Protein–RNA interactions for Protein: P35498

SCN1A, Sodium channel protein type 1 subunit alpha, humanhuman

Predictions only

Length 2,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1AP35498 SNORD83.1-201ENST00000411362 77 ntBASIC0.26□□□□□ -2.37
SCN1AP35498 AL162399.1-201ENST00000426090 130 ntTSL 3 BASIC0.26□□□□□ -2.37
SCN1AP35498 AL512326.2-201ENST00000426359 151 ntBASIC0.26□□□□□ -2.37
SCN1AP35498 SNRPGP8-201ENST00000454064 226 ntBASIC0.26□□□□□ -2.37
SCN1AP35498 AL583859.1-201ENST00000455871 335 ntTSL 3 BASIC0.26□□□□□ -2.37
SCN1AP35498 TRBVB-201ENST00000477100 408 ntBASIC0.26□□□□□ -2.37
SCN1AP35498 SNORA25.12-201ENST00000516202 82 ntBASIC0.26□□□□□ -2.37
SCN1AP35498 AC020661.2-201ENST00000560114 134 ntBASIC0.26□□□□□ -2.37
SCN1AP35498 uc_338.16-201ENST00000621804 95 ntBASIC0.26□□□□□ -2.37
SCN1AP35498 SAMD9-203ENST00000620985 6754 ntAPPRIS P1 TSL 2 BASIC0.25□□□□□ -2.37
SCN1AP35498 Y_RNA.24-201ENST00000362508 103 ntBASIC0.25□□□□□ -2.37
SCN1AP35498 SNORA63C-201ENST00000364578 129 ntBASIC0.25□□□□□ -2.37
SCN1AP35498 Y_RNA.276-201ENST00000364732 109 ntBASIC0.25□□□□□ -2.37
SCN1AP35498 Y_RNA.304-201ENST00000365011 112 ntBASIC0.25□□□□□ -2.37
SCN1AP35498 RNU6-639P-201ENST00000384074 107 ntBASIC0.25□□□□□ -2.37
SCN1AP35498 RNA5SP299-201ENST00000391203 116 ntBASIC0.25□□□□□ -2.37
SCN1AP35498 AC015818.7-201ENST00000428754 109 ntBASIC0.25□□□□□ -2.37
SCN1AP35498 AC073261.1-201ENST00000429409 121 ntBASIC0.25□□□□□ -2.37
SCN1AP35498 AC087499.7-201ENST00000441958 109 ntBASIC0.25□□□□□ -2.37
SCN1AP35498 RNU6-1153P-201ENST00000516760 105 ntBASIC0.25□□□□□ -2.37
SCN1AP35498 RNU7-156P-201ENST00000517214 74 ntBASIC0.25□□□□□ -2.37
SCN1AP35498 RNU6-514P-201ENST00000384208 107 ntBASIC0.25□□□□□ -2.37
SCN1AP35498 RNU6ATAC6P-201ENST00000408132 126 ntBASIC0.25□□□□□ -2.37
SCN1AP35498 RNU6-177P-201ENST00000411257 104 ntBASIC0.25□□□□□ -2.37
SCN1AP35498 SNORA68.3-201ENST00000515906 83 ntBASIC0.25□□□□□ -2.37
SCN1AP35498 RNA5SP153-201ENST00000516498 76 ntBASIC0.25□□□□□ -2.37
SCN1AP35498 MIR6718-201ENST00000616153 80 ntBASIC0.25□□□□□ -2.37
SCN1AP35498 AC010332.2-201ENST00000613083 1904 ntBASIC0.24□□□□□ -2.37
SCN1AP35498 Y_RNA.23-201ENST00000362496 106 ntBASIC0.24□□□□□ -2.37
SCN1AP35498 RNU6-1309P-201ENST00000363305 108 ntBASIC0.24□□□□□ -2.37
SCN1AP35498 RNU6-818P-201ENST00000364837 108 ntBASIC0.24□□□□□ -2.37
SCN1AP35498 Y_RNA.483-201ENST00000384380 101 ntBASIC0.24□□□□□ -2.37
SCN1AP35498 RNU6-535P-201ENST00000384722 107 ntBASIC0.24□□□□□ -2.37
SCN1AP35498 RNU6-1319P-201ENST00000390855 104 ntBASIC0.24□□□□□ -2.37
SCN1AP35498 RNU6-747P-201ENST00000390928 104 ntBASIC0.24□□□□□ -2.37
SCN1AP35498 RNU6-241P-201ENST00000391148 104 ntBASIC0.24□□□□□ -2.37
SCN1AP35498 Y_RNA.679-201ENST00000516416 91 ntBASIC0.24□□□□□ -2.37
SCN1AP35498 AP003327.1-201ENST00000529684 127 ntBASIC0.24□□□□□ -2.37
SCN1AP35498 MIR5093-201ENST00000583199 100 ntBASIC0.24□□□□□ -2.37
SCN1AP35498 AC097639.2-201ENST00000603159 172 ntBASIC0.24□□□□□ -2.37
SCN1AP35498 RNU6-103P-201ENST00000363686 107 ntBASIC0.23□□□□□ -2.37
SCN1AP35498 SNORA20-201ENST00000384662 132 ntBASIC0.23□□□□□ -2.37
SCN1AP35498 SNORD93-201ENST00000408813 74 ntBASIC0.23□□□□□ -2.37
SCN1AP35498 RNU6-1165P-201ENST00000410119 107 ntBASIC0.23□□□□□ -2.37
SCN1AP35498 AC022523.2-201ENST00000561045 150 ntBASIC0.23□□□□□ -2.37
SCN1AP35498 CCDC73-201ENST00000335185 3849 ntAPPRIS P2 TSL 2 BASIC0.23□□□□□ -2.37
SCN1AP35498 Y_RNA.178-201ENST00000363832 102 ntBASIC0.23□□□□□ -2.37
SCN1AP35498 Y_RNA.237-201ENST00000364439 102 ntBASIC0.23□□□□□ -2.37
SCN1AP35498 RNU6-1327P-201ENST00000365302 105 ntBASIC0.23□□□□□ -2.37
SCN1AP35498 MIR606-201ENST00000384851 96 ntBASIC0.23□□□□□ -2.37
SCN1AP35498 MIR626-201ENST00000385032 94 ntBASIC0.23□□□□□ -2.37
SCN1AP35498 SNORD100-201ENST00000408573 76 ntBASIC0.23□□□□□ -2.37
SCN1AP35498 RNU6ATAC42P-201ENST00000408637 95 ntBASIC0.23□□□□□ -2.37
SCN1AP35498 RNU6-863P-201ENST00000515989 104 ntBASIC0.23□□□□□ -2.37
SCN1AP35498 AL442067.1-201ENST00000613261 223 ntBASIC0.23□□□□□ -2.37
SCN1AP35498 MIR4315-1-201ENST00000636800 73 ntBASIC0.23□□□□□ -2.37
SCN1AP35498 MIR4315-2-201ENST00000640925 73 ntBASIC0.23□□□□□ -2.37
SCN1AP35498 C9orf84-205ENST00000394779 5060 ntAPPRIS ALT2 TSL 2 BASIC0.22□□□□□ -2.37
SCN1AP35498 AC090625.1-201ENST00000357130 210 ntBASIC0.22□□□□□ -2.37
SCN1AP35498 Y_RNA.292-201ENST00000364904 97 ntBASIC0.22□□□□□ -2.37
SCN1AP35498 Y_RNA.567-201ENST00000384736 106 ntBASIC0.22□□□□□ -2.37
SCN1AP35498 RNA5SP261-201ENST00000410536 106 ntBASIC0.22□□□□□ -2.37
SCN1AP35498 MIR3129-201ENST00000581095 76 ntBASIC0.22□□□□□ -2.37
SCN1AP35498 Y_RNA.176-201ENST00000363815 109 ntBASIC0.21□□□□□ -2.38
SCN1AP35498 RNU6-949P-201ENST00000384040 107 ntBASIC0.21□□□□□ -2.38
SCN1AP35498 MIR563-201ENST00000385080 79 ntBASIC0.21□□□□□ -2.38
SCN1AP35498 MIR616-201ENST00000385293 97 ntBASIC0.21□□□□□ -2.38
SCN1AP35498 SNORD71-201ENST00000411292 86 ntBASIC0.21□□□□□ -2.38
SCN1AP35498 RNU7-80P-201ENST00000459562 61 ntBASIC0.21□□□□□ -2.38
SCN1AP35498 RNA5SP476-201ENST00000516613 103 ntBASIC0.21□□□□□ -2.38
SCN1AP35498 AC091932.4-201ENST00000623386 200 ntBASIC0.21□□□□□ -2.38
SCN1AP35498 RNU6-740P-201ENST00000364734 105 ntBASIC0.21□□□□□ -2.38
SCN1AP35498 Y_RNA.352-201ENST00000365439 102 ntBASIC0.21□□□□□ -2.38
SCN1AP35498 RNU6-597P-201ENST00000365620 102 ntBASIC0.21□□□□□ -2.38
SCN1AP35498 Y_RNA.376-201ENST00000365638 108 ntBASIC0.21□□□□□ -2.38
SCN1AP35498 Y_RNA.412-201ENST00000384001 104 ntBASIC0.21□□□□□ -2.38
SCN1AP35498 Y_RNA.572-201ENST00000384757 98 ntBASIC0.21□□□□□ -2.38
SCN1AP35498 MIR938-201ENST00000401216 83 ntBASIC0.21□□□□□ -2.38
SCN1AP35498 MIR1302-6-201ENST00000408466 90 ntBASIC0.21□□□□□ -2.38
SCN1AP35498 SNORA31.14-201ENST00000516728 116 ntBASIC0.21□□□□□ -2.38
SCN1AP35498 MIR4643-201ENST00000577473 78 ntBASIC0.21□□□□□ -2.38
SCN1AP35498 AL596211.1-201ENST00000569873 2277 ntBASIC0.2□□□□□ -2.38
SCN1AP35498 Y_RNA.274-201ENST00000364714 101 ntBASIC0.2□□□□□ -2.38
SCN1AP35498 MT-TW-201ENST00000387382 68 ntBASIC0.2□□□□□ -2.38
SCN1AP35498 RNU6-913P-201ENST00000390913 95 ntBASIC0.2□□□□□ -2.38
SCN1AP35498 RNU6-1228P-201ENST00000391014 107 ntBASIC0.2□□□□□ -2.38
SCN1AP35498 Y_RNA.617-201ENST00000410920 90 ntBASIC0.2□□□□□ -2.38
SCN1AP35498 Y_RNA.681-201ENST00000516445 113 ntBASIC0.2□□□□□ -2.38
SCN1AP35498 RNU7-70P-201ENST00000516941 66 ntBASIC0.2□□□□□ -2.38
SCN1AP35498 AC004148.1-201ENST00000571506 398 ntTSL 5 BASIC0.2□□□□□ -2.38
SCN1AP35498 AC015818.4-201ENST00000580931 353 ntTSL 5 BASIC0.2□□□□□ -2.38
SCN1AP35498 MIR4491-201ENST00000581087 68 ntBASIC0.2□□□□□ -2.38
SCN1AP35498 MIR6759-201ENST00000638110 65 ntBASIC0.2□□□□□ -2.38
SCN1AP35498 Y_RNA.277-201ENST00000364754 102 ntBASIC0.2□□□□□ -2.38
SCN1AP35498 RNU6-211P-201ENST00000384047 107 ntBASIC0.2□□□□□ -2.38
SCN1AP35498 RNU6-447P-201ENST00000410293 104 ntBASIC0.2□□□□□ -2.38
SCN1AP35498 RNU6-1118P-201ENST00000410382 104 ntBASIC0.2□□□□□ -2.38
SCN1AP35498 RNU6-1076P-201ENST00000410397 104 ntBASIC0.2□□□□□ -2.38
SCN1AP35498 RNU6-355P-201ENST00000410427 104 ntBASIC0.2□□□□□ -2.38
SCN1AP35498 RNU6-791P-201ENST00000410467 104 ntBASIC0.2□□□□□ -2.38
Retrieved 100 of 98,524 protein–RNA pairs in 172.6 ms