3□□□□□ -1.88
PRIM1P49642 RNU6-1123P-201ENST00000362347 106 ntBASIC3.29□□□□□ -1.88
PRIM1P49642 RNU6-296P-201ENST00000384608 107 ntBASIC3.29□□□□□ -1.88
PRIM1P49642 RNU6-380P-201ENST00000410207 107 ntBASIC3.29□□□□□ -1.88
PRIM1P49642 RNA5SP237-201ENST00000410414 113 ntBASIC3.29□□□□□ -1.88
PRIM1P49642 RNU6-322P-201ENST00000516010 103 ntBASIC3.29□□□□□ -1.88
PRIM1P49642 FAR1-204ENST00000532502 5820 ntTSL 2 BASIC3.29□□□□□ -1.88
PRIM1P49642 Y_RNA.545-201ENST00000384652 105 ntBASIC3.28□□□□□ -1.88
PRIM1P49642 MIR181B2-201ENST00000385004 89 ntBASIC3.28□□□□□ -1.88
PRIM1P49642 MIR520C-201ENST00000385005 87 ntBASIC3.28□□□□□ -1.88
PRIM1P49642 RNU6-613P-201ENST00000410412 108 ntBASIC3.28□□□□□ -1.88
PRIM1P49642 AC099513.1-201ENST00000490423 301 ntBASIC3.28□□□□□ -1.88
PRIM1P49642 RNU6-56P-201ENST00000516986 93 ntBASIC3.28□□□□□ -1.88
PRIM1P49642 SYTL2-230ENST00000634661 6672 ntTSL 5 BASIC3.28□□□□□ -1.88
PRIM1P49642 BRCA1-202ENST00000354071 4497 ntTSL 1 (best) BASIC3.28□□□□□ -1.88
PRIM1P49642 OR4K2-204ENST00000641885 8681 ntAPPRIS P1 BASIC3.28□□□□□ -1.88
PRIM1P49642 SNORD115-27-201ENST00000364430 82 ntBASIC3.27□□□□□ -1.89
Retrieved 100 of 98,524 protein–RNA pairs in 105 ms