Protein–RNA interactions for Protein: A0A087X0R7

SENP3-EIF4A1, SENP3-EIF4A1 readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3-EIF4A1A0A087X0R7 Y_RNA.247-201ENST00000364500 92 ntBASIC3.08□□□□□ -1.92
SENP3-EIF4A1A0A087X0R7 U8.13-201ENST00000390842 128 ntBASIC3.08□□□□□ -1.92
SENP3-EIF4A1A0A087X0R7 SNORA26.7-201ENST00000391288 122 ntBASIC3.08□□□□□ -1.92
SENP3-EIF4A1A0A087X0R7 RPS29P28-201ENST00000446439 141 ntBASIC3.08□□□□□ -1.92
SENP3-EIF4A1A0A087X0R7 RNU7-67P-201ENST00000459003 62 ntBASIC3.08□□□□□ -1.92
SENP3-EIF4A1A0A087X0R7 UBL5P1-201ENST00000507979 193 ntBASIC3.08□□□□□ -1.92
SENP3-EIF4A1A0A087X0R7 AC093729.1-201ENST00000513074 128 ntBASIC3.08□□□□□ -1.92
SENP3-EIF4A1A0A087X0R7 RNU6-1116P-201ENST00000517269 99 ntBASIC3.08□□□□□ -1.92
SENP3-EIF4A1A0A087X0R7 MIR8054-201ENST00000620877 86 ntBASIC3.08□□□□□ -1.92
SENP3-EIF4A1A0A087X0R7 KNL1-204ENST00000527044 5404 ntTSL 5 BASIC3.08□□□□□ -1.92
SENP3-EIF4A1A0A087X0R7 ANGPTL3-201ENST00000371129 2805 ntAPPRIS P1 TSL 1 (best) BASIC3.07□□□□□ -1.92
SENP3-EIF4A1A0A087X0R7 CEP44-203ENST00000426172 3037 ntTSL 5 BASIC3.07□□□□□ -1.92
SENP3-EIF4A1A0A087X0R7 SNORD115-37-201ENST00000363768 82 ntBASIC3.07□□□□□ -1.92
SENP3-EIF4A1A0A087X0R7 SNORA68.1-201ENST00000364537 132 ntBASIC3.07□□□□□ -1.92
SENP3-EIF4A1A0A087X0R7 Y_RNA.370-201ENST00000365589 108 ntBASIC3.07□□□□□ -1.92
SENP3-EIF4A1A0A087X0R7 MIR519C-201ENST00000385053 87 ntBASIC3.07□□□□□ -1.92
SENP3-EIF4A1A0A087X0R7 SNORA26.6-201ENST00000391256 115 ntBASIC3.07□□□□□ -1.92
SENP3-EIF4A1A0A087X0R7 RNU6-958P-201ENST00000516995 106 ntBASIC3.07□□□□□ -1.92
SENP3-EIF4A1A0A087X0R7 MIR3670-2-201ENST00000582974 65 ntBASIC3.07□□□□□ -1.92
SENP3-EIF4A1A0A087X0R7 MIR3670-1-201ENST00000584160 65 ntBASIC3.07□□□□□ -1.92
SENP3-EIF4A1A0A087X0R7 MIR3670-3-201ENST00000584855 65 ntBASIC3.07□□□□□ -1.92
SENP3-EIF4A1A0A087X0R7 MIR3670-4-201ENST00000612260 65 ntBASIC3.07□□□□□ -1.92
SENP3-EIF4A1A0A087X0R7 ZMYM2-203ENST00000382874 10139 ntAPPRIS P1 TSL 1 (best) BASIC3.06□□□□□ -1.92
SENP3-EIF4A1A0A087X0R7 RNU6-1229P-201ENST00000364295 107 ntBASIC3.06□□□□□ -1.92
SENP3-EIF4A1A0A087X0R7 U8.9-201ENST00000365667 134 ntBASIC3.06□□□□□ -1.92
SENP3-EIF4A1A0A087X0R7 RNU1-138P-201ENST00000384093 164 ntBASIC3.06□□□□□ -1.92
SENP3-EIF4A1A0A087X0R7 Y_RNA.545-201ENST00000384652 105 ntBASIC3.06□□□□□ -1.92
SENP3-EIF4A1A0A087X0R7 RNU6-1072P-201ENST00000384703 107 ntBASIC3.06□□□□□ -1.92
SENP3-EIF4A1A0A087X0R7 RNU6-443P-201ENST00000384780 107 ntBASIC3.06□□□□□ -1.92
SENP3-EIF4A1A0A087X0R7 RNA5SP109-201ENST00000391010 116 ntBASIC3.06□□□□□ -1.92
SENP3-EIF4A1A0A087X0R7 MIR1276-201ENST00000408707 83 ntBASIC3.06□□□□□ -1.92
SENP3-EIF4A1A0A087X0R7 AL353747.2-201ENST00000439207 205 ntTSL 3 BASIC3.06□□□□□ -1.92
SENP3-EIF4A1A0A087X0R7 RPS29P29-201ENST00000456396 171 ntBASIC3.06□□□□□ -1.92
SENP3-EIF4A1A0A087X0R7 AC018868.1-201ENST00000491307 315 ntBASIC3.06□□□□□ -1.92
SENP3-EIF4A1A0A087X0R7 BX248123.2-201ENST00000606318 124 ntBASIC3.06□□□□□ -1.92
SENP3-EIF4A1A0A087X0R7 MIR6717-201ENST00000622747 73 ntBASIC3.06□□□□□ -1.92
SENP3-EIF4A1A0A087X0R7 CHD9-203ENST00000447540 11509 ntTSL 5 BASIC3.06□□□□□ -1.92
SENP3-EIF4A1A0A087X0R7 FGF7-201ENST00000267843 5467 ntAPPRIS P1 TSL 1 (best) BASIC3.06□□□□□ -1.92
SENP3-EIF4A1A0A087X0R7 RNU6-833P-201ENST00000363486 107 ntBASIC3.05□□□□□ -1.92
SENP3-EIF4A1A0A087X0R7 RNU6-1244P-201ENST00000363614 108 ntBASIC3.05□□□□□ -1.92
SENP3-EIF4A1A0A087X0R7 SNORA25B-201ENST00000365507 128 ntBASIC3.05□□□□□ -1.92
SENP3-EIF4A1A0A087X0R7 RNU6-524P-201ENST00000384270 107 ntBASIC3.05□□□□□ -1.92
SENP3-EIF4A1A0A087X0R7 MIR1291-201ENST00000627649 87 ntBASIC3.05□□□□□ -1.92
SENP3-EIF4A1A0A087X0R7 NEBL-202ENST00000377122 9216 ntTSL 1 (best) BASIC3.05□□□□□ -1.92
SENP3-EIF4A1A0A087X0R7 MGAT4C-210ENST00000620241 3194 ntAPPRIS P1 TSL 2 BASIC3.04□□□□□ -1.92
SENP3-EIF4A1A0A087X0R7 SNORD115-27-201ENST00000364430 82 ntBASIC3.04□□□□□ -1.92
SENP3-EIF4A1A0A087X0R7 RNA5SP270-201ENST00000411361 118 ntBASIC3.04□□□□□ -1.92
SENP3-EIF4A1A0A087X0R7 LINC02386-203ENST00000552182 501 ntTSL 3 BASIC3.04□□□□□ -1.92
SENP3-EIF4A1A0A087X0R7 AC067747.1-201ENST00000608026 250 ntBASIC3.04□□□□□ -1.92
SENP3-EIF4A1A0A087X0R7 U7.4-201ENST00000614961 63 ntBASIC3.04□□□□□ -1.92
SENP3-EIF4A1A0A087X0R7 SEPT14P17-201ENST00000617978 177 ntBASIC3.04□□□□□ -1.92
SENP3-EIF4A1A0A087X0R7 AC010297.1-201ENST00000623948 149 ntBASIC3.04□□□□□ -1.92
SENP3-EIF4A1A0A087X0R7 PLD1-217ENST00000627725 174 ntTSL 5 BASIC3.04□□□□□ -1.92
SENP3-EIF4A1A0A087X0R7 HIF1A-212ENST00000557538 3468 ntTSL 1 (best) BASIC3.04□□□□□ -1.92
SENP3-EIF4A1A0A087X0R7 FAM184A-202ENST00000352896 3700 ntAPPRIS ALT1 TSL 1 (best) BASIC3.04□□□□□ -1.92
SENP3-EIF4A1A0A087X0R7 RNU6-315P-201ENST00000362666 107 ntBASIC3.03□□□□□ -1.92
SENP3-EIF4A1A0A087X0R7 RNA5SP493-201ENST00000364115 91 ntBASIC3.03□□□□□ -1.92
SENP3-EIF4A1A0A087X0R7 SNORA24-201ENST00000384096 131 ntBASIC3.03□□□□□ -1.92
SENP3-EIF4A1A0A087X0R7 Y_RNA.567-201ENST00000384736 106 ntBASIC3.03□□□□□ -1.92
SENP3-EIF4A1A0A087X0R7 AL023284.1-201ENST00000403956 276 ntBASIC3.03□□□□□ -1.92
SENP3-EIF4A1A0A087X0R7 HMGN1P33-201ENST00000432945 451 ntBASIC3.03□□□□□ -1.92
SENP3-EIF4A1A0A087X0R7 AC073127.1-201ENST00000447336 333 ntTSL 3 BASIC3.03□□□□□ -1.92
SENP3-EIF4A1A0A087X0R7 RNU7-73P-201ENST00000458743 63 ntBASIC3.03□□□□□ -1.92
SENP3-EIF4A1A0A087X0R7 SNRPGP19-201ENST00000603826 189 ntBASIC3.03□□□□□ -1.92
SENP3-EIF4A1A0A087X0R7 MIR4791-201ENST00000607666 84 ntBASIC3.03□□□□□ -1.92
SENP3-EIF4A1A0A087X0R7 AC245060.5-201ENST00000610778 3293 ntBASIC3.02□□□□□ -1.93
SENP3-EIF4A1A0A087X0R7 MIR6073-201ENST00000352083 89 ntBASIC3.02□□□□□ -1.93
SENP3-EIF4A1A0A087X0R7 SNORA67.3-201ENST00000384366 140 ntBASIC3.02□□□□□ -1.93
SENP3-EIF4A1A0A087X0R7 MIR206-201ENST00000384872 86 ntBASIC3.02□□□□□ -1.93
SENP3-EIF4A1A0A087X0R7 MIR452-201ENST00000385020 85 ntBASIC3.02□□□□□ -1.93
SENP3-EIF4A1A0A087X0R7 MIR221-201ENST00000385135 110 ntBASIC3.02□□□□□ -1.93
SENP3-EIF4A1A0A087X0R7 MIR548G-201ENST00000408442 89 ntBASIC3.02□□□□□ -1.93
SENP3-EIF4A1A0A087X0R7 RPL31P63-201ENST00000422565 375 ntBASIC3.02□□□□□ -1.93
SENP3-EIF4A1A0A087X0R7 RNU6-826P-201ENST00000516827 104 ntBASIC3.02□□□□□ -1.93
SENP3-EIF4A1A0A087X0R7 RNU6-90P-201ENST00000606352 106 ntBASIC3.02□□□□□ -1.93
SENP3-EIF4A1A0A087X0R7 MIR6845-201ENST00000613182 61 ntBASIC3.02□□□□□ -1.93
SENP3-EIF4A1A0A087X0R7 AC025539.1-201ENST00000515343 4019 ntTSL 2 BASIC3.02□□□□□ -1.93
SENP3-EIF4A1A0A087X0R7 AL020996.3-201ENST00000606617 222 ntBASIC3.01□□□□□ -1.93
SENP3-EIF4A1A0A087X0R7 Hammerhead_HH9.1-201ENST00000616606 77 ntBASIC3.01□□□□□ -1.93
SENP3-EIF4A1A0A087X0R7 MIER3-202ENST00000381199 5188 ntAPPRIS ALT1 TSL 1 (best) BASIC3□□□□□ -1.93
SENP3-EIF4A1A0A087X0R7 RNU6-23P-201ENST00000363283 107 ntBASIC3□□□□□ -1.93
SENP3-EIF4A1A0A087X0R7 RNU6-865P-201ENST00000364772 107 ntBASIC3□□□□□ -1.93
SENP3-EIF4A1A0A087X0R7 RNU6-590P-201ENST00000365039 107 ntBASIC3□□□□□ -1.93
SENP3-EIF4A1A0A087X0R7 RNA5SP37-201ENST00000365420 130 ntBASIC3□□□□□ -1.93
SENP3-EIF4A1A0A087X0R7 MIR34C-201ENST00000384831 77 ntBASIC3□□□□□ -1.93
SENP3-EIF4A1A0A087X0R7 AL034345.1-201ENST00000407768 123 ntBASIC3□□□□□ -1.93
SENP3-EIF4A1A0A087X0R7 MIR1262-201ENST00000408276 93 ntBASIC3□□□□□ -1.93
SENP3-EIF4A1A0A087X0R7 AC018511.2-201ENST00000413431 189 ntTSL 3 BASIC3□□□□□ -1.93
SENP3-EIF4A1A0A087X0R7 COX7A2-206ENST00000472311 325 ntTSL 2 BASIC3□□□□□ -1.93
SENP3-EIF4A1A0A087X0R7 AC140658.3-201ENST00000567603 271 ntBASIC3□□□□□ -1.93
SENP3-EIF4A1A0A087X0R7 PCDH11Y-201ENST00000215473 4595 ntAPPRIS ALT2 TSL 1 (best) BASIC3□□□□□ -1.93
SENP3-EIF4A1A0A087X0R7 CHD9-202ENST00000398510 11337 ntTSL 1 (best) BASIC2.99□□□□□ -1.93
SENP3-EIF4A1A0A087X0R7 AC005336.3-201ENST00000623833 2679 ntBASIC2.99□□□□□ -1.93
SENP3-EIF4A1A0A087X0R7 SNORD38.2-201ENST00000384470 69 ntBASIC2.99□□□□□ -1.93
SENP3-EIF4A1A0A087X0R7 RNU6-950P-201ENST00000384651 107 ntBASIC2.99□□□□□ -1.93
SENP3-EIF4A1A0A087X0R7 MIR136-201ENST00000385207 82 ntBASIC2.99□□□□□ -1.93
SENP3-EIF4A1A0A087X0R7 TRDJ3-201ENST00000390476 59 ntAPPRIS P1 BASIC2.99□□□□□ -1.93
SENP3-EIF4A1A0A087X0R7 RNU6-1190P-201ENST00000410811 104 ntBASIC2.99□□□□□ -1.93
SENP3-EIF4A1A0A087X0R7 HMSD-204ENST00000526932 162 ntTSL 3 BASIC2.99□□□□□ -1.93
SENP3-EIF4A1A0A087X0R7 MIR3169-201ENST00000578032 83 ntBASIC2.99□□□□□ -1.93
Retrieved 100 of 98,524 protein–RNA pairs in 202 ms