Protein–RNA interactions for Protein: P0CW19

LIMS3, LIM and senescent cell antigen-like-containing domain protein 3, humanhuman

Predictions only

Length 117 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3P0CW19 SNORA18-201ENST00000384416 132 ntBASIC-0.83□□□□□ -2.54
LIMS3P0CW19 MIR1912-201ENST00000410389 80 ntBASIC-0.83□□□□□ -2.54
LIMS3P0CW19 RNU6-1086P-201ENST00000410930 100 ntBASIC-0.83□□□□□ -2.54
LIMS3P0CW19 MTND1P14-201ENST00000427400 950 ntBASIC-0.83□□□□□ -2.54
LIMS3P0CW19 RNU6-764P-201ENST00000516396 105 ntBASIC-0.83□□□□□ -2.54
LIMS3P0CW19 Y_RNA.691-201ENST00000516611 103 ntBASIC-0.83□□□□□ -2.54
LIMS3P0CW19 RPS29P30-201ENST00000600975 111 ntBASIC-0.83□□□□□ -2.54
LIMS3P0CW19 WT1-AS_8.1-201ENST00000615200 275 ntBASIC-0.83□□□□□ -2.54
LIMS3P0CW19 AL391099.1-201ENST00000624635 187 ntBASIC-0.83□□□□□ -2.54
LIMS3P0CW19 MIR4272-201ENST00000635924 64 ntBASIC-0.83□□□□□ -2.54
LIMS3P0CW19 SNORA22.1-201ENST00000362701 134 ntBASIC-0.84□□□□□ -2.54
LIMS3P0CW19 Y_RNA.56-201ENST00000362798 112 ntBASIC-0.84□□□□□ -2.54
LIMS3P0CW19 Y_RNA.286-201ENST00000364813 102 ntBASIC-0.84□□□□□ -2.54
LIMS3P0CW19 MIR559-201ENST00000385188 96 ntBASIC-0.84□□□□□ -2.54
LIMS3P0CW19 SNORD110-201ENST00000408189 75 ntBASIC-0.84□□□□□ -2.54
LIMS3P0CW19 AC006210.1-201ENST00000424882 111 ntBASIC-0.84□□□□□ -2.54
LIMS3P0CW19 MTND1P34-201ENST00000438556 671 ntBASIC-0.84□□□□□ -2.54
LIMS3P0CW19 MTND4P17-201ENST00000470444 350 ntBASIC-0.84□□□□□ -2.54
LIMS3P0CW19 MIR5692C2-201ENST00000577959 77 ntBASIC-0.84□□□□□ -2.54
LIMS3P0CW19 C8orf59P2-201ENST00000603441 271 ntBASIC-0.84□□□□□ -2.54
LIMS3P0CW19 AC091932.4-201ENST00000623386 200 ntBASIC-0.84□□□□□ -2.54
LIMS3P0CW19 RNU4-73P-201ENST00000363164 141 ntBASIC-0.85□□□□□ -2.55
LIMS3P0CW19 Y_RNA.143-201ENST00000363520 106 ntBASIC-0.85□□□□□ -2.55
LIMS3P0CW19 Y_RNA.477-201ENST00000384352 108 ntBASIC-0.85□□□□□ -2.55
LIMS3P0CW19 Y_RNA.653-201ENST00000459091 95 ntBASIC-0.85□□□□□ -2.55
LIMS3P0CW19 Y_RNA.637-201ENST00000459424 114 ntBASIC-0.85□□□□□ -2.55
LIMS3P0CW19 U8.20-201ENST00000459445 131 ntBASIC-0.85□□□□□ -2.55
LIMS3P0CW19 AC114755.3-201ENST00000481111 251 ntBASIC-0.85□□□□□ -2.55
LIMS3P0CW19 DLEU2_5.2-201ENST00000610606 84 ntBASIC-0.85□□□□□ -2.55
LIMS3P0CW19 AC022079.1-201ENST00000621546 602 ntBASIC-0.85□□□□□ -2.55
LIMS3P0CW19 RNA5SP133-201ENST00000363368 119 ntBASIC-0.86□□□□□ -2.55
LIMS3P0CW19 RNA5SP403-201ENST00000363598 108 ntBASIC-0.86□□□□□ -2.55
LIMS3P0CW19 Y_RNA.222-201ENST00000364264 102 ntBASIC-0.86□□□□□ -2.55
LIMS3P0CW19 Y_RNA.293-201ENST00000364908 93 ntBASIC-0.86□□□□□ -2.55
LIMS3P0CW19 Y_RNA.418-201ENST00000384029 102 ntBASIC-0.86□□□□□ -2.55
LIMS3P0CW19 Y_RNA.552-201ENST00000384665 112 ntBASIC-0.86□□□□□ -2.55
LIMS3P0CW19 MIR604-201ENST00000384880 94 ntBASIC-0.86□□□□□ -2.55
LIMS3P0CW19 AC244250.2-201ENST00000418731 148 ntBASIC-0.86□□□□□ -2.55
LIMS3P0CW19 RNU6-699P-201ENST00000517081 110 ntBASIC-0.86□□□□□ -2.55
LIMS3P0CW19 MIR4432-201ENST00000581823 84 ntBASIC-0.86□□□□□ -2.55
LIMS3P0CW19 AC011825.2-201ENST00000583138 553 ntTSL 4 BASIC-0.86□□□□□ -2.55
LIMS3P0CW19 AC002553.4-201ENST00000616896 331 ntBASIC-0.86□□□□□ -2.55
LIMS3P0CW19 AL138825.1-201ENST00000618587 192 ntBASIC-0.86□□□□□ -2.55
LIMS3P0CW19 CCDC7-215ENST00000639629 4158 ntAPPRIS ALT2 TSL 5 BASIC-0.86□□□□□ -2.55
LIMS3P0CW19 Y_RNA.136-201ENST00000363444 102 ntBASIC-0.87□□□□□ -2.55
LIMS3P0CW19 SNORD114-11-201ENST00000363738 75 ntBASIC-0.87□□□□□ -2.55
LIMS3P0CW19 RNU4-84P-201ENST00000364200 139 ntBASIC-0.87□□□□□ -2.55
LIMS3P0CW19 MIR224-201ENST00000384889 81 ntBASIC-0.87□□□□□ -2.55
LIMS3P0CW19 MIR626-201ENST00000385032 94 ntBASIC-0.87□□□□□ -2.55
LIMS3P0CW19 MIR526A2-201ENST00000390198 65 ntBASIC-0.87□□□□□ -2.55
LIMS3P0CW19 MIR1277-201ENST00000408536 78 ntBASIC-0.87□□□□□ -2.55
LIMS3P0CW19 MTATP6P26-201ENST00000445926 662 ntBASIC-0.87□□□□□ -2.55
LIMS3P0CW19 SNORA25.13-201ENST00000516395 103 ntBASIC-0.87□□□□□ -2.55
LIMS3P0CW19 MIR5688-201ENST00000580619 83 ntBASIC-0.87□□□□□ -2.55
LIMS3P0CW19 RNU6-509P-201ENST00000363519 107 ntBASIC-0.88□□□□□ -2.55
LIMS3P0CW19 Y_RNA.813-201ENST00000364639 102 ntBASIC-0.88□□□□□ -2.55
LIMS3P0CW19 Y_RNA.428-201ENST00000384078 102 ntBASIC-0.88□□□□□ -2.55
LIMS3P0CW19 RNU2-55P-201ENST00000411146 174 ntBASIC-0.88□□□□□ -2.55
LIMS3P0CW19 MRPS35P2-201ENST00000508242 191 ntBASIC-0.88□□□□□ -2.55
LIMS3P0CW19 RNU6-1299P-201ENST00000516316 100 ntBASIC-0.88□□□□□ -2.55
LIMS3P0CW19 MIR4636-201ENST00000582271 80 ntBASIC-0.88□□□□□ -2.55
LIMS3P0CW19 AC021613.1-201ENST00000623880 111 ntBASIC-0.88□□□□□ -2.55
LIMS3P0CW19 MIR655-201ENST00000362159 97 ntBASIC-0.89□□□□□ -2.55
LIMS3P0CW19 Y_RNA.251-201ENST00000364551 99 ntBASIC-0.89□□□□□ -2.55
LIMS3P0CW19 Y_RNA.634-201ENST00000364811 113 ntBASIC-0.89□□□□□ -2.55
LIMS3P0CW19 RNU6-480P-201ENST00000384332 107 ntBASIC-0.89□□□□□ -2.55
LIMS3P0CW19 MIR516B1-201ENST00000385211 90 ntBASIC-0.89□□□□□ -2.55
LIMS3P0CW19 BX276092.1-201ENST00000427368 251 ntBASIC-0.89□□□□□ -2.55
LIMS3P0CW19 RNU6-893P-201ENST00000458841 100 ntBASIC-0.89□□□□□ -2.55
LIMS3P0CW19 NAMPTP3-201ENST00000569273 224 ntBASIC-0.89□□□□□ -2.55
LIMS3P0CW19 AL356055.1-201ENST00000602528 446 ntBASIC-0.89□□□□□ -2.55
LIMS3P0CW19 AC025253.1-201ENST00000613623 543 ntBASIC-0.89□□□□□ -2.55
LIMS3P0CW19 MIR6507-201ENST00000613630 70 ntBASIC-0.89□□□□□ -2.55
LIMS3P0CW19 Y_RNA.91-201ENST00000363042 107 ntBASIC-0.9□□□□□ -2.55
LIMS3P0CW19 Y_RNA.304-201ENST00000365011 112 ntBASIC-0.9□□□□□ -2.55
LIMS3P0CW19 TRAJ1-201ENST00000390536 62 ntAPPRIS P1 BASIC-0.9□□□□□ -2.55
LIMS3P0CW19 RNU6-735P-201ENST00000410612 107 ntBASIC-0.9□□□□□ -2.55
LIMS3P0CW19 RNA5SP153-201ENST00000516498 76 ntBASIC-0.9□□□□□ -2.55
LIMS3P0CW19 SNORD116.3-201ENST00000517176 78 ntBASIC-0.9□□□□□ -2.55
LIMS3P0CW19 MIR7111-201ENST00000619751 72 ntBASIC-0.9□□□□□ -2.55
LIMS3P0CW19 U6.109-201ENST00000636749 87 ntBASIC-0.9□□□□□ -2.55
LIMS3P0CW19 RNA5SP205-201ENST00000364653 136 ntBASIC-0.91□□□□□ -2.56
LIMS3P0CW19 Y_RNA.424-201ENST00000384063 103 ntBASIC-0.91□□□□□ -2.56
LIMS3P0CW19 Y_RNA.526-201ENST00000384572 110 ntBASIC-0.91□□□□□ -2.56
LIMS3P0CW19 RNU4-70P-201ENST00000384579 139 ntBASIC-0.91□□□□□ -2.56
LIMS3P0CW19 AJ239322.2-201ENST00000421696 575 ntTSL 5 BASIC-0.91□□□□□ -2.56
LIMS3P0CW19 RNU7-79P-201ENST00000516082 62 ntBASIC-0.91□□□□□ -2.56
LIMS3P0CW19 MIR548H5-201ENST00000580314 60 ntBASIC-0.91□□□□□ -2.56
LIMS3P0CW19 MIR5197-201ENST00000583721 112 ntBASIC-0.91□□□□□ -2.56
LIMS3P0CW19 AL590491.3-201ENST00000610731 82 ntBASIC-0.91□□□□□ -2.56
LIMS3P0CW19 Y_RNA.802-201ENST00000614892 130 ntBASIC-0.91□□□□□ -2.56
LIMS3P0CW19 AC007485.1-201ENST00000616755 206 ntBASIC-0.91□□□□□ -2.56
LIMS3P0CW19 AC105081.1-201ENST00000617727 106 ntBASIC-0.91□□□□□ -2.56
LIMS3P0CW19 MIR376A2-201ENST00000636782 80 ntBASIC-0.91□□□□□ -2.56
LIMS3P0CW19 RNU6-1272P-201ENST00000362776 107 ntBASIC-0.92□□□□□ -2.56
LIMS3P0CW19 Y_RNA.166-201ENST00000363730 102 ntBASIC-0.92□□□□□ -2.56
LIMS3P0CW19 RNU4-24P-201ENST00000364565 139 ntBASIC-0.92□□□□□ -2.56
LIMS3P0CW19 PMCHL1-202ENST00000423102 261 ntBASIC-0.92□□□□□ -2.56
LIMS3P0CW19 NDUFAF4P4-201ENST00000454883 502 ntBASIC-0.92□□□□□ -2.56
LIMS3P0CW19 SNORA40.14-201ENST00000516543 86 ntBASIC-0.92□□□□□ -2.56
Retrieved 100 of 98,524 protein–RNA pairs in 261.5 ms