Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 UHRF1BP1L-203ENST00000545232 4088 ntTSL 1 (best) BASIC2.1□□□□□ -2.07
COL6A1P12109 Y_RNA.370-201ENST00000365589 108 ntBASIC2.1□□□□□ -2.07
COL6A1P12109 RNU6-296P-201ENST00000384608 107 ntBASIC2.1□□□□□ -2.07
COL6A1P12109 MIR548D2-201ENST00000384955 97 ntBASIC2.1□□□□□ -2.07
COL6A1P12109 MIR660-201ENST00000385235 97 ntBASIC2.1□□□□□ -2.07
COL6A1P12109 RPL31P63-201ENST00000422565 375 ntBASIC2.1□□□□□ -2.07
COL6A1P12109 RNU6-893P-201ENST00000458841 100 ntBASIC2.1□□□□□ -2.07
COL6A1P12109 RNU2-11P-201ENST00000459191 187 ntBASIC2.1□□□□□ -2.07
COL6A1P12109 RNU2-35P-201ENST00000516446 142 ntBASIC2.1□□□□□ -2.07
COL6A1P12109 RNU7-53P-201ENST00000516705 60 ntBASIC2.1□□□□□ -2.07
COL6A1P12109 IGHVII-40-1-201ENST00000517316 58 ntBASIC2.1□□□□□ -2.07
COL6A1P12109 DNAJC19P9-201ENST00000555084 351 ntBASIC2.1□□□□□ -2.07
COL6A1P12109 AC006254.2-201ENST00000603259 279 ntBASIC2.1□□□□□ -2.07
COL6A1P12109 AC103810.8-201ENST00000607347 118 ntBASIC2.1□□□□□ -2.07
COL6A1P12109 AC021613.1-201ENST00000623880 111 ntBASIC2.1□□□□□ -2.07
COL6A1P12109 PTPRQ-209ENST00000616559 8165 ntTSL 5 BASIC2.1□□□□□ -2.07
COL6A1P12109 USP53-202ENST00000450251 6072 ntAPPRIS P1 TSL 5 BASIC2.09□□□□□ -2.07
COL6A1P12109 PGBD4P5-201ENST00000445958 426 ntBASIC2.09□□□□□ -2.07
COL6A1P12109 AC093850.1-201ENST00000454121 251 ntBASIC2.09□□□□□ -2.07
COL6A1P12109 AC025033.1-201ENST00000463883 194 ntBASIC2.09□□□□□ -2.07
COL6A1P12109 RPS29P11-201ENST00000496507 171 ntBASIC2.09□□□□□ -2.07
COL6A1P12109 HSPE1P19-201ENST00000603327 295 ntBASIC2.09□□□□□ -2.07
COL6A1P12109 SNORD3E-202ENST00000627253 216 ntBASIC2.09□□□□□ -2.07
COL6A1P12109 PLD1-217ENST00000627725 174 ntTSL 5 BASIC2.09□□□□□ -2.07
COL6A1P12109 U8.6-201ENST00000364939 135 ntBASIC2.08□□□□□ -2.08
COL6A1P12109 Y_RNA.328-201ENST00000365208 113 ntBASIC2.08□□□□□ -2.08
COL6A1P12109 Y_RNA.494-201ENST00000384432 111 ntBASIC2.08□□□□□ -2.08
COL6A1P12109 RNU6-1067P-201ENST00000384752 107 ntBASIC2.08□□□□□ -2.08
COL6A1P12109 MIR934-201ENST00000401241 83 ntBASIC2.08□□□□□ -2.08
COL6A1P12109 RNA5SP261-201ENST00000410536 106 ntBASIC2.08□□□□□ -2.08
COL6A1P12109 RNA5SP144-201ENST00000410846 116 ntBASIC2.08□□□□□ -2.08
COL6A1P12109 RNU7-67P-201ENST00000459003 62 ntBASIC2.08□□□□□ -2.08
COL6A1P12109 snoU13.18-201ENST00000459483 104 ntBASIC2.08□□□□□ -2.08
COL6A1P12109 AC068339.1-201ENST00000526965 141 ntBASIC2.08□□□□□ -2.08
COL6A1P12109 AC022523.2-201ENST00000561045 150 ntBASIC2.08□□□□□ -2.08
COL6A1P12109 MIR5009-201ENST00000578736 100 ntBASIC2.08□□□□□ -2.08
COL6A1P12109 MIR3152-201ENST00000579801 74 ntBASIC2.08□□□□□ -2.08
COL6A1P12109 MIR8081-201ENST00000611533 95 ntBASIC2.08□□□□□ -2.08
COL6A1P12109 AP000648.3-201ENST00000623539 4507 ntBASIC2.08□□□□□ -2.08
COL6A1P12109 SI-201ENST00000264382 6011 ntAPPRIS P1 TSL 1 (best) BASIC2.08□□□□□ -2.08
COL6A1P12109 RNU6-1104P-201ENST00000384723 104 ntBASIC2.07□□□□□ -2.08
COL6A1P12109 MT-TI-201ENST00000387365 69 ntBASIC2.07□□□□□ -2.08
COL6A1P12109 RNA5SP338-201ENST00000410495 85 ntBASIC2.07□□□□□ -2.08
COL6A1P12109 snoU13.9-201ENST00000458927 103 ntBASIC2.07□□□□□ -2.08
COL6A1P12109 RNU7-6P-201ENST00000516845 62 ntBASIC2.07□□□□□ -2.08
COL6A1P12109 HOTAIRM1_4.1-201ENST00000617934 102 ntBASIC2.07□□□□□ -2.08
COL6A1P12109 TBL1XR1-208ENST00000430069 7948 ntAPPRIS P1 TSL 1 (best) BASIC2.07□□□□□ -2.08
COL6A1P12109 MIR424-201ENST00000362227 98 ntBASIC2.06□□□□□ -2.08
COL6A1P12109 Y_RNA.344-201ENST00000365381 112 ntBASIC2.06□□□□□ -2.08
COL6A1P12109 Y_RNA.544-201ENST00000384650 113 ntBASIC2.06□□□□□ -2.08
COL6A1P12109 RPS29P29-201ENST00000456396 171 ntBASIC2.06□□□□□ -2.08
COL6A1P12109 RNU7-95P-201ENST00000459222 64 ntBASIC2.06□□□□□ -2.08
COL6A1P12109 C16orf97-206ENST00000622950 415 ntTSL 2 BASIC2.06□□□□□ -2.08
COL6A1P12109 TEX15-203ENST00000638951 11341 ntAPPRIS P1 TSL 5 BASIC2.06□□□□□ -2.08
COL6A1P12109 Y_RNA.299-201ENST00000364973 94 ntBASIC2.05□□□□□ -2.08
COL6A1P12109 RNU6-1319P-201ENST00000390855 104 ntBASIC2.05□□□□□ -2.08
COL6A1P12109 RNU6-747P-201ENST00000390928 104 ntBASIC2.05□□□□□ -2.08
COL6A1P12109 RNU6-241P-201ENST00000391148 104 ntBASIC2.05□□□□□ -2.08
COL6A1P12109 MIR1276-201ENST00000408707 83 ntBASIC2.05□□□□□ -2.08
COL6A1P12109 MIR1912-201ENST00000410389 80 ntBASIC2.05□□□□□ -2.08
COL6A1P12109 RNU6-177P-201ENST00000411257 104 ntBASIC2.05□□□□□ -2.08
COL6A1P12109 SNORD123-201ENST00000459473 70 ntBASIC2.05□□□□□ -2.08
COL6A1P12109 AC099513.1-201ENST00000490423 301 ntBASIC2.05□□□□□ -2.08
COL6A1P12109 RNU1-40P-201ENST00000516816 164 ntBASIC2.05□□□□□ -2.08
COL6A1P12109 RNU1-97P-201ENST00000516872 164 ntBASIC2.05□□□□□ -2.08
COL6A1P12109 RNU6-958P-201ENST00000516995 106 ntBASIC2.05□□□□□ -2.08
COL6A1P12109 AC004812.1-201ENST00000540773 146 ntBASIC2.05□□□□□ -2.08
COL6A1P12109 AC007370.2-201ENST00000506899 2694 ntTSL 5 BASIC2.05□□□□□ -2.08
COL6A1P12109 MIER3-204ENST00000381226 5210 ntAPPRIS ALT1 TSL 1 (best) BASIC2.04□□□□□ -2.08
COL6A1P12109 RNA5SP37-201ENST00000365420 130 ntBASIC2.04□□□□□ -2.08
COL6A1P12109 Y_RNA.531-201ENST00000384589 121 ntBASIC2.04□□□□□ -2.08
COL6A1P12109 RPL39P25-201ENST00000449384 154 ntBASIC2.04□□□□□ -2.08
COL6A1P12109 RPS23P4-201ENST00000487908 423 ntBASIC2.04□□□□□ -2.08
COL6A1P12109 BX248123.2-201ENST00000606318 124 ntBASIC2.04□□□□□ -2.08
COL6A1P12109 AL162726.3-218ENST00000636401 95 ntBASIC2.04□□□□□ -2.08
COL6A1P12109 DYNC2H1-203ENST00000398093 12945 ntAPPRIS P3 TSL 5 BASIC2.03□□□□□ -2.08
COL6A1P12109 RNU6-439P-201ENST00000384188 106 ntBASIC2.03□□□□□ -2.08
COL6A1P12109 MIR526A1-201ENST00000384897 85 ntBASIC2.03□□□□□ -2.08
COL6A1P12109 RNU6-360P-201ENST00000390944 104 ntBASIC2.03□□□□□ -2.08
COL6A1P12109 RNY4P30-201ENST00000410216 95 ntBASIC2.03□□□□□ -2.08
COL6A1P12109 RNU7-113P-201ENST00000459273 62 ntBASIC2.03□□□□□ -2.08
COL6A1P12109 MIR5582-201ENST00000579697 68 ntBASIC2.03□□□□□ -2.08
COL6A1P12109 MIR4285-201ENST00000581001 85 ntBASIC2.03□□□□□ -2.08
COL6A1P12109 AC012493.3-201ENST00000604494 112 ntBASIC2.03□□□□□ -2.08
COL6A1P12109 AP001318.4-201ENST00000616637 121 ntBASIC2.03□□□□□ -2.08
COL6A1P12109 AC243994.1-201ENST00000618627 109 ntBASIC2.03□□□□□ -2.08
COL6A1P12109 SPTSSB-205ENST00000620149 231 ntAPPRIS P1 BASIC2.03□□□□□ -2.08
COL6A1P12109 uc_338.20-201ENST00000621563 178 ntBASIC2.03□□□□□ -2.08
COL6A1P12109 Metazoa_SRP.32-201ENST00000622685 286 ntBASIC2.03□□□□□ -2.08
COL6A1P12109 KIAA1107-201ENST00000370378 4622 ntTSL 5 BASIC2.02□□□□□ -2.09
COL6A1P12109 Y_RNA.78-201ENST00000362970 110 ntBASIC2.02□□□□□ -2.09
COL6A1P12109 RNU6-392P-201ENST00000364926 101 ntBASIC2.02□□□□□ -2.09
COL6A1P12109 SNORA24-201ENST00000384096 131 ntBASIC2.02□□□□□ -2.09
COL6A1P12109 Y_RNA.507-201ENST00000384500 99 ntBASIC2.02□□□□□ -2.09
COL6A1P12109 POLR2J4-204ENST00000418424 324 ntBASIC2.02□□□□□ -2.09
COL6A1P12109 AL512326.2-201ENST00000426359 151 ntBASIC2.02□□□□□ -2.09
COL6A1P12109 RNU7-73P-201ENST00000458743 63 ntBASIC2.02□□□□□ -2.09
COL6A1P12109 RNU6-717P-201ENST00000459076 104 ntBASIC2.02□□□□□ -2.09
COL6A1P12109 SNORA31.4-201ENST00000516049 129 ntBASIC2.02□□□□□ -2.09
COL6A1P12109 SNORA40.13-201ENST00000516379 120 ntBASIC2.02□□□□□ -2.09
Retrieved 100 of 98,524 protein–RNA pairs in 120.3 ms