Protein–RNA interactions for Protein: P31269

HOXA9, Homeobox protein Hox-A9, humanhuman

Predictions only

Length 272 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA9P31269 Y_RNA.679-201ENST00000516416 91 ntBASIC0.46□□□□□ -2.34
HOXA9P31269 Z83818.1-201ENST00000603584 150 ntBASIC0.46□□□□□ -2.34
HOXA9P31269 MIR8087-201ENST00000612745 78 ntBASIC0.46□□□□□ -2.34
HOXA9P31269 SNORD38B-202ENST00000625943 69 ntBASIC0.46□□□□□ -2.34
HOXA9P31269 CEP290-203ENST00000547691 5968 ntTSL 1 (best) BASIC0.45□□□□□ -2.34
HOXA9P31269 AP003174.1-201ENST00000306533 376 ntTSL 2 BASIC0.45□□□□□ -2.34
HOXA9P31269 Y_RNA.199-201ENST00000364014 102 ntBASIC0.45□□□□□ -2.34
HOXA9P31269 Y_RNA.352-201ENST00000365439 102 ntBASIC0.45□□□□□ -2.34
HOXA9P31269 RNU6-1189P-201ENST00000383958 107 ntBASIC0.45□□□□□ -2.34
HOXA9P31269 Y_RNA.410-201ENST00000383992 113 ntBASIC0.45□□□□□ -2.34
HOXA9P31269 SNORA26-201ENST00000391286 122 ntBASIC0.45□□□□□ -2.34
HOXA9P31269 RNU7-62P-201ENST00000458856 62 ntBASIC0.45□□□□□ -2.34
HOXA9P31269 SNORD127-201ENST00000458892 86 ntBASIC0.45□□□□□ -2.34
HOXA9P31269 RNU7-53P-201ENST00000516705 60 ntBASIC0.45□□□□□ -2.34
HOXA9P31269 AC018659.1-201ENST00000551083 169 ntBASIC0.45□□□□□ -2.34
HOXA9P31269 MIR4771-2-201ENST00000577758 74 ntBASIC0.45□□□□□ -2.34
HOXA9P31269 MIR4771-1-201ENST00000582617 74 ntBASIC0.45□□□□□ -2.34
HOXA9P31269 Y_RNA.115-201ENST00000363272 98 ntBASIC0.44□□□□□ -2.34
HOXA9P31269 RNU6-1309P-201ENST00000363305 108 ntBASIC0.44□□□□□ -2.34
HOXA9P31269 SNORA63-201ENST00000363450 132 ntBASIC0.44□□□□□ -2.34
HOXA9P31269 RNY1P8-201ENST00000383970 114 ntBASIC0.44□□□□□ -2.34
HOXA9P31269 MIR568-201ENST00000385036 95 ntBASIC0.44□□□□□ -2.34
HOXA9P31269 SNORA26.6-201ENST00000391256 115 ntBASIC0.44□□□□□ -2.34
HOXA9P31269 RNU2-38P-201ENST00000410856 79 ntBASIC0.44□□□□□ -2.34
HOXA9P31269 RNU7-56P-201ENST00000458744 62 ntBASIC0.44□□□□□ -2.34
HOXA9P31269 RNU7-45P-201ENST00000459460 63 ntBASIC0.44□□□□□ -2.34
HOXA9P31269 RNU7-96P-201ENST00000459535 64 ntBASIC0.44□□□□□ -2.34
HOXA9P31269 RNY3P16-201ENST00000516338 101 ntBASIC0.44□□□□□ -2.34
HOXA9P31269 MIR4804-201ENST00000581683 73 ntBASIC0.44□□□□□ -2.34
HOXA9P31269 MIR4676-201ENST00000583078 72 ntBASIC0.44□□□□□ -2.34
HOXA9P31269 AL442067.1-201ENST00000613261 223 ntBASIC0.44□□□□□ -2.34
HOXA9P31269 U6.104-201ENST00000637979 90 ntBASIC0.44□□□□□ -2.34
HOXA9P31269 AC010332.2-201ENST00000613083 1904 ntBASIC0.43□□□□□ -2.34
HOXA9P31269 MIR342-201ENST00000362212 99 ntBASIC0.43□□□□□ -2.34
HOXA9P31269 Y_RNA.7-201ENST00000362352 102 ntBASIC0.43□□□□□ -2.34
HOXA9P31269 SNORA1.1-201ENST00000364671 133 ntBASIC0.43□□□□□ -2.34
HOXA9P31269 Y_RNA.292-201ENST00000364904 97 ntBASIC0.43□□□□□ -2.34
HOXA9P31269 Y_RNA.459-201ENST00000384251 102 ntBASIC0.43□□□□□ -2.34
HOXA9P31269 MIR520F-201ENST00000384824 87 ntBASIC0.43□□□□□ -2.34
HOXA9P31269 MIR588-201ENST00000384900 83 ntBASIC0.43□□□□□ -2.34
HOXA9P31269 MIR520H-201ENST00000385126 88 ntBASIC0.43□□□□□ -2.34
HOXA9P31269 SNORD12C-201ENST00000386307 89 ntBASIC0.43□□□□□ -2.34
HOXA9P31269 MIR548I3-201ENST00000408378 149 ntBASIC0.43□□□□□ -2.34
HOXA9P31269 snoU13.2-201ENST00000459201 104 ntBASIC0.43□□□□□ -2.34
HOXA9P31269 RNU6-977P-201ENST00000516411 103 ntBASIC0.43□□□□□ -2.34
HOXA9P31269 MIR3129-201ENST00000581095 76 ntBASIC0.43□□□□□ -2.34
HOXA9P31269 G3BP1-214ENST00000627077 114 ntTSL 5 BASIC0.43□□□□□ -2.34
HOXA9P31269 Y_RNA.54-201ENST00000362766 105 ntBASIC0.42□□□□□ -2.34
HOXA9P31269 Y_RNA.133-201ENST00000363428 110 ntBASIC0.42□□□□□ -2.34
HOXA9P31269 Y_RNA.262-201ENST00000364641 102 ntBASIC0.42□□□□□ -2.34
HOXA9P31269 RNU6-716P-201ENST00000365621 103 ntBASIC0.42□□□□□ -2.34
HOXA9P31269 RNU6-1011P-201ENST00000384668 107 ntBASIC0.42□□□□□ -2.34
HOXA9P31269 MIR573-201ENST00000384964 99 ntBASIC0.42□□□□□ -2.34
HOXA9P31269 MIR563-201ENST00000385080 79 ntBASIC0.42□□□□□ -2.34
HOXA9P31269 RNA5SP222-201ENST00000411039 105 ntBASIC0.42□□□□□ -2.34
HOXA9P31269 AL135790.1-201ENST00000427161 157 ntTSL 3 BASIC0.42□□□□□ -2.34
HOXA9P31269 MTND1P19-201ENST00000511780 315 ntBASIC0.42□□□□□ -2.34
HOXA9P31269 AL360085.1-201ENST00000604713 532 ntBASIC0.42□□□□□ -2.34
HOXA9P31269 MIR6717-201ENST00000622747 73 ntBASIC0.42□□□□□ -2.34
HOXA9P31269 RNY4P28-201ENST00000365281 93 ntBASIC0.41□□□□□ -2.34
HOXA9P31269 Y_RNA.351-201ENST00000365436 96 ntBASIC0.41□□□□□ -2.34
HOXA9P31269 RNU4-17P-201ENST00000365598 141 ntBASIC0.41□□□□□ -2.34
HOXA9P31269 Y_RNA.562-201ENST00000384695 113 ntBASIC0.41□□□□□ -2.34
HOXA9P31269 RNU6-1165P-201ENST00000410119 107 ntBASIC0.41□□□□□ -2.34
HOXA9P31269 RNU4-43P-201ENST00000410628 137 ntBASIC0.41□□□□□ -2.34
HOXA9P31269 RNU6-177P-201ENST00000411257 104 ntBASIC0.41□□□□□ -2.34
HOXA9P31269 AL136320.1-201ENST00000417273 430 ntTSL 3 BASIC0.41□□□□□ -2.34
HOXA9P31269 MIR18B-201ENST00000454574 71 ntBASIC0.41□□□□□ -2.34
HOXA9P31269 AC012668.1-201ENST00000457625 228 ntTSL 3 BASIC0.41□□□□□ -2.34
HOXA9P31269 5S_rRNA.15-201ENST00000611169 127 ntBASIC0.41□□□□□ -2.34
HOXA9P31269 MIR30D-201ENST00000362283 70 ntBASIC0.4□□□□□ -2.35
HOXA9P31269 RNU6-728P-201ENST00000365375 104 ntBASIC0.4□□□□□ -2.35
HOXA9P31269 RNU6-597P-201ENST00000365620 102 ntBASIC0.4□□□□□ -2.35
HOXA9P31269 RPS27-201ENST00000368567 350 ntAPPRIS P1 TSL 1 (best) BASIC0.4□□□□□ -2.35
HOXA9P31269 Y_RNA.539-201ENST00000384635 107 ntBASIC0.4□□□□□ -2.35
HOXA9P31269 Y_RNA.618-201ENST00000410949 107 ntBASIC0.4□□□□□ -2.35
HOXA9P31269 AC010177.1-201ENST00000547819 366 ntTSL 3 BASIC0.4□□□□□ -2.35
HOXA9P31269 MIR4744-201ENST00000581563 82 ntBASIC0.4□□□□□ -2.35
HOXA9P31269 MIR5197-201ENST00000583721 112 ntBASIC0.4□□□□□ -2.35
HOXA9P31269 AL365205.2-201ENST00000594586 68 ntBASIC0.4□□□□□ -2.35
HOXA9P31269 AC008608.1-201ENST00000603910 127 ntBASIC0.4□□□□□ -2.35
HOXA9P31269 AL109933.3-201ENST00000619095 188 ntBASIC0.4□□□□□ -2.35
HOXA9P31269 C9orf84-203ENST00000374287 4721 ntAPPRIS P3 TSL 5 BASIC0.39□□□□□ -2.35
HOXA9P31269 Y_RNA.30-201ENST00000362572 97 ntBASIC0.39□□□□□ -2.35
HOXA9P31269 Y_RNA.149-201ENST00000363558 117 ntBASIC0.39□□□□□ -2.35
HOXA9P31269 Y_RNA.308-201ENST00000365043 101 ntBASIC0.39□□□□□ -2.35
HOXA9P31269 RNU6-1292P-201ENST00000383856 107 ntBASIC0.39□□□□□ -2.35
HOXA9P31269 RNU6-945P-201ENST00000383947 107 ntBASIC0.39□□□□□ -2.35
HOXA9P31269 SNORA36.2-201ENST00000384004 127 ntBASIC0.39□□□□□ -2.35
HOXA9P31269 Y_RNA.542-201ENST00000384641 111 ntBASIC0.39□□□□□ -2.35
HOXA9P31269 TRAJ2-201ENST00000390535 66 ntAPPRIS P1 BASIC0.39□□□□□ -2.35
HOXA9P31269 RNU7-185P-201ENST00000459215 60 ntBASIC0.39□□□□□ -2.35
HOXA9P31269 AC137770.1-201ENST00000504620 530 ntTSL 3 BASIC0.39□□□□□ -2.35
HOXA9P31269 AC004148.1-201ENST00000571506 398 ntTSL 5 BASIC0.39□□□□□ -2.35
HOXA9P31269 MIR3612-201ENST00000579753 87 ntBASIC0.39□□□□□ -2.35
HOXA9P31269 AC091932.4-201ENST00000623386 200 ntBASIC0.39□□□□□ -2.35
HOXA9P31269 MIR18A-201ENST00000362310 71 ntBASIC0.38□□□□□ -2.35
HOXA9P31269 Y_RNA.85-201ENST00000363014 111 ntBASIC0.38□□□□□ -2.35
HOXA9P31269 RNU6-103P-201ENST00000363686 107 ntBASIC0.38□□□□□ -2.35
HOXA9P31269 SNORD18A-201ENST00000363753 72 ntBASIC0.38□□□□□ -2.35
Retrieved 100 of 98,524 protein–RNA pairs in 103.2 ms