Protein–RNA interactions for Protein: Q9Y2N7

HIF3A, Hypoxia-inducible factor 3-alpha, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3AQ9Y2N7 Y_RNA.140-201ENST00000363474 103 ntBASIC2.49□□□□□ -2.01
HIF3AQ9Y2N7 RNU6-509P-201ENST00000363519 107 ntBASIC2.49□□□□□ -2.01
HIF3AQ9Y2N7 RNU6-24P-201ENST00000384440 107 ntBASIC2.49□□□□□ -2.01
HIF3AQ9Y2N7 SUMO1P4-201ENST00000429430 302 ntBASIC2.49□□□□□ -2.01
HIF3AQ9Y2N7 AC234781.5-202ENST00000453508 426 ntTSL 3 BASIC2.49□□□□□ -2.01
HIF3AQ9Y2N7 snoU13.27-201ENST00000459278 104 ntBASIC2.49□□□□□ -2.01
HIF3AQ9Y2N7 DYNC2H1-202ENST00000375735 13678 ntAPPRIS ALT1 TSL 1 (best) BASIC2.49□□□□□ -2.01
HIF3AQ9Y2N7 FOXP2-210ENST00000403559 6415 ntTSL 2 BASIC2.48□□□□□ -2.01
HIF3AQ9Y2N7 RNU1-51P-201ENST00000365345 176 ntBASIC2.48□□□□□ -2.01
HIF3AQ9Y2N7 Y_RNA.448-201ENST00000384185 108 ntBASIC2.48□□□□□ -2.01
HIF3AQ9Y2N7 MIR889-201ENST00000401280 79 ntBASIC2.48□□□□□ -2.01
HIF3AQ9Y2N7 EEF1A1P41-201ENST00000414667 207 ntBASIC2.48□□□□□ -2.01
HIF3AQ9Y2N7 SNORD67.1-201ENST00000516618 108 ntBASIC2.48□□□□□ -2.01
HIF3AQ9Y2N7 AC007450.1-201ENST00000536492 188 ntTSL 3 BASIC2.48□□□□□ -2.01
HIF3AQ9Y2N7 MIR5194-201ENST00000582634 120 ntBASIC2.48□□□□□ -2.01
HIF3AQ9Y2N7 AC105081.1-201ENST00000617727 106 ntBASIC2.48□□□□□ -2.01
HIF3AQ9Y2N7 U1.36-201ENST00000620684 176 ntBASIC2.48□□□□□ -2.01
HIF3AQ9Y2N7 MIR6733-201ENST00000635723 61 ntBASIC2.48□□□□□ -2.01
HIF3AQ9Y2N7 ZNF567-201ENST00000360729 2691 ntTSL 1 (best) BASIC2.47□□□□□ -2.01
HIF3AQ9Y2N7 NEB-203ENST00000397345 26202 ntAPPRIS ALT2 TSL 5 BASIC2.47□□□□□ -2.01
HIF3AQ9Y2N7 NEB-209ENST00000427231 26202 ntAPPRIS ALT2 TSL 5 BASIC2.47□□□□□ -2.01
HIF3AQ9Y2N7 ZMYM1-210ENST00000611874 4466 ntAPPRIS P1 TSL 2 BASIC2.47□□□□□ -2.01
HIF3AQ9Y2N7 SNORD38.1-201ENST00000363863 68 ntBASIC2.47□□□□□ -2.01
HIF3AQ9Y2N7 RNU1-52P-201ENST00000384190 164 ntBASIC2.47□□□□□ -2.01
HIF3AQ9Y2N7 MIR660-201ENST00000385235 97 ntBASIC2.47□□□□□ -2.01
HIF3AQ9Y2N7 AC008892.1-201ENST00000511861 384 ntTSL 3 BASIC2.47□□□□□ -2.01
HIF3AQ9Y2N7 FAM106DP-201ENST00000586416 501 ntBASIC2.47□□□□□ -2.01
HIF3AQ9Y2N7 RPL12P50-201ENST00000603116 116 ntBASIC2.47□□□□□ -2.01
HIF3AQ9Y2N7 MIR6852-201ENST00000621699 66 ntBASIC2.47□□□□□ -2.01
HIF3AQ9Y2N7 PLD1-217ENST00000627725 174 ntTSL 5 BASIC2.47□□□□□ -2.01
HIF3AQ9Y2N7 SLC4A7-201ENST00000295736 7757 ntAPPRIS P3 TSL 1 (best) BASIC2.46□□□□□ -2.01
HIF3AQ9Y2N7 EFR3A-202ENST00000519656 5247 ntTSL 1 (best) BASIC2.46□□□□□ -2.01
HIF3AQ9Y2N7 FAM214A-201ENST00000261844 4217 ntAPPRIS P1 TSL 1 (best) BASIC2.46□□□□□ -2.02
HIF3AQ9Y2N7 PCM1-222ENST00000524226 5955 ntTSL 1 (best) BASIC2.46□□□□□ -2.02
HIF3AQ9Y2N7 RNA5SP393-201ENST00000363423 117 ntBASIC2.46□□□□□ -2.02
HIF3AQ9Y2N7 RNU6-865P-201ENST00000364772 107 ntBASIC2.46□□□□□ -2.02
HIF3AQ9Y2N7 Y_RNA.500-201ENST00000384466 111 ntBASIC2.46□□□□□ -2.02
HIF3AQ9Y2N7 RNU6-1086P-201ENST00000410930 100 ntBASIC2.46□□□□□ -2.02
HIF3AQ9Y2N7 SNORD14A-201ENST00000606526 91 ntBASIC2.46□□□□□ -2.02
HIF3AQ9Y2N7 SNORD3E-202ENST00000627253 216 ntBASIC2.46□□□□□ -2.02
HIF3AQ9Y2N7 FGF7-201ENST00000267843 5467 ntAPPRIS P1 TSL 1 (best) BASIC2.45□□□□□ -2.02
HIF3AQ9Y2N7 SNORD115-27-201ENST00000364430 82 ntBASIC2.45□□□□□ -2.02
HIF3AQ9Y2N7 MIR524-201ENST00000385242 87 ntBASIC2.45□□□□□ -2.02
HIF3AQ9Y2N7 AL445685.2-201ENST00000422551 342 ntBASIC2.45□□□□□ -2.02
HIF3AQ9Y2N7 AC105272.1-201ENST00000438604 198 ntBASIC2.45□□□□□ -2.02
HIF3AQ9Y2N7 RPL23AP6-201ENST00000446637 472 ntBASIC2.45□□□□□ -2.02
HIF3AQ9Y2N7 AC099513.1-201ENST00000490423 301 ntBASIC2.45□□□□□ -2.02
HIF3AQ9Y2N7 DLEU2_6.1-201ENST00000610536 112 ntBASIC2.45□□□□□ -2.02
HIF3AQ9Y2N7 RNU6-633P-201ENST00000362612 103 ntBASIC2.44□□□□□ -2.02
HIF3AQ9Y2N7 RNU6-1244P-201ENST00000363614 108 ntBASIC2.44□□□□□ -2.02
HIF3AQ9Y2N7 Y_RNA.567-201ENST00000384736 106 ntBASIC2.44□□□□□ -2.02
HIF3AQ9Y2N7 SPINT5P-201ENST00000448174 155 ntBASIC2.44□□□□□ -2.02
HIF3AQ9Y2N7 RNU1-98P-201ENST00000458992 160 ntBASIC2.44□□□□□ -2.02
HIF3AQ9Y2N7 S100A11P2-201ENST00000467589 312 ntBASIC2.44□□□□□ -2.02
HIF3AQ9Y2N7 RNU7-35P-201ENST00000517174 62 ntBASIC2.44□□□□□ -2.02
HIF3AQ9Y2N7 EIF4BP1-201ENST00000554881 351 ntBASIC2.44□□□□□ -2.02
HIF3AQ9Y2N7 AC019288.1-201ENST00000557918 224 ntBASIC2.44□□□□□ -2.02
HIF3AQ9Y2N7 MIR4446-201ENST00000578505 67 ntBASIC2.44□□□□□ -2.02
HIF3AQ9Y2N7 AL137790.1-201ENST00000634283 177 ntBASIC2.44□□□□□ -2.02
HIF3AQ9Y2N7 FO624990.1-201ENST00000636373 85 ntBASIC2.44□□□□□ -2.02
HIF3AQ9Y2N7 KPNA5-202ENST00000368564 11311 ntAPPRIS P1 TSL 1 (best) BASIC2.44□□□□□ -2.02
HIF3AQ9Y2N7 ARHGAP28-204ENST00000419673 5492 ntAPPRIS P2 TSL 1 (best) BASIC2.44□□□□□ -2.02
HIF3AQ9Y2N7 RNU6-776P-201ENST00000364403 104 ntBASIC2.43□□□□□ -2.02
HIF3AQ9Y2N7 RNU6-1022P-201ENST00000365049 104 ntBASIC2.43□□□□□ -2.02
HIF3AQ9Y2N7 Y_RNA.316-201ENST00000365118 111 ntBASIC2.43□□□□□ -2.02
HIF3AQ9Y2N7 SNORA44-201ENST00000384584 132 ntBASIC2.43□□□□□ -2.02
HIF3AQ9Y2N7 Y_RNA.537-201ENST00000384626 109 ntBASIC2.43□□□□□ -2.02
HIF3AQ9Y2N7 RNU6-1237P-201ENST00000384777 107 ntBASIC2.43□□□□□ -2.02
HIF3AQ9Y2N7 RNU6-1321P-201ENST00000390905 107 ntBASIC2.43□□□□□ -2.02
HIF3AQ9Y2N7 AL138827.1-201ENST00000402666 306 ntBASIC2.43□□□□□ -2.02
HIF3AQ9Y2N7 MIR548G-201ENST00000408442 89 ntBASIC2.43□□□□□ -2.02
HIF3AQ9Y2N7 Y_RNA.607-201ENST00000410597 98 ntBASIC2.43□□□□□ -2.02
HIF3AQ9Y2N7 RNA5SP21-201ENST00000410917 96 ntBASIC2.43□□□□□ -2.02
HIF3AQ9Y2N7 UBE2DNL-203ENST00000474922 222 ntBASIC2.43□□□□□ -2.02
HIF3AQ9Y2N7 AC234781.5-201ENST00000508429 271 ntBASIC2.43□□□□□ -2.02
HIF3AQ9Y2N7 AC108067.1-201ENST00000514304 215 ntTSL 5 BASIC2.43□□□□□ -2.02
HIF3AQ9Y2N7 MIR4513-201ENST00000581077 86 ntBASIC2.43□□□□□ -2.02
HIF3AQ9Y2N7 AC020891.4-201ENST00000605745 93 ntBASIC2.43□□□□□ -2.02
HIF3AQ9Y2N7 MIR7106-201ENST00000612419 65 ntBASIC2.43□□□□□ -2.02
HIF3AQ9Y2N7 MIR8065-201ENST00000620577 100 ntBASIC2.43□□□□□ -2.02
HIF3AQ9Y2N7 TAB2-201ENST00000367456 4553 ntAPPRIS P1 TSL 5 BASIC2.43□□□□□ -2.02
HIF3AQ9Y2N7 MIR424-201ENST00000362227 98 ntBASIC2.42□□□□□ -2.02
HIF3AQ9Y2N7 SNORA5B-201ENST00000363786 132 ntBASIC2.42□□□□□ -2.02
HIF3AQ9Y2N7 RNU6-457P-201ENST00000363999 107 ntBASIC2.42□□□□□ -2.02
HIF3AQ9Y2N7 RNU6-1067P-201ENST00000384752 107 ntBASIC2.42□□□□□ -2.02
HIF3AQ9Y2N7 AC073127.1-201ENST00000447336 333 ntTSL 3 BASIC2.42□□□□□ -2.02
HIF3AQ9Y2N7 snoU13.16-201ENST00000459350 104 ntBASIC2.42□□□□□ -2.02
HIF3AQ9Y2N7 RN7SKP132-201ENST00000516001 208 ntBASIC2.42□□□□□ -2.02
HIF3AQ9Y2N7 RNU7-79P-201ENST00000516082 62 ntBASIC2.42□□□□□ -2.02
HIF3AQ9Y2N7 AL035078.1-202ENST00000531627 413 ntTSL 2 BASIC2.42□□□□□ -2.02
HIF3AQ9Y2N7 MIR8055-201ENST00000610739 97 ntBASIC2.42□□□□□ -2.02
HIF3AQ9Y2N7 LIFR-201ENST00000263409 10089 ntAPPRIS P1 TSL 1 (best) BASIC2.42□□□□□ -2.02
HIF3AQ9Y2N7 ATP11C-202ENST00000361648 6010 ntAPPRIS ALT2 TSL 1 (best) BASIC2.41□□□□□ -2.02
HIF3AQ9Y2N7 SENP7-201ENST00000314261 4736 ntAPPRIS ALT2 TSL 1 (best) BASIC2.41□□□□□ -2.02
HIF3AQ9Y2N7 RNA5SP100-201ENST00000410903 110 ntBASIC2.41□□□□□ -2.02
HIF3AQ9Y2N7 RNA5SP59-201ENST00000410922 110 ntBASIC2.41□□□□□ -2.02
HIF3AQ9Y2N7 RPL31P63-201ENST00000422565 375 ntBASIC2.41□□□□□ -2.02
HIF3AQ9Y2N7 AC087499.2-201ENST00000432861 149 ntBASIC2.41□□□□□ -2.02
HIF3AQ9Y2N7 RPL23AP94-201ENST00000512518 302 ntBASIC2.41□□□□□ -2.02
HIF3AQ9Y2N7 AC021491.3-201ENST00000513378 156 ntTSL 3 BASIC2.41□□□□□ -2.02
Retrieved 100 of 98,524 protein–RNA pairs in 249.2 ms