Protein–RNA interactions for Protein: P48380

RFX3, Transcription factor RFX3, humanhuman

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3P48380 SNORD93-201ENST00000408813 74 ntBASIC0.09□□□□□ -2.4
RFX3P48380 RNU6-1190P-201ENST00000410811 104 ntBASIC0.09□□□□□ -2.4
RFX3P48380 ELOCP20-201ENST00000422460 345 ntBASIC0.09□□□□□ -2.4
RFX3P48380 RPL39P25-201ENST00000449384 154 ntBASIC0.09□□□□□ -2.4
RFX3P48380 RNU7-80P-201ENST00000459562 61 ntBASIC0.09□□□□□ -2.4
RFX3P48380 SERF1AP1-201ENST00000514575 187 ntBASIC0.09□□□□□ -2.4
RFX3P48380 RNY3P15-201ENST00000516297 97 ntBASIC0.09□□□□□ -2.4
RFX3P48380 Y_RNA.681-201ENST00000516445 113 ntBASIC0.09□□□□□ -2.4
RFX3P48380 AC069113.3-201ENST00000521019 150 ntBASIC0.09□□□□□ -2.4
RFX3P48380 MIR4768-201ENST00000585270 74 ntBASIC0.09□□□□□ -2.4
RFX3P48380 Y_RNA.42-201ENST00000362660 108 ntBASIC0.08□□□□□ -2.4
RFX3P48380 Y_RNA.430-201ENST00000384081 110 ntBASIC0.08□□□□□ -2.4
RFX3P48380 Y_RNA.454-201ENST00000384224 113 ntBASIC0.08□□□□□ -2.4
RFX3P48380 Y_RNA.455-201ENST00000384230 98 ntBASIC0.08□□□□□ -2.4
RFX3P48380 MIR215-201ENST00000384858 110 ntBASIC0.08□□□□□ -2.4
RFX3P48380 RNA5SP237-201ENST00000410414 113 ntBASIC0.08□□□□□ -2.4
RFX3P48380 RNU2-59P-201ENST00000410482 191 ntBASIC0.08□□□□□ -2.4
RFX3P48380 RNU4-83P-201ENST00000410863 133 ntBASIC0.08□□□□□ -2.4
RFX3P48380 RNU6-135P-201ENST00000516769 101 ntBASIC0.08□□□□□ -2.4
RFX3P48380 AC112693.2-201ENST00000556538 232 ntBASIC0.08□□□□□ -2.4
RFX3P48380 AC133485.4-201ENST00000561835 220 ntBASIC0.08□□□□□ -2.4
RFX3P48380 MIR3152-201ENST00000579801 74 ntBASIC0.08□□□□□ -2.4
RFX3P48380 MIR2909-201ENST00000617113 69 ntBASIC0.08□□□□□ -2.4
RFX3P48380 AL662814.1-201ENST00000617364 121 ntBASIC0.08□□□□□ -2.4
RFX3P48380 Y_RNA.30-201ENST00000362572 97 ntBASIC0.07□□□□□ -2.4
RFX3P48380 Y_RNA.128-201ENST00000363391 112 ntBASIC0.07□□□□□ -2.4
RFX3P48380 SNORA36.1-201ENST00000363424 132 ntBASIC0.07□□□□□ -2.4
RFX3P48380 Y_RNA.174-201ENST00000363781 105 ntBASIC0.07□□□□□ -2.4
RFX3P48380 Y_RNA.275-201ENST00000364726 110 ntBASIC0.07□□□□□ -2.4
RFX3P48380 RNU6-740P-201ENST00000364734 105 ntBASIC0.07□□□□□ -2.4
RFX3P48380 Y_RNA.351-201ENST00000365436 96 ntBASIC0.07□□□□□ -2.4
RFX3P48380 Y_RNA.419-201ENST00000384041 102 ntBASIC0.07□□□□□ -2.4
RFX3P48380 Y_RNA.542-201ENST00000384641 111 ntBASIC0.07□□□□□ -2.4
RFX3P48380 RPL21P38-201ENST00000418090 167 ntBASIC0.07□□□□□ -2.4
RFX3P48380 AC073261.1-201ENST00000429409 121 ntBASIC0.07□□□□□ -2.4
RFX3P48380 AP001282.2-201ENST00000616149 309 ntBASIC0.07□□□□□ -2.4
RFX3P48380 MIR8066-201ENST00000617280 78 ntBASIC0.07□□□□□ -2.4
RFX3P48380 MIR342-201ENST00000362212 99 ntBASIC0.06□□□□□ -2.4
RFX3P48380 Y_RNA.91-201ENST00000363042 107 ntBASIC0.06□□□□□ -2.4
RFX3P48380 Y_RNA.158-201ENST00000363651 101 ntBASIC0.06□□□□□ -2.4
RFX3P48380 Y_RNA.374-201ENST00000365606 101 ntBASIC0.06□□□□□ -2.4
RFX3P48380 RNU6-1228P-201ENST00000391014 107 ntBASIC0.06□□□□□ -2.4
RFX3P48380 Y_RNA.617-201ENST00000410920 90 ntBASIC0.06□□□□□ -2.4
RFX3P48380 AC113618.1-201ENST00000416747 285 ntBASIC0.06□□□□□ -2.4
RFX3P48380 AL512326.2-201ENST00000426359 151 ntBASIC0.06□□□□□ -2.4
RFX3P48380 RNU6-765P-201ENST00000516916 99 ntBASIC0.06□□□□□ -2.4
RFX3P48380 AL160413.1-201ENST00000622780 310 ntBASIC0.06□□□□□ -2.4
RFX3P48380 DEFB131A-201ENST00000334879 213 ntAPPRIS P1 TSL 1 (best) BASIC0.05□□□□□ -2.4
RFX3P48380 SNORA42.1-201ENST00000363515 137 ntBASIC0.05□□□□□ -2.4
RFX3P48380 Y_RNA.304-201ENST00000365011 112 ntBASIC0.05□□□□□ -2.4
RFX3P48380 RNU6-474P-201ENST00000384243 107 ntBASIC0.05□□□□□ -2.4
RFX3P48380 RNU6-1289P-201ENST00000384431 106 ntBASIC0.05□□□□□ -2.4
RFX3P48380 SNRPGP8-201ENST00000454064 226 ntBASIC0.05□□□□□ -2.4
RFX3P48380 RNU6-1338P-201ENST00000516328 91 ntBASIC0.05□□□□□ -2.4
RFX3P48380 DLEU2_5.2-201ENST00000610606 84 ntBASIC0.05□□□□□ -2.4
RFX3P48380 AC134503.1-201ENST00000633048 54 ntBASIC0.05□□□□□ -2.4
RFX3P48380 Y_RNA.84-201ENST00000363011 104 ntBASIC0.04□□□□□ -2.4
RFX3P48380 Y_RNA.210-201ENST00000364161 110 ntBASIC0.04□□□□□ -2.4
RFX3P48380 Y_RNA.280-201ENST00000364765 112 ntBASIC0.04□□□□□ -2.4
RFX3P48380 Y_RNA.460-201ENST00000384255 102 ntBASIC0.04□□□□□ -2.4
RFX3P48380 Y_RNA.572-201ENST00000384757 98 ntBASIC0.04□□□□□ -2.4
RFX3P48380 MIR616-201ENST00000385293 97 ntBASIC0.04□□□□□ -2.4
RFX3P48380 Y_RNA.618-201ENST00000410949 107 ntBASIC0.04□□□□□ -2.4
RFX3P48380 AL035258.1-201ENST00000439450 439 ntTSL 3 BASIC0.04□□□□□ -2.4
RFX3P48380 AL353742.1-201ENST00000453455 224 ntTSL 3 BASIC0.04□□□□□ -2.4
RFX3P48380 RNU6-848P-201ENST00000515948 107 ntBASIC0.04□□□□□ -2.4
RFX3P48380 RNU6-617P-201ENST00000516147 107 ntBASIC0.04□□□□□ -2.4
RFX3P48380 RNU6-473P-201ENST00000516164 107 ntBASIC0.04□□□□□ -2.4
RFX3P48380 RNU6-1049P-201ENST00000516414 107 ntBASIC0.04□□□□□ -2.4
RFX3P48380 hsa-mir-3130-1.1-201ENST00000579223 75 ntBASIC0.04□□□□□ -2.4
RFX3P48380 AC113195.1-201ENST00000579952 141 ntBASIC0.04□□□□□ -2.4
RFX3P48380 MIR5190-201ENST00000581537 80 ntBASIC0.04□□□□□ -2.4
RFX3P48380 MIR5197-201ENST00000583721 112 ntBASIC0.04□□□□□ -2.4
RFX3P48380 MIR6082-201ENST00000613604 109 ntBASIC0.04□□□□□ -2.4
RFX3P48380 KIF20B-201ENST00000260753 6306 ntAPPRIS P3 TSL 1 (best) BASIC0.03□□□□□ -2.4
RFX3P48380 Y_RNA.16-201ENST00000362421 102 ntBASIC0.03□□□□□ -2.4
RFX3P48380 RNU6-1292P-201ENST00000383856 107 ntBASIC0.03□□□□□ -2.4
RFX3P48380 Y_RNA.509-201ENST00000384506 99 ntBASIC0.03□□□□□ -2.4
RFX3P48380 SNORA20-201ENST00000384662 132 ntBASIC0.03□□□□□ -2.4
RFX3P48380 MIR644A-201ENST00000385262 94 ntBASIC0.03□□□□□ -2.4
RFX3P48380 TRAJ2-201ENST00000390535 66 ntAPPRIS P1 BASIC0.03□□□□□ -2.4
RFX3P48380 AL606845.1-201ENST00000404881 255 ntBASIC0.03□□□□□ -2.4
RFX3P48380 RNU6ATAC42P-201ENST00000408637 95 ntBASIC0.03□□□□□ -2.4
RFX3P48380 RNA5SP268-201ENST00000516828 124 ntBASIC0.03□□□□□ -2.4
RFX3P48380 MIR371B-201ENST00000638082 66 ntBASIC0.03□□□□□ -2.4
RFX3P48380 Y_RNA.44-201ENST00000362676 108 ntBASIC0.02□□□□□ -2.41
RFX3P48380 Y_RNA.64-201ENST00000362845 102 ntBASIC0.02□□□□□ -2.41
RFX3P48380 Y_RNA.199-201ENST00000364014 102 ntBASIC0.02□□□□□ -2.41
RFX3P48380 RNU5E-4P-201ENST00000364931 120 ntBASIC0.02□□□□□ -2.41
RFX3P48380 RNU6-806P-201ENST00000365147 105 ntBASIC0.02□□□□□ -2.41
RFX3P48380 RNU6-597P-201ENST00000365620 102 ntBASIC0.02□□□□□ -2.41
RFX3P48380 SNORA22B-201ENST00000383876 138 ntBASIC0.02□□□□□ -2.41
RFX3P48380 SNORA1-201ENST00000384107 130 ntBASIC0.02□□□□□ -2.41
RFX3P48380 SNORA79-201ENST00000408376 140 ntBASIC0.02□□□□□ -2.41
RFX3P48380 Y_RNA.622-201ENST00000411091 108 ntBASIC0.02□□□□□ -2.41
RFX3P48380 AC011825.2-201ENST00000583138 553 ntTSL 4 BASIC0.02□□□□□ -2.41
RFX3P48380 MIR6755-201ENST00000619993 66 ntBASIC0.02□□□□□ -2.41
RFX3P48380 AC091932.4-201ENST00000623386 200 ntBASIC0.02□□□□□ -2.41
RFX3P48380 MIR6828-201ENST00000636181 60 ntBASIC0.02□□□□□ -2.41
RFX3P48380 Y_RNA.13-201ENST00000362403 112 ntBASIC0.01□□□□□ -2.41
Retrieved 100 of 98,524 protein–RNA pairs in 125.3 ms